Wall clock time and date at job start Sun Mar 29 2020 22:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.44823 * 2 1 4 4 C 1.53040 * 109.46337 * 119.96902 * 2 1 3 5 5 C 1.53120 * 109.27707 * 179.19631 * 4 2 1 6 6 C 1.53125 * 109.15861 * 302.34973 * 5 4 2 7 7 C 1.53034 * 109.27895 * 57.65334 * 6 5 4 8 8 N 1.46839 * 109.52521 * 300.82005 * 7 6 5 9 9 C 1.46900 * 111.00261 * 185.84018 * 8 7 6 10 10 C 1.53009 * 109.47007 * 72.64865 * 9 8 7 11 11 O 1.42893 * 109.47107 * 65.00492 * 10 9 8 12 12 C 1.42896 * 114.00223 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47516 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99552 * 359.71735 * 13 12 11 15 15 C 1.37873 * 120.00364 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00146 * 179.72218 * 15 13 12 17 17 Si 1.86802 * 119.99671 * 359.72720 * 15 13 12 18 18 H 1.48498 * 109.47522 * 89.99905 * 17 15 13 19 19 H 1.48505 * 109.46603 * 209.99839 * 17 15 13 20 20 H 1.48500 * 109.47167 * 329.99462 * 17 15 13 21 21 H 1.08998 * 109.46963 * 172.50966 * 1 2 3 22 22 H 1.09001 * 109.46977 * 292.50522 * 1 2 3 23 23 H 1.08996 * 109.47254 * 52.50169 * 1 2 3 24 24 H 1.09000 * 109.49755 * 59.25552 * 4 2 1 25 25 H 1.08995 * 109.53604 * 299.15837 * 4 2 1 26 26 H 1.08996 * 109.52060 * 182.44306 * 5 4 2 27 27 H 1.08995 * 109.57387 * 62.28303 * 5 4 2 28 28 H 1.08997 * 109.50058 * 297.70865 * 6 5 4 29 29 H 1.09003 * 109.53243 * 177.61741 * 6 5 4 30 30 H 1.09006 * 109.46314 * 180.79931 * 7 6 5 31 31 H 1.09003 * 109.46156 * 60.83857 * 7 6 5 32 32 H 1.08999 * 109.47006 * 312.65479 * 9 8 7 33 33 H 1.09000 * 109.47497 * 192.64995 * 9 8 7 34 34 H 1.08997 * 109.46895 * 304.99952 * 10 9 8 35 35 H 1.09000 * 109.46738 * 185.00188 * 10 9 8 36 36 H 1.08995 * 109.47399 * 59.99476 * 12 11 10 37 37 H 1.09004 * 109.46505 * 299.99668 * 12 11 10 38 38 H 0.97003 * 119.99949 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0279 0.0000 4 6 2.0400 -0.7208 1.2500 5 6 3.5710 -0.7359 1.2356 6 6 4.0548 -1.4187 -0.0468 7 6 3.4864 -0.6776 -1.2591 8 7 2.0193 -0.6917 -1.1993 9 6 1.4372 -0.1106 -2.4165 10 6 1.6181 -1.0838 -3.5832 11 8 0.8643 -2.2718 -3.3337 12 6 0.9652 -3.2523 -4.3684 13 6 0.1361 -4.4562 -4.0023 14 1 -0.4095 -4.4729 -3.0703 15 6 0.0781 -5.5384 -4.8545 16 7 -0.6411 -6.5913 -4.5325 17 14 1.0214 -5.5092 -6.4666 18 1 2.3821 -6.0646 -6.2542 19 1 0.3036 -6.3298 -7.4750 20 1 1.1282 -4.1099 -6.9524 21 1 -0.3633 -1.0189 -0.1340 22 1 -0.3633 0.3934 0.9494 23 1 -0.3633 0.6255 -0.8153 24 1 1.6660 -1.7446 1.2577 25 1 1.6896 -0.1987 2.1403 26 1 3.9380 -1.2861 2.1020 27 1 3.9466 0.2868 1.2677 28 1 3.7126 -2.4534 -0.0594 29 1 5.1440 -1.3951 -0.0836 30 1 3.8175 -1.1697 -2.1736 31 1 3.8403 0.3534 -1.2532 32 1 1.9391 0.8293 -2.6463 33 1 0.3746 0.0741 -2.2587 34 1 2.6733 -1.3375 -3.6844 35 1 1.2667 -0.6170 -4.5034 36 1 2.0069 -3.5510 -4.4855 37 1 0.6006 -2.8307 -5.3051 38 1 -0.6816 -7.3528 -5.1320 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385385634.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:00 Heat of formation + Delta-G solvation = -76.438653 kcal Electronic energy + Delta-G solvation = -16410.655450 eV Core-core repulsion = 13865.771615 eV Total energy + Delta-G solvation = -2544.883835 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.34640 -38.41634 -35.10832 -34.51123 -33.40883 -30.77147 -29.08392 -27.84298 -25.13338 -23.94925 -22.74628 -21.96324 -20.53566 -19.03088 -17.41011 -17.35554 -16.54914 -16.09146 -15.98070 -15.40583 -15.18483 -14.95236 -14.64701 -14.13070 -14.03499 -13.67705 -13.16218 -13.05203 -12.83629 -12.71886 -12.64251 -12.43172 -12.11499 -11.87294 -11.80644 -11.58192 -11.36876 -11.10574 -11.03347 -10.90197 -10.26309 -9.06684 -8.36528 -6.43882 1.32079 1.35637 1.46577 2.29546 2.93329 2.95788 3.16681 3.86266 3.90515 4.00161 4.12220 4.31667 4.32732 4.41931 4.48480 4.53850 4.57035 4.58490 4.65171 4.75394 4.80375 4.88190 4.98973 4.99436 5.05134 5.08501 5.15074 5.26430 5.29652 5.37758 5.45782 5.54467 5.96257 6.27182 6.35572 6.60319 6.83482 7.20910 8.80914 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034119 B = 0.005993 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.467039 B = 4670.831638 C = 4701.996871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.084 3.916 3 H 0.050 0.950 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.118 4.118 7 C 0.055 3.945 8 N -0.551 5.551 9 C 0.059 3.941 10 C 0.055 3.945 11 O -0.391 6.391 12 C 0.180 3.820 13 C -0.542 4.542 14 H 0.027 0.973 15 C 0.012 3.988 16 N -0.943 5.943 17 Si 0.957 3.043 18 H -0.260 1.260 19 H -0.271 1.271 20 H -0.246 1.246 21 H 0.038 0.962 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.047 0.953 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.055 0.945 36 H 0.004 0.996 37 H 0.010 0.990 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.899 16.935 7.122 20.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 H 0.068 0.932 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.156 4.156 7 C -0.072 4.072 8 N -0.277 5.277 9 C -0.068 4.068 10 C -0.022 4.022 11 O -0.311 6.311 12 C 0.104 3.896 13 C -0.580 4.580 14 H 0.045 0.955 15 C -0.186 4.186 16 N -0.583 5.583 17 Si 0.778 3.222 18 H -0.185 1.185 19 H -0.196 1.196 20 H -0.170 1.170 21 H 0.057 0.943 22 H 0.097 0.903 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.022 0.978 37 H 0.027 0.973 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.572 16.254 7.274 20.217 hybrid contribution 0.309 0.119 -0.899 0.958 sum 9.881 16.373 6.375 20.158 Atomic orbital electron populations 1.21918 0.94644 1.01498 1.02323 1.21632 0.95258 0.95352 0.90099 0.93232 1.21650 0.96203 1.00486 0.96701 1.21545 0.95091 1.01117 0.97389 1.21586 1.00354 0.99213 0.94428 1.22124 0.86923 0.99085 0.99099 1.61765 1.07523 1.56354 1.02065 1.22174 1.01303 0.94382 0.88991 1.22684 0.95112 0.86736 0.97671 1.87962 1.70266 1.27323 1.45529 1.20263 0.94811 0.87090 0.87437 1.21159 1.29899 1.00675 1.06251 0.95450 1.25853 0.96132 0.93993 1.02603 1.70039 1.41909 1.06879 1.39446 0.85595 0.78957 0.79861 0.77823 1.18496 1.19639 1.16959 0.94267 0.90347 0.92307 0.93439 0.89777 0.90982 0.90923 0.93595 0.89997 0.91998 0.93677 0.91253 0.89947 0.93868 0.92731 0.97797 0.97257 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 8.57 71.98 0.62 -3.05 16 2 C 0.08 2.07 2.44 44.94 0.11 2.18 16 3 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 4 C -0.11 -2.55 5.37 30.65 0.16 -2.38 16 5 C -0.11 -2.24 6.00 30.68 0.18 -2.06 16 6 C -0.12 -2.78 6.09 30.65 0.19 -2.59 16 7 C 0.06 1.41 5.30 86.33 0.46 1.87 16 8 N -0.55 -16.50 4.39 -871.09 -3.82 -20.32 16 9 C 0.06 1.71 5.17 86.31 0.45 2.16 16 10 C 0.06 1.95 6.10 71.99 0.44 2.39 16 11 O -0.39 -19.18 10.27 -148.98 -1.53 -20.71 16 12 C 0.18 9.44 4.76 71.24 0.34 9.78 16 13 C -0.54 -34.31 9.99 25.60 0.26 -34.05 16 14 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 15 C 0.01 0.72 5.47 84.65 0.46 1.18 16 16 N -0.94 -60.80 13.96 21.45 0.30 -60.50 16 17 Si 0.96 44.54 27.47 68.60 1.88 46.43 16 18 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 20 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 21 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.08 1.56 8.13 -2.39 -0.02 1.54 16 23 H 0.06 1.40 6.42 -2.39 -0.02 1.38 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.72 6.46 -2.38 -0.02 1.71 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.57 8.04 -2.39 -0.02 1.56 16 33 H 0.08 2.46 5.52 -2.39 -0.01 2.45 16 34 H 0.04 1.46 6.53 -2.39 -0.02 1.44 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.00 0.22 7.58 -2.39 -0.02 0.20 16 37 H 0.01 0.49 7.19 -2.39 -0.02 0.47 16 38 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 Total: -1.00 -72.20 295.78 1.44 -70.76 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.94 Total: 8.91 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 3.66 Total: -24.57 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -3.52 Total: -80.82 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -1.53 Total: -20.71 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.43 kcal Total: -72.20 1.44 -70.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385385634.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.677 kcal (2) G-P(sol) polarization free energy of solvation -72.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds