Wall clock time and date at job start Sun Mar 29 2020 22:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.29241 * 2 1 4 4 C 1.54263 * 110.32489 * 237.87051 * 2 1 3 5 5 C 1.54380 * 105.06391 * 241.10669 * 4 2 1 6 6 H 1.08997 * 110.40751 * 94.92541 * 5 4 2 7 7 C 1.53003 * 110.40989 * 217.36911 * 5 4 2 8 8 N 1.48555 * 104.59050 * 336.14671 * 5 4 2 9 9 C 1.46905 * 110.99643 * 159.04356 * 8 5 4 10 10 C 1.53004 * 109.47225 * 169.99968 * 9 8 5 11 11 O 1.42904 * 109.46976 * 64.99376 * 10 9 8 12 12 C 1.42898 * 113.99522 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47060 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 C 1.48561 * 104.22597 * 39.48337 * 8 5 4 22 22 H 1.08995 * 109.47186 * 182.12779 * 1 2 3 23 23 H 1.09001 * 109.47235 * 302.12647 * 1 2 3 24 24 H 1.08999 * 109.46806 * 62.12258 * 1 2 3 25 25 H 1.09003 * 110.32006 * 122.20823 * 4 2 1 26 26 H 1.09003 * 110.32136 * 0.02562 * 4 2 1 27 27 H 1.09004 * 109.46648 * 175.17293 * 7 5 4 28 28 H 1.08998 * 109.46779 * 295.17042 * 7 5 4 29 29 H 1.08998 * 109.47068 * 55.16862 * 7 5 4 30 30 H 1.09000 * 109.47280 * 49.99612 * 9 8 5 31 31 H 1.09005 * 109.46911 * 289.99394 * 9 8 5 32 32 H 1.08994 * 109.46944 * 304.99976 * 10 9 8 33 33 H 1.08998 * 109.47249 * 184.99535 * 10 9 8 34 34 H 1.09004 * 109.47106 * 60.00836 * 12 11 10 35 35 H 1.08993 * 109.47575 * 300.00461 * 12 11 10 36 36 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 37 37 H 1.08998 * 110.40997 * 79.29473 * 21 8 5 38 38 H 1.08995 * 110.41169 * 201.73683 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0658 -0.7693 -1.2250 5 6 2.8806 -1.9417 -0.6376 6 1 2.2647 -2.8387 -0.5747 7 6 4.1249 -2.2056 -1.4881 8 7 3.2693 -1.4836 0.7210 9 6 3.6068 -2.6233 1.5843 10 6 4.2358 -2.1117 2.8818 11 8 3.2691 -1.3559 3.6141 12 6 3.7572 -0.8301 4.8499 13 6 2.6608 -0.0548 5.5341 14 1 1.6884 0.0276 5.0715 15 6 2.8991 0.5491 6.7503 16 7 4.0817 0.4442 7.3161 17 14 1.5399 1.5094 7.5987 18 1 2.0453 2.0509 8.8858 19 1 1.1069 2.6303 6.7260 20 1 0.3868 0.6105 7.8586 21 6 2.0662 -0.7722 1.2245 22 1 -0.3633 -1.0269 0.0382 23 1 -0.3634 0.5465 0.8703 24 1 -0.3633 0.4805 -0.9084 25 1 2.7082 -0.1250 -1.8254 26 1 1.2388 -1.1466 -1.8266 27 1 4.7321 -2.9767 -1.0139 28 1 3.8224 -2.5404 -2.4803 29 1 4.7063 -1.2879 -1.5758 30 1 4.3145 -3.2726 1.0687 31 1 2.7013 -3.1842 1.8160 32 1 5.0901 -1.4772 2.6459 33 1 4.5669 -2.9581 3.4835 34 1 4.6018 -0.1691 4.6552 35 1 4.0782 -1.6501 5.4922 36 1 4.7875 -0.0547 6.8758 37 1 1.3229 -1.4863 1.5789 38 1 2.3394 -0.0799 2.0207 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385395909.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:13 Heat of formation + Delta-G solvation = -85.056028 kcal Electronic energy + Delta-G solvation = -16393.957191 eV Core-core repulsion = 13848.699678 eV Total energy + Delta-G solvation = -2545.257513 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.46204 -38.58549 -35.41954 -34.49793 -32.79959 -30.11503 -28.52311 -27.38212 -25.90383 -24.72152 -22.95793 -21.40772 -20.79716 -19.17830 -17.60840 -17.25879 -16.60368 -16.00631 -15.76479 -15.61126 -15.18352 -14.66113 -14.53746 -13.93148 -13.76493 -13.63574 -13.33573 -13.13844 -12.90337 -12.70178 -12.61230 -12.41595 -12.03400 -11.92998 -11.83237 -11.62526 -11.39714 -11.36351 -10.85646 -10.84485 -10.33647 -9.45576 -8.84632 -6.55380 1.50942 1.60093 1.81157 2.48298 2.97130 3.02463 3.06744 3.63216 3.71784 3.98474 4.13863 4.21841 4.24066 4.38912 4.45653 4.48468 4.51774 4.56399 4.66238 4.72738 4.81660 4.85017 4.87881 4.91832 4.94850 5.11231 5.12439 5.19957 5.38108 5.40165 5.41652 5.66213 5.90826 5.96223 6.12249 6.31554 6.64777 7.25738 8.56299 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031433 B = 0.006434 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.579204 B = 4350.782061 C = 5070.446727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 H 0.069 0.931 4 C -0.107 4.107 5 C 0.050 3.950 6 H 0.052 0.948 7 C -0.130 4.130 8 N -0.518 5.518 9 C 0.059 3.941 10 C 0.056 3.944 11 O -0.393 6.393 12 C 0.198 3.802 13 C -0.619 4.619 14 H 0.053 0.947 15 C -0.029 4.029 16 N -0.928 5.928 17 Si 1.127 2.873 18 H -0.276 1.276 19 H -0.267 1.267 20 H -0.267 1.267 21 C 0.052 3.948 22 H 0.054 0.946 23 H 0.045 0.955 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.111 0.889 31 H 0.036 0.964 32 H 0.040 0.960 33 H 0.049 0.951 34 H -0.023 1.023 35 H -0.020 1.020 36 H 0.254 0.746 37 H 0.029 0.971 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.234 -4.652 -18.097 19.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.120 4.120 3 H 0.087 0.913 4 C -0.145 4.145 5 C -0.057 4.057 6 H 0.070 0.930 7 C -0.187 4.187 8 N -0.243 5.243 9 C -0.070 4.070 10 C -0.021 4.021 11 O -0.312 6.312 12 C 0.123 3.877 13 C -0.657 4.657 14 H 0.071 0.929 15 C -0.226 4.226 16 N -0.565 5.565 17 Si 0.946 3.054 18 H -0.200 1.200 19 H -0.192 1.192 20 H -0.192 1.192 21 C -0.076 4.076 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.129 0.871 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.067 0.933 34 H -0.006 1.006 35 H -0.003 1.003 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.276 -3.429 -16.838 17.708 hybrid contribution 0.474 -1.626 -0.718 1.840 sum -3.802 -5.055 -17.556 18.661 Atomic orbital electron populations 1.21808 0.93593 1.01856 1.02246 1.21939 0.96475 0.99356 0.94246 0.91279 1.22439 0.99495 0.96048 0.96494 1.22797 0.96924 0.97089 0.88918 0.93021 1.21692 0.96125 1.01764 0.99134 1.65328 1.33975 1.22414 1.02569 1.22246 1.00274 0.92628 0.91818 1.22605 0.92209 0.94531 0.92775 1.87879 1.38654 1.70451 1.34234 1.19909 0.94675 0.91349 0.81812 1.22218 0.99272 1.36296 1.07864 0.92896 1.27609 1.02559 0.97226 0.95256 1.70925 1.03667 1.40842 1.41057 0.82838 0.71671 0.75480 0.75432 1.20047 1.19209 1.19170 1.23034 0.90442 0.97068 0.97102 0.92666 0.93551 0.90478 0.90373 0.89440 0.92764 0.90253 0.92591 0.87089 0.94571 0.94141 0.93328 1.00565 1.00286 0.93638 0.95238 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.92 71.98 0.64 -2.47 16 2 C -0.10 -2.69 3.65 -9.90 -0.04 -2.72 16 3 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 4 C -0.11 -2.25 6.20 31.49 0.20 -2.05 16 5 C 0.05 1.17 2.87 45.06 0.13 1.30 16 6 H 0.05 1.16 8.00 -2.39 -0.02 1.14 16 7 C -0.13 -2.42 9.36 71.98 0.67 -1.75 16 8 N -0.52 -16.29 5.02 -856.71 -4.30 -20.59 16 9 C 0.06 1.84 5.34 86.30 0.46 2.30 16 10 C 0.06 2.20 6.26 71.98 0.45 2.65 16 11 O -0.39 -19.77 7.81 -148.98 -1.16 -20.94 16 12 C 0.20 11.41 5.00 71.24 0.36 11.77 16 13 C -0.62 -38.00 9.43 25.60 0.24 -37.76 16 14 H 0.05 3.24 7.81 -2.91 -0.02 3.22 16 15 C -0.03 -1.74 5.46 84.65 0.46 -1.28 16 16 N -0.93 -58.54 13.65 21.45 0.29 -58.25 16 17 Si 1.13 51.17 29.90 68.60 2.05 53.23 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 C 0.05 1.80 4.89 86.45 0.42 2.22 16 22 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 23 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.08 1.52 7.82 -2.39 -0.02 1.50 16 26 H 0.09 1.47 7.71 -2.39 -0.02 1.45 16 27 H 0.05 0.99 7.28 -2.39 -0.02 0.98 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.13 8.09 -2.39 -0.02 1.11 16 30 H 0.11 2.73 7.16 -2.39 -0.02 2.71 16 31 H 0.04 1.16 7.77 -2.38 -0.02 1.14 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H -0.02 -1.40 8.01 -2.39 -0.02 -1.42 16 35 H -0.02 -1.21 8.00 -2.39 -0.02 -1.23 16 36 H 0.25 16.26 7.22 -92.71 -0.67 15.59 16 37 H 0.03 1.08 7.44 -2.39 -0.02 1.06 16 38 H 0.05 2.39 6.83 -2.39 -0.02 2.37 16 Total: -1.00 -69.23 301.19 1.97 -67.26 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.09 Total: 7.08 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 4.00 Total: -27.79 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -4.01 Total: -78.84 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -1.16 Total: -20.94 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.05 Total: 53.23 kcal Total: -69.23 1.97 -67.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385395909.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.799 kcal (2) G-P(sol) polarization free energy of solvation -69.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds