Wall clock time and date at job start Sun Mar 29 2020 22:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.29241 * 2 1 4 4 C 1.54263 * 110.32489 * 237.87051 * 2 1 3 5 5 C 1.54380 * 105.06391 * 241.10669 * 4 2 1 6 6 H 1.08997 * 110.40751 * 94.92541 * 5 4 2 7 7 C 1.53003 * 110.40989 * 217.36911 * 5 4 2 8 8 N 1.48555 * 104.59050 * 336.14671 * 5 4 2 9 9 C 1.46905 * 110.99643 * 159.04356 * 8 5 4 10 10 C 1.53004 * 109.47225 * 169.99968 * 9 8 5 11 11 O 1.42904 * 109.46976 * 64.99376 * 10 9 8 12 12 C 1.42898 * 113.99522 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47060 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 C 1.48561 * 104.22597 * 39.48337 * 8 5 4 22 22 H 1.08995 * 109.47186 * 182.12779 * 1 2 3 23 23 H 1.09001 * 109.47235 * 302.12647 * 1 2 3 24 24 H 1.08999 * 109.46806 * 62.12258 * 1 2 3 25 25 H 1.09003 * 110.32006 * 122.20823 * 4 2 1 26 26 H 1.09003 * 110.32136 * 0.02562 * 4 2 1 27 27 H 1.09004 * 109.46648 * 175.17293 * 7 5 4 28 28 H 1.08998 * 109.46779 * 295.17042 * 7 5 4 29 29 H 1.08998 * 109.47068 * 55.16862 * 7 5 4 30 30 H 1.09000 * 109.47280 * 49.99612 * 9 8 5 31 31 H 1.09005 * 109.46911 * 289.99394 * 9 8 5 32 32 H 1.08994 * 109.46944 * 304.99976 * 10 9 8 33 33 H 1.08998 * 109.47249 * 184.99535 * 10 9 8 34 34 H 1.09004 * 109.47106 * 60.00836 * 12 11 10 35 35 H 1.08993 * 109.47575 * 300.00461 * 12 11 10 36 36 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 37 37 H 1.08998 * 110.40997 * 79.29473 * 21 8 5 38 38 H 1.08995 * 110.41169 * 201.73683 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0658 -0.7693 -1.2250 5 6 2.8806 -1.9417 -0.6376 6 1 2.2647 -2.8387 -0.5747 7 6 4.1249 -2.2056 -1.4881 8 7 3.2693 -1.4836 0.7210 9 6 3.6068 -2.6233 1.5843 10 6 4.2358 -2.1117 2.8818 11 8 3.2691 -1.3559 3.6141 12 6 3.7572 -0.8301 4.8499 13 6 2.6608 -0.0548 5.5341 14 1 1.6884 0.0276 5.0715 15 6 2.8991 0.5491 6.7503 16 7 4.0817 0.4442 7.3161 17 14 1.5399 1.5094 7.5987 18 1 2.0453 2.0509 8.8858 19 1 1.1069 2.6303 6.7260 20 1 0.3868 0.6105 7.8586 21 6 2.0662 -0.7722 1.2245 22 1 -0.3633 -1.0269 0.0382 23 1 -0.3634 0.5465 0.8703 24 1 -0.3633 0.4805 -0.9084 25 1 2.7082 -0.1250 -1.8254 26 1 1.2388 -1.1466 -1.8266 27 1 4.7321 -2.9767 -1.0139 28 1 3.8224 -2.5404 -2.4803 29 1 4.7063 -1.2879 -1.5758 30 1 4.3145 -3.2726 1.0687 31 1 2.7013 -3.1842 1.8160 32 1 5.0901 -1.4772 2.6459 33 1 4.5669 -2.9581 3.4835 34 1 4.6018 -0.1691 4.6552 35 1 4.0782 -1.6501 5.4922 36 1 4.7875 -0.0547 6.8758 37 1 1.3229 -1.4863 1.5789 38 1 2.3394 -0.0799 2.0207 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385395909.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:13 Heat of formation + Delta-G solvation = -64.314450 kcal Electronic energy + Delta-G solvation = -16393.057769 eV Core-core repulsion = 13848.699678 eV Total energy + Delta-G solvation = -2544.358091 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.25543 -36.73632 -33.63534 -32.82880 -31.65255 -28.62513 -26.73239 -26.11481 -24.62330 -22.47838 -21.58742 -20.20420 -19.72618 -16.93945 -15.91393 -15.77756 -15.34193 -14.58258 -14.22724 -13.74709 -13.61585 -13.36761 -13.06278 -12.62802 -12.45236 -12.15609 -11.99244 -11.82855 -11.61044 -11.19301 -10.96200 -10.85797 -10.67354 -10.58101 -10.45440 -10.27319 -10.11131 -10.03223 -8.79864 -8.60802 -8.23134 -8.16531 -6.44387 -4.12821 3.43444 3.46213 3.64955 4.17092 4.45921 4.70991 4.78943 4.84410 5.05230 5.22587 5.33596 5.38681 5.45945 5.47005 5.63844 5.70758 5.73030 5.80338 5.84148 5.92788 6.00183 6.04269 6.10203 6.13487 6.22302 6.28194 6.33359 6.49460 6.73576 6.81710 7.17237 7.19512 7.33940 7.92159 8.20918 8.65832 8.83537 9.57897 10.95827 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031433 B = 0.006434 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.579204 B = 4350.782061 C = 5070.446727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.077 0.923 4 C -0.114 4.114 5 C 0.053 3.947 6 H 0.046 0.954 7 C -0.134 4.134 8 N -0.502 5.502 9 C 0.050 3.950 10 C 0.065 3.935 11 O -0.383 6.383 12 C 0.187 3.813 13 C -0.594 4.594 14 H 0.059 0.941 15 C 0.017 3.983 16 N -0.911 5.911 17 Si 1.078 2.922 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.286 1.286 21 C 0.049 3.951 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.038 0.962 34 H -0.005 1.005 35 H -0.008 1.008 36 H 0.267 0.733 37 H 0.042 0.958 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 -4.357 -16.341 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.095 0.905 4 C -0.152 4.152 5 C -0.056 4.056 6 H 0.064 0.936 7 C -0.192 4.192 8 N -0.227 5.227 9 C -0.078 4.078 10 C -0.013 4.013 11 O -0.303 6.303 12 C 0.112 3.888 13 C -0.632 4.632 14 H 0.077 0.923 15 C -0.187 4.187 16 N -0.548 5.548 17 Si 0.905 3.095 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.213 1.213 21 C -0.078 4.078 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.012 0.988 35 H 0.010 0.990 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.220 -3.107 -15.043 15.694 hybrid contribution 0.069 -1.662 -1.199 2.051 sum -3.151 -4.770 -16.242 17.218 Atomic orbital electron populations 1.21840 0.95018 1.01524 1.01592 1.21957 0.95271 1.00047 0.94871 0.90489 1.22433 0.98795 0.96615 0.97367 1.22649 0.95622 0.96539 0.90780 0.93641 1.21707 0.97238 1.01979 0.98269 1.65365 1.34283 1.22083 1.00962 1.22277 0.99856 0.92434 0.93233 1.22273 0.92716 0.94873 0.91428 1.87884 1.37187 1.69819 1.35402 1.20247 0.95787 0.92205 0.80555 1.21879 0.98979 1.35350 1.07005 0.92275 1.25910 1.01104 0.97032 0.94609 1.70795 1.03073 1.40133 1.40758 0.83423 0.74059 0.75953 0.76075 1.20643 1.21211 1.21281 1.23228 0.90153 0.97755 0.96711 0.93020 0.92246 0.92931 0.91280 0.91753 0.92921 0.92758 0.91878 0.90424 0.94223 0.93671 0.94399 0.98753 0.99007 0.92305 0.93922 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.92 37.16 0.33 -1.38 16 2 C -0.10 -1.40 3.65 -89.24 -0.33 -1.73 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.11 -1.35 6.20 -25.35 -0.16 -1.51 16 5 C 0.05 0.68 2.87 -66.07 -0.19 0.49 16 6 H 0.05 0.58 8.00 -51.93 -0.42 0.16 16 7 C -0.13 -1.46 9.36 37.16 0.35 -1.12 16 8 N -0.50 -8.06 5.02 -222.14 -1.11 -9.18 16 9 C 0.05 0.81 5.34 -3.82 -0.02 0.79 16 10 C 0.07 1.26 6.26 37.16 0.23 1.49 16 11 O -0.38 -9.30 7.81 -35.23 -0.28 -9.58 16 12 C 0.19 5.17 5.00 36.01 0.18 5.35 16 13 C -0.59 -17.76 9.43 -34.44 -0.32 -18.09 16 14 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 15 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 16 N -0.91 -28.27 13.65 55.43 0.76 -27.52 16 17 Si 1.08 25.67 29.90 -169.99 -5.08 20.59 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.05 0.84 4.89 -2.18 -0.01 0.83 16 22 H 0.05 0.61 8.10 -51.93 -0.42 0.19 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.78 7.82 -51.93 -0.41 0.37 16 26 H 0.06 0.67 7.71 -51.93 -0.40 0.27 16 27 H 0.05 0.56 7.28 -51.93 -0.38 0.19 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 30 H 0.08 1.05 7.16 -51.93 -0.37 0.67 16 31 H 0.04 0.65 7.77 -51.93 -0.40 0.25 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H -0.01 -0.15 8.01 -51.93 -0.42 -0.56 16 35 H -0.01 -0.22 8.00 -51.93 -0.42 -0.63 16 36 H 0.27 8.25 7.22 -40.82 -0.29 7.96 16 37 H 0.04 0.76 7.44 -51.93 -0.39 0.37 16 38 H 0.10 2.12 6.83 -51.93 -0.35 1.76 16 LS Contribution 301.19 15.07 4.54 4.54 Total: -1.00 -31.46 301.19 -8.04 -39.50 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -6.82 Total: -3.86 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -0.03 Total: -14.49 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.36 Total: -36.69 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.28 Total: -9.58 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.46 -8.04 -39.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385395909.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.819 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds