Wall clock time and date at job start Sun Mar 29 2020 22:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.45339 * 2 1 4 4 C 1.53042 * 109.46142 * 240.02849 * 2 1 3 5 5 C 1.53126 * 109.27609 * 180.80577 * 4 2 1 6 6 C 1.53120 * 109.16067 * 57.65261 * 5 4 2 7 7 C 1.53035 * 109.31377 * 302.32825 * 6 5 4 8 8 N 1.46852 * 109.46180 * 119.97411 * 2 1 3 9 9 C 1.46895 * 110.99878 * 305.85815 * 8 2 1 10 10 C 1.53003 * 109.46859 * 284.74568 * 9 8 2 11 11 O 1.42898 * 109.47135 * 66.26516 * 10 9 8 12 12 C 1.42910 * 113.99619 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46577 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00368 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99546 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00160 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99993 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47047 * 89.99891 * 17 15 13 19 19 H 1.48495 * 109.46973 * 210.00266 * 17 15 13 20 20 H 1.48499 * 109.46840 * 330.00176 * 17 15 13 21 21 H 1.09003 * 109.46933 * 187.25037 * 1 2 3 22 22 H 1.08991 * 109.47119 * 307.25374 * 1 2 3 23 23 H 1.08998 * 109.46935 * 67.25787 * 1 2 3 24 24 H 1.08997 * 109.50186 * 60.86561 * 4 2 1 25 25 H 1.09003 * 109.50321 * 300.74435 * 4 2 1 26 26 H 1.08998 * 109.52194 * 297.74662 * 5 4 2 27 27 H 1.08998 * 109.52076 * 177.55477 * 5 4 2 28 28 H 1.09005 * 109.50227 * 62.28621 * 6 5 4 29 29 H 1.09001 * 109.50227 * 182.36652 * 6 5 4 30 30 H 1.08995 * 109.46640 * 179.22019 * 7 6 5 31 31 H 1.09013 * 109.45845 * 299.18377 * 7 6 5 32 32 H 1.08996 * 109.47421 * 44.74451 * 9 8 2 33 33 H 1.09004 * 109.46883 * 164.74621 * 9 8 2 34 34 H 1.08997 * 109.46909 * 186.26665 * 10 9 8 35 35 H 1.09000 * 109.46725 * 306.26086 * 10 9 8 36 36 H 1.08994 * 109.46960 * 299.99630 * 12 11 10 37 37 H 1.08993 * 109.46774 * 59.99992 * 12 11 10 38 38 H 0.96996 * 120.00321 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5710 -0.7360 -1.2356 6 6 4.0548 -1.4188 0.0467 7 6 3.4873 -0.6780 1.2596 8 7 2.0193 -0.6918 1.1994 9 6 1.4372 -0.1106 2.4165 10 6 2.1143 1.2282 2.7165 11 8 1.7909 2.1665 1.6884 12 6 2.3762 3.4569 1.8742 13 6 1.9704 4.3607 0.7386 14 1 1.3300 3.9870 -0.0466 15 6 2.4167 5.6647 0.7022 16 7 3.1969 6.1197 1.6581 17 14 1.9143 6.7849 -0.7058 18 1 0.6543 7.4876 -0.3538 19 1 2.9860 7.7831 -0.9508 20 1 1.7031 5.9743 -1.9320 21 1 -0.3633 -1.0195 0.1297 22 1 -0.3633 0.6220 0.8179 23 1 -0.3633 0.3973 -0.9478 24 1 1.6895 -0.1981 -2.1399 25 1 1.6659 -1.7447 -1.2577 26 1 3.9457 0.2870 -1.2672 27 1 3.9380 -1.2863 -2.1020 28 1 3.7125 -2.4536 0.0594 29 1 5.1440 -1.3953 0.0828 30 1 3.8189 -1.1704 2.1738 31 1 3.8412 0.3530 1.2537 32 1 0.3690 0.0476 2.2687 33 1 1.5913 -0.7914 3.2538 34 1 1.7630 1.6059 3.6767 35 1 3.1947 1.0885 2.7544 36 1 2.0299 3.8806 2.8168 37 1 3.4620 3.3638 1.8948 38 1 3.5112 7.0370 1.6323 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385385633.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:58 Heat of formation + Delta-G solvation = -79.028839 kcal Electronic energy + Delta-G solvation = -16909.986191 eV Core-core repulsion = 14364.990037 eV Total energy + Delta-G solvation = -2544.996154 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.59265 -38.21091 -35.20635 -34.46034 -33.35126 -30.25481 -28.77663 -27.73110 -25.28085 -24.56988 -22.83601 -22.03417 -20.23846 -18.61725 -17.51194 -17.32018 -16.57340 -16.15551 -16.06195 -15.42211 -15.17073 -14.93432 -14.57483 -14.02826 -13.66968 -13.28085 -13.14317 -12.96920 -12.81887 -12.73379 -12.66755 -12.54608 -12.28516 -12.06134 -11.72915 -11.55959 -11.33689 -11.16205 -11.02441 -10.84243 -10.22790 -9.11249 -8.35925 -6.48446 1.36080 1.38852 1.50779 2.30521 2.94969 2.97819 3.27180 3.90626 4.00912 4.03460 4.17545 4.27430 4.33634 4.45623 4.55069 4.59969 4.65881 4.78698 4.79353 4.85174 4.87239 4.96579 5.05176 5.09553 5.09887 5.14183 5.21076 5.30308 5.38415 5.39272 5.50602 5.62845 5.92107 6.22719 6.26669 6.49391 6.77240 7.23527 8.76436 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028152 B = 0.007511 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.373621 B = 3726.944821 C = 3960.772513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.067 3.933 3 H 0.036 0.964 4 C -0.105 4.105 5 C -0.124 4.124 6 C -0.107 4.107 7 C 0.047 3.953 8 N -0.518 5.518 9 C 0.056 3.944 10 C 0.015 3.985 11 O -0.391 6.391 12 C 0.211 3.789 13 C -0.542 4.542 14 H 0.061 0.939 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.981 3.019 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.264 1.264 21 H 0.070 0.930 22 H 0.044 0.956 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.035 0.965 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.008 0.992 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.040 0.960 35 H 0.038 0.962 36 H -0.020 1.020 37 H -0.024 1.024 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.361 -14.862 -2.843 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.041 4.041 3 H 0.053 0.947 4 C -0.143 4.143 5 C -0.161 4.161 6 C -0.145 4.145 7 C -0.081 4.081 8 N -0.242 5.242 9 C -0.072 4.072 10 C -0.064 4.064 11 O -0.311 6.311 12 C 0.136 3.864 13 C -0.580 4.580 14 H 0.079 0.921 15 C -0.193 4.193 16 N -0.571 5.571 17 Si 0.804 3.196 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.188 1.188 21 H 0.089 0.911 22 H 0.063 0.937 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.026 0.974 32 H 0.105 0.895 33 H 0.129 0.871 34 H 0.059 0.941 35 H 0.056 0.944 36 H -0.002 1.002 37 H -0.006 1.006 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.534 -15.256 -2.974 15.619 hybrid contribution 0.529 2.062 0.168 2.135 sum -1.005 -13.194 -2.807 13.527 Atomic orbital electron populations 1.21758 0.94174 1.01790 1.01364 1.21781 0.95844 0.96046 0.90425 0.94653 1.21598 0.95532 1.01112 0.96081 1.21598 0.95977 0.99823 0.98746 1.21533 1.00000 0.99960 0.92981 1.22191 0.87903 0.97953 1.00033 1.62371 1.06966 1.52990 1.01880 1.22471 1.00116 0.90678 0.93927 1.23395 0.99213 0.92162 0.91604 1.87900 1.73826 1.22219 1.47120 1.19747 0.90868 0.80190 0.95564 1.21322 1.31552 0.96355 1.08730 0.92070 1.25968 0.94497 0.99273 0.99537 1.70072 1.34828 1.17388 1.34781 0.85214 0.78327 0.77751 0.78347 1.19189 1.19926 1.18816 0.91059 0.93702 0.92439 0.91931 0.90292 0.94646 0.90074 0.90022 0.90803 0.89697 0.97356 0.89533 0.87097 0.94131 0.94359 1.00179 1.00604 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 8.57 71.98 0.62 -3.37 16 2 C 0.07 2.21 1.94 44.94 0.09 2.30 16 3 H 0.04 1.53 5.78 -2.39 -0.01 1.52 16 4 C -0.11 -2.88 5.37 30.65 0.16 -2.71 16 5 C -0.12 -3.26 6.00 30.68 0.18 -3.07 16 6 C -0.11 -2.59 6.09 30.65 0.19 -2.40 16 7 C 0.05 1.37 4.52 86.31 0.39 1.76 16 8 N -0.52 -15.56 4.69 -870.88 -4.09 -19.65 16 9 C 0.06 1.68 5.80 86.31 0.50 2.18 16 10 C 0.01 0.56 5.54 71.98 0.40 0.96 16 11 O -0.39 -19.03 7.52 -148.98 -1.12 -20.15 16 12 C 0.21 12.13 5.69 71.24 0.41 12.53 16 13 C -0.54 -32.62 9.43 25.60 0.24 -32.38 16 14 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 15 C 0.01 0.33 5.46 84.66 0.46 0.79 16 16 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 17 Si 0.98 44.86 29.54 68.60 2.03 46.89 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 21 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.04 1.47 6.44 -2.39 -0.02 1.46 16 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 26 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.08 2.13 8.12 -2.39 -0.02 2.11 16 31 H 0.01 0.30 6.45 -2.38 -0.02 0.28 16 32 H 0.09 2.61 5.58 -2.39 -0.01 2.59 16 33 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 34 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 35 H 0.04 1.47 6.05 -2.39 -0.01 1.46 16 36 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 37 H -0.02 -1.45 8.14 -2.39 -0.02 -1.47 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -65.80 293.01 1.74 -64.06 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 1.00 Total: 8.81 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 3.64 Total: -23.40 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -3.80 Total: -76.20 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -1.12 Total: -20.15 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -65.80 1.74 -64.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385385633.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.969 kcal (2) G-P(sol) polarization free energy of solvation -65.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds