Wall clock time and date at job start Sun Mar 29 2020 22:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.44823 * 2 1 4 4 C 1.53040 * 109.46337 * 119.96902 * 2 1 3 5 5 C 1.53120 * 109.27707 * 179.19631 * 4 2 1 6 6 C 1.53125 * 109.15861 * 302.34973 * 5 4 2 7 7 C 1.53034 * 109.27895 * 57.65334 * 6 5 4 8 8 N 1.46839 * 109.52521 * 300.82005 * 7 6 5 9 9 C 1.46900 * 111.00261 * 185.84018 * 8 7 6 10 10 C 1.53009 * 109.47007 * 72.64865 * 9 8 7 11 11 O 1.42893 * 109.47107 * 65.00492 * 10 9 8 12 12 C 1.42896 * 114.00223 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47516 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99552 * 359.71735 * 13 12 11 15 15 C 1.37873 * 120.00364 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00146 * 179.72218 * 15 13 12 17 17 Si 1.86802 * 119.99671 * 359.72720 * 15 13 12 18 18 H 1.48498 * 109.47522 * 89.99905 * 17 15 13 19 19 H 1.48505 * 109.46603 * 209.99839 * 17 15 13 20 20 H 1.48500 * 109.47167 * 329.99462 * 17 15 13 21 21 H 1.08998 * 109.46963 * 172.50966 * 1 2 3 22 22 H 1.09001 * 109.46977 * 292.50522 * 1 2 3 23 23 H 1.08996 * 109.47254 * 52.50169 * 1 2 3 24 24 H 1.09000 * 109.49755 * 59.25552 * 4 2 1 25 25 H 1.08995 * 109.53604 * 299.15837 * 4 2 1 26 26 H 1.08996 * 109.52060 * 182.44306 * 5 4 2 27 27 H 1.08995 * 109.57387 * 62.28303 * 5 4 2 28 28 H 1.08997 * 109.50058 * 297.70865 * 6 5 4 29 29 H 1.09003 * 109.53243 * 177.61741 * 6 5 4 30 30 H 1.09006 * 109.46314 * 180.79931 * 7 6 5 31 31 H 1.09003 * 109.46156 * 60.83857 * 7 6 5 32 32 H 1.08999 * 109.47006 * 312.65479 * 9 8 7 33 33 H 1.09000 * 109.47497 * 192.64995 * 9 8 7 34 34 H 1.08997 * 109.46895 * 304.99952 * 10 9 8 35 35 H 1.09000 * 109.46738 * 185.00188 * 10 9 8 36 36 H 1.08995 * 109.47399 * 59.99476 * 12 11 10 37 37 H 1.09004 * 109.46505 * 299.99668 * 12 11 10 38 38 H 0.97003 * 119.99949 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0279 0.0000 4 6 2.0400 -0.7208 1.2500 5 6 3.5710 -0.7359 1.2356 6 6 4.0548 -1.4187 -0.0468 7 6 3.4864 -0.6776 -1.2591 8 7 2.0193 -0.6917 -1.1993 9 6 1.4372 -0.1106 -2.4165 10 6 1.6181 -1.0838 -3.5832 11 8 0.8643 -2.2718 -3.3337 12 6 0.9652 -3.2523 -4.3684 13 6 0.1361 -4.4562 -4.0023 14 1 -0.4095 -4.4729 -3.0703 15 6 0.0781 -5.5384 -4.8545 16 7 -0.6411 -6.5913 -4.5325 17 14 1.0214 -5.5092 -6.4666 18 1 2.3821 -6.0646 -6.2542 19 1 0.3036 -6.3298 -7.4750 20 1 1.1282 -4.1099 -6.9524 21 1 -0.3633 -1.0189 -0.1340 22 1 -0.3633 0.3934 0.9494 23 1 -0.3633 0.6255 -0.8153 24 1 1.6660 -1.7446 1.2577 25 1 1.6896 -0.1987 2.1403 26 1 3.9380 -1.2861 2.1020 27 1 3.9466 0.2868 1.2677 28 1 3.7126 -2.4534 -0.0594 29 1 5.1440 -1.3951 -0.0836 30 1 3.8175 -1.1697 -2.1736 31 1 3.8403 0.3534 -1.2532 32 1 1.9391 0.8293 -2.6463 33 1 0.3746 0.0741 -2.2587 34 1 2.6733 -1.3375 -3.6844 35 1 1.2667 -0.6170 -4.5034 36 1 2.0069 -3.5510 -4.4855 37 1 0.6006 -2.8307 -5.3051 38 1 -0.6816 -7.3528 -5.1320 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385385634.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:00 Heat of formation + Delta-G solvation = -54.150167 kcal Electronic energy + Delta-G solvation = -16409.688949 eV Core-core repulsion = 13865.771615 eV Total energy + Delta-G solvation = -2543.917334 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.26310 -36.68923 -33.72062 -32.58478 -32.28234 -29.10856 -27.36320 -26.73328 -24.00697 -21.82568 -21.58545 -20.82738 -19.52190 -16.78744 -16.14779 -15.65195 -15.13109 -14.55894 -14.35228 -14.30970 -14.00313 -13.81783 -12.97406 -12.67090 -12.52632 -12.20508 -11.89584 -11.82609 -11.69436 -11.35331 -10.95106 -10.85473 -10.70625 -10.67143 -10.58104 -10.08078 -10.02390 -9.78859 -9.08985 -8.74699 -8.36222 -7.99100 -6.05454 -4.03313 3.28332 3.34933 3.36865 4.00585 4.40658 4.71982 4.82654 4.88793 4.97731 5.19380 5.25988 5.37928 5.42805 5.49176 5.57715 5.61171 5.72481 5.80277 5.84428 5.91659 5.93511 5.98490 6.03540 6.06114 6.24328 6.26746 6.32591 6.40670 6.54043 6.68821 7.08233 7.35302 7.39137 7.67808 8.14385 8.77038 9.08132 9.54748 11.07798 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034119 B = 0.005993 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.467039 B = 4670.831638 C = 4701.996871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.085 3.915 3 H 0.031 0.969 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.118 4.118 7 C 0.056 3.944 8 N -0.519 5.519 9 C 0.054 3.946 10 C 0.065 3.935 11 O -0.363 6.363 12 C 0.168 3.832 13 C -0.513 4.513 14 H 0.083 0.917 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.875 3.125 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.267 1.267 21 H 0.074 0.926 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.024 0.976 32 H 0.037 0.963 33 H 0.088 0.912 34 H 0.035 0.965 35 H 0.038 0.962 36 H -0.005 1.005 37 H -0.001 1.001 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.982 14.859 7.997 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 H 0.049 0.951 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.072 4.072 8 N -0.244 5.244 9 C -0.073 4.073 10 C -0.014 4.014 11 O -0.282 6.282 12 C 0.092 3.908 13 C -0.551 4.551 14 H 0.101 0.899 15 C -0.130 4.130 16 N -0.536 5.536 17 Si 0.702 3.298 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.192 1.192 21 H 0.093 0.907 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.013 0.987 37 H 0.017 0.983 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.653 14.155 8.128 18.028 hybrid contribution 0.965 0.761 -1.286 1.778 sum 8.618 14.916 6.842 18.535 Atomic orbital electron populations 1.21944 0.94296 1.03575 1.00897 1.21561 0.95514 0.94569 0.90697 0.95137 1.21634 0.95241 1.01965 0.96171 1.21564 0.96083 1.00111 0.97915 1.21580 0.99191 1.00947 0.93836 1.22101 0.87826 0.97983 0.99277 1.61807 1.06318 1.54963 1.01298 1.22229 1.01093 0.94190 0.89835 1.22315 0.95357 0.88336 0.95354 1.88001 1.68796 1.25634 1.45752 1.20567 0.95507 0.87944 0.86761 1.20905 1.28793 0.97740 1.07651 0.89932 1.24765 0.95312 0.95063 0.97903 1.69880 1.40462 1.05887 1.37393 0.86863 0.80428 0.78508 0.84007 1.20014 1.20859 1.19186 0.90707 0.92624 0.92680 0.90603 0.91997 0.92035 0.92794 0.90558 0.91989 0.90600 0.95773 0.94481 0.89368 0.94644 0.94403 0.98701 0.98340 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.57 37.16 0.32 -1.59 16 2 C 0.08 1.10 2.44 -67.72 -0.17 0.94 16 3 H 0.03 0.38 8.14 -51.92 -0.42 -0.05 16 4 C -0.11 -1.34 5.37 -26.65 -0.14 -1.48 16 5 C -0.12 -1.30 6.00 -26.60 -0.16 -1.46 16 6 C -0.12 -1.45 6.09 -26.65 -0.16 -1.62 16 7 C 0.06 0.76 5.30 -3.84 -0.02 0.74 16 8 N -0.52 -7.98 4.39 -226.68 -0.99 -8.97 16 9 C 0.05 0.83 5.17 -3.82 -0.02 0.81 16 10 C 0.06 1.18 6.10 37.16 0.23 1.41 16 11 O -0.36 -8.76 10.27 -35.23 -0.36 -9.12 16 12 C 0.17 4.40 4.76 36.00 0.17 4.57 16 13 C -0.51 -15.64 9.99 -34.44 -0.34 -15.99 16 14 H 0.08 2.76 8.06 -52.48 -0.42 2.34 16 15 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 16 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 17 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.40 6.54 56.52 0.37 -6.04 16 21 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 22 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 23 H 0.05 0.67 6.42 -51.93 -0.33 0.34 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.09 6.46 -51.93 -0.34 0.76 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.04 0.48 8.04 -51.93 -0.42 0.06 16 33 H 0.09 1.35 5.52 -51.93 -0.29 1.06 16 34 H 0.04 0.62 6.53 -51.93 -0.34 0.29 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.00 -0.12 7.58 -51.93 -0.39 -0.51 16 37 H 0.00 -0.03 7.19 -51.93 -0.37 -0.40 16 38 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 295.78 15.07 4.46 4.46 Total: -1.00 -32.16 295.78 -7.91 -40.07 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -6.72 Total: -4.58 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -0.40 Total: -11.64 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.22 Total: -36.38 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.36 Total: -9.12 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.16 -7.91 -40.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385385634.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.076 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds