Wall clock time and date at job start Sun Mar 29 2020 21:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46852 * 2 1 4 4 H 1.09002 * 110.27643 * 54.29992 * 3 2 1 5 5 C 1.54598 * 110.39179 * 292.15003 * 3 2 1 6 6 C 1.54932 * 102.92273 * 219.08302 * 5 3 2 7 7 N 1.48539 * 103.22489 * 37.41993 * 6 5 3 8 8 C 1.46900 * 110.99796 * 200.27757 * 7 6 5 9 9 C 1.53005 * 109.47005 * 287.39483 * 8 7 6 10 10 O 1.42893 * 109.47144 * 65.00315 * 9 8 7 11 11 C 1.42901 * 114.00044 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47321 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00233 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99830 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00429 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99772 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47180 * 59.99524 * 16 14 12 18 18 H 1.48499 * 109.47056 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47030 * 299.99647 * 16 14 12 20 20 C 1.47897 * 105.81843 * 320.78612 * 7 6 5 21 21 H 1.08993 * 109.47147 * 60.00341 * 1 2 3 22 22 H 1.09001 * 109.47059 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47107 * 300.00082 * 1 2 3 24 24 H 1.08993 * 109.47061 * 239.99955 * 2 1 3 25 25 H 1.09001 * 109.46983 * 119.99905 * 2 1 3 26 26 H 1.08994 * 110.72376 * 337.44853 * 5 3 2 27 27 H 1.09002 * 110.71797 * 100.72760 * 5 3 2 28 28 H 1.08999 * 110.67033 * 278.98382 * 6 5 3 29 29 H 1.09005 * 110.81115 * 155.91631 * 6 5 3 30 30 H 1.09002 * 109.47432 * 47.39063 * 8 7 6 31 31 H 1.08997 * 109.47479 * 167.39388 * 8 7 6 32 32 H 1.09002 * 109.46781 * 184.99905 * 9 8 7 33 33 H 1.09002 * 109.47050 * 304.99896 * 9 8 7 34 34 H 1.08994 * 109.47343 * 299.99853 * 11 10 9 35 35 H 1.09004 * 109.46979 * 60.00069 * 11 10 9 36 36 H 0.96998 * 120.00133 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.92227 * 265.97847 * 20 7 6 38 38 H 1.08999 * 109.91658 * 144.68234 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6034 1.9975 0.8303 5 6 1.7044 2.1325 -1.3422 6 6 2.9719 2.9778 -1.6236 7 7 4.0752 2.1053 -1.1462 8 6 5.2892 2.8889 -0.8818 9 6 5.9131 3.3262 -2.2087 10 8 5.0246 4.2209 -2.8809 11 6 5.5151 4.6920 -4.1377 12 6 4.5031 5.6224 -4.7551 13 1 3.5777 5.8327 -4.2395 14 6 4.7581 6.2044 -5.9787 15 7 5.8847 5.9480 -6.6068 16 14 3.5039 7.3584 -6.7436 17 1 3.2762 8.5127 -5.8377 18 1 4.0136 7.8477 -8.0497 19 1 2.2252 6.6322 -6.9513 20 6 3.5771 1.4660 0.0910 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.5514 1.3931 -2.1282 27 1 0.8288 2.7732 -1.2380 28 1 2.9463 3.9095 -1.0585 29 1 3.0745 3.1788 -2.6901 30 1 5.0322 3.7699 -0.2935 31 1 6.0027 2.2782 -0.3286 32 1 6.8599 3.8308 -2.0162 33 1 6.0886 2.4505 -2.8337 34 1 6.4534 5.2250 -3.9849 35 1 5.6825 3.8449 -4.8029 36 1 6.0639 6.3572 -7.4678 37 1 3.8888 2.0455 0.9599 38 1 3.9603 0.4482 0.1632 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385385023.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:38 Heat of formation + Delta-G solvation = -82.759731 kcal Electronic energy + Delta-G solvation = -16103.777542 eV Core-core repulsion = 13558.619604 eV Total energy + Delta-G solvation = -2545.157938 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.25298 -38.41933 -35.53429 -34.77513 -32.08058 -30.05207 -29.22986 -28.08467 -24.55963 -23.73286 -23.38628 -21.75661 -20.79615 -18.62559 -17.45046 -17.31725 -16.74582 -16.28964 -15.80537 -15.26671 -15.04384 -14.92453 -14.50650 -14.00632 -13.78864 -13.50001 -13.03610 -13.00846 -12.87696 -12.78863 -12.50131 -12.34901 -12.12289 -12.02798 -11.76760 -11.54126 -11.35187 -11.29479 -11.22136 -10.84546 -10.18520 -9.32392 -8.31698 -6.44102 1.39131 1.43983 1.52334 2.34372 3.02109 3.09512 3.23455 3.69273 3.79777 3.91799 4.20910 4.32437 4.41284 4.45844 4.49718 4.56969 4.59904 4.71393 4.77643 4.78513 4.85741 4.92965 4.94994 5.07870 5.15682 5.18521 5.20508 5.29028 5.34731 5.44178 5.53496 5.54648 5.96556 6.02814 6.16963 6.54411 6.82678 7.27817 8.80638 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032587 B = 0.005596 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.021043 B = 5002.116120 C = 5671.055192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C -0.092 4.092 4 H 0.082 0.918 5 C -0.115 4.115 6 C 0.047 3.953 7 N -0.529 5.529 8 C 0.060 3.940 9 C 0.057 3.943 10 O -0.399 6.399 11 C 0.210 3.790 12 C -0.545 4.545 13 H 0.061 0.939 14 C 0.007 3.993 15 N -0.932 5.932 16 Si 0.982 3.018 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.265 1.265 20 C 0.037 3.963 21 H 0.048 0.952 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.110 0.890 32 H 0.048 0.952 33 H 0.039 0.961 34 H -0.017 1.017 35 H -0.019 1.019 36 H 0.270 0.730 37 H 0.049 0.951 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.546 -9.991 14.338 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.111 4.111 4 H 0.100 0.900 5 C -0.153 4.153 6 C -0.081 4.081 7 N -0.254 5.254 8 C -0.068 4.068 9 C -0.020 4.020 10 O -0.319 6.319 11 C 0.135 3.865 12 C -0.582 4.582 13 H 0.080 0.920 14 C -0.192 4.192 15 N -0.571 5.571 16 Si 0.805 3.195 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.190 1.190 20 C -0.090 4.090 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.128 0.872 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.001 0.999 35 H -0.001 1.001 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.457 -10.291 13.877 18.817 hybrid contribution 0.117 1.230 -0.298 1.271 sum -7.340 -9.061 13.578 17.898 Atomic orbital electron populations 1.21775 0.95272 1.01960 1.01851 1.21537 0.96303 0.94545 1.02191 1.22043 0.94263 0.97530 0.97298 0.89996 1.22586 0.96471 0.98633 0.97609 1.23105 0.90654 0.93820 1.00488 1.64717 1.04011 1.28746 1.27932 1.22275 0.93629 0.96433 0.94500 1.22552 0.92859 0.92423 0.94157 1.87848 1.45198 1.63810 1.35056 1.19770 0.93988 0.92248 0.80471 1.21322 1.04512 1.27746 1.04645 0.92039 1.25957 0.98062 0.98356 0.96805 1.70068 1.25719 1.45068 1.16243 0.85255 0.78364 0.78435 0.77488 1.18994 1.19988 1.19003 1.23037 0.95094 1.00230 0.90683 0.93251 0.92053 0.92276 0.92529 0.90782 0.91411 0.90596 0.95180 0.92121 0.94432 0.87178 0.93400 0.94259 0.99932 1.00144 0.92076 0.93270 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.77 71.98 0.70 -1.65 16 2 C -0.11 -1.89 5.09 30.60 0.16 -1.73 16 3 C -0.09 -1.95 3.01 -9.91 -0.03 -1.98 16 4 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 5 C -0.11 -3.04 5.81 31.80 0.18 -2.86 16 6 C 0.05 1.63 5.33 86.65 0.46 2.09 16 7 N -0.53 -16.64 5.24 -883.01 -4.63 -21.27 16 8 C 0.06 1.86 5.27 86.31 0.45 2.31 16 9 C 0.06 2.25 6.25 71.98 0.45 2.70 16 10 O -0.40 -19.92 7.69 -148.98 -1.15 -21.06 16 11 C 0.21 12.17 5.69 71.24 0.41 12.57 16 12 C -0.54 -32.95 9.43 25.60 0.24 -32.71 16 13 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 14 C 0.01 0.39 5.46 84.66 0.46 0.85 16 15 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 16 Si 0.98 44.91 29.54 68.60 2.03 46.93 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 C 0.04 0.86 6.32 86.45 0.55 1.41 16 21 H 0.05 0.84 7.53 -2.39 -0.02 0.82 16 22 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.06 1.11 8.03 -2.39 -0.02 1.09 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.07 1.85 7.79 -2.39 -0.02 1.83 16 27 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.03 1.08 7.81 -2.39 -0.02 1.06 16 29 H 0.06 2.62 6.79 -2.38 -0.02 2.61 16 30 H 0.04 1.19 7.83 -2.39 -0.02 1.17 16 31 H 0.11 2.67 8.08 -2.39 -0.02 2.65 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 33 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 34 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 35 H -0.02 -1.18 8.14 -2.39 -0.02 -1.19 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.05 1.05 7.77 -2.39 -0.02 1.03 16 38 H 0.09 1.82 7.68 -2.39 -0.02 1.81 16 Total: -1.00 -66.47 303.24 1.56 -64.92 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 0.99 Total: 6.20 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 4.04 Total: -18.98 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -4.35 Total: -78.01 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -1.15 Total: -21.06 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.47 1.56 -64.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385385023.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.843 kcal (2) G-P(sol) polarization free energy of solvation -66.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds