Wall clock time and date at job start Sun Mar 29 2020 22:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.28638 * 2 1 4 4 C 1.54259 * 110.32798 * 122.12728 * 2 1 3 5 5 C 1.54380 * 105.05910 * 118.89552 * 4 2 1 6 6 H 1.09002 * 110.40857 * 265.07313 * 5 4 2 7 7 C 1.53000 * 110.40999 * 142.75448 * 5 4 2 8 8 N 1.48558 * 104.59477 * 23.85602 * 5 4 2 9 9 C 1.46903 * 110.99469 * 200.95943 * 8 5 4 10 10 C 1.53005 * 109.46611 * 190.00168 * 9 8 5 11 11 O 1.42905 * 109.47256 * 65.00022 * 10 9 8 12 12 C 1.42899 * 114.00000 * 179.97438 * 11 10 9 13 13 C 1.50691 * 109.47179 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00109 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99942 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00275 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99861 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47251 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47124 * 120.00011 * 17 15 13 20 20 H 1.48500 * 109.47252 * 240.00058 * 17 15 13 21 21 C 1.48718 * 104.28679 * 320.56887 * 8 5 4 22 22 H 1.09002 * 109.47153 * 299.29716 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.29907 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.29888 * 1 2 3 25 25 H 1.08998 * 110.32579 * 237.79142 * 4 2 1 26 26 H 1.09002 * 110.32009 * 359.97438 * 4 2 1 27 27 H 1.08999 * 109.47435 * 61.45167 * 7 5 4 28 28 H 1.08998 * 109.47075 * 181.45339 * 7 5 4 29 29 H 1.08998 * 109.47134 * 301.45226 * 7 5 4 30 30 H 1.09005 * 109.47168 * 309.99523 * 9 8 5 31 31 H 1.08995 * 109.47226 * 70.00494 * 9 8 5 32 32 H 1.09004 * 109.47134 * 184.99964 * 10 9 8 33 33 H 1.09001 * 109.46864 * 304.99595 * 10 9 8 34 34 H 1.09007 * 109.46935 * 300.00374 * 12 11 10 35 35 H 1.08999 * 109.47036 * 59.99786 * 12 11 10 36 36 H 0.97002 * 120.00367 * 179.97438 * 16 15 13 37 37 H 1.08997 * 110.39015 * 280.64158 * 21 8 5 38 38 H 1.09003 * 110.50177 * 158.14426 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0659 -0.7693 1.2250 5 6 2.8807 -1.9415 0.6375 6 1 2.2648 -2.8387 0.5746 7 6 4.1234 -2.2074 1.4895 8 7 3.2694 -1.4834 -0.7212 9 6 3.6068 -2.6232 -1.5844 10 6 4.2358 -2.1114 -2.8819 11 8 5.4823 -1.4768 -2.5891 12 6 6.1562 -0.9611 -3.7388 13 6 7.4510 -0.3169 -3.3153 14 1 7.7311 -0.3024 -2.2723 15 6 8.2781 0.2539 -4.2593 16 7 7.9373 0.2358 -5.5293 17 14 9.8835 1.0518 -3.7343 18 1 10.0341 0.9386 -2.2613 19 1 11.0188 0.3654 -4.4016 20 1 9.8742 2.4850 -4.1227 21 6 2.0662 -0.7699 -1.2260 22 1 -0.3633 0.5029 0.8962 23 1 -0.3633 -1.0276 -0.0126 24 1 -0.3634 0.5247 -0.8837 25 1 2.7082 -0.1250 1.8253 26 1 1.2388 -1.1465 1.8266 27 1 3.8194 -2.4853 2.4987 28 1 4.7001 -3.0197 1.0473 29 1 4.7359 -1.3068 1.5296 30 1 4.3146 -3.2724 -1.0689 31 1 2.7014 -3.1840 -1.8162 32 1 4.4047 -2.9489 -3.5589 33 1 3.5643 -1.3934 -3.3527 34 1 6.3649 -1.7751 -4.4332 35 1 5.5247 -0.2194 -4.2278 36 1 8.5190 0.6377 -6.1934 37 1 1.3229 -1.4833 -1.5818 38 1 2.3394 -0.0759 -2.0210 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385395913.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:16 Heat of formation + Delta-G solvation = -58.648124 kcal Electronic energy + Delta-G solvation = -16161.943352 eV Core-core repulsion = 13617.830971 eV Total energy + Delta-G solvation = -2544.112380 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.29633 -36.51792 -33.59184 -32.59578 -31.72353 -28.62481 -26.95897 -26.24093 -24.90857 -22.23607 -21.57991 -20.15979 -19.82516 -16.34210 -15.81129 -15.64831 -15.46844 -14.57897 -14.31684 -14.10631 -13.60616 -13.37644 -13.03487 -12.73074 -12.49562 -12.00360 -11.93783 -11.85454 -11.39057 -11.27761 -10.94177 -10.78302 -10.72959 -10.63845 -10.45109 -10.42125 -10.28408 -9.90668 -8.99434 -8.72568 -8.16198 -8.04383 -6.04007 -4.04505 3.33787 3.39930 3.47322 4.11358 4.41590 4.61246 4.70296 4.95363 4.98917 5.15333 5.32571 5.34620 5.44319 5.52822 5.56562 5.65679 5.68786 5.75089 5.78792 5.85262 5.95514 6.02415 6.05824 6.10214 6.16783 6.28407 6.33874 6.41060 6.46774 7.14330 7.19416 7.33285 7.52359 7.88511 8.25224 8.71221 9.11166 9.60222 11.07850 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033258 B = 0.005439 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.711184 B = 5146.577662 C = 5244.563831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.080 0.920 4 C -0.115 4.115 5 C 0.057 3.943 6 H 0.044 0.956 7 C -0.135 4.135 8 N -0.490 5.490 9 C 0.050 3.950 10 C 0.071 3.929 11 O -0.379 6.379 12 C 0.194 3.806 13 C -0.508 4.508 14 H 0.067 0.933 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.036 3.964 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.034 0.966 34 H 0.001 0.999 35 H 0.002 0.998 36 H 0.262 0.738 37 H 0.039 0.961 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.999 -3.771 11.073 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.098 0.902 4 C -0.153 4.153 5 C -0.051 4.051 6 H 0.062 0.938 7 C -0.193 4.193 8 N -0.214 5.214 9 C -0.078 4.078 10 C -0.008 4.008 11 O -0.299 6.299 12 C 0.119 3.881 13 C -0.546 4.546 14 H 0.085 0.915 15 C -0.146 4.146 16 N -0.541 5.541 17 Si 0.734 3.266 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.092 4.092 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.019 0.981 35 H 0.020 0.980 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.368 -3.367 11.088 17.691 hybrid contribution 0.018 -0.176 -0.394 0.432 sum -13.350 -3.543 10.694 17.468 Atomic orbital electron populations 1.21858 0.95034 1.01461 1.01648 1.21876 0.94971 1.00221 0.94688 0.90181 1.22436 0.98852 0.96795 0.97191 1.22618 0.95789 0.96080 0.90610 0.93841 1.21697 0.97132 1.02693 0.97787 1.65375 1.32260 1.22692 1.01052 1.22315 0.98483 0.92364 0.94661 1.22168 0.88446 0.95785 0.94374 1.87944 1.31424 1.75624 1.34861 1.20169 0.91676 0.92591 0.83636 1.21111 1.03119 1.35731 0.94649 0.91486 1.24947 0.98676 0.96294 0.94692 1.69978 1.37958 1.45581 1.00567 0.86304 0.82620 0.78811 0.78902 1.19461 1.20936 1.20903 1.23249 0.90931 0.97515 0.97468 0.92641 0.92970 0.92588 0.90929 0.91709 0.92909 0.92622 0.91406 0.90187 0.94324 0.94525 0.94793 0.98086 0.97985 0.92840 0.94275 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.91 37.16 0.33 -0.99 16 2 C -0.10 -1.15 3.65 -89.24 -0.33 -1.48 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -1.30 6.20 -25.35 -0.16 -1.46 16 5 C 0.06 0.75 2.87 -66.07 -0.19 0.56 16 6 H 0.04 0.53 8.00 -51.93 -0.42 0.11 16 7 C -0.14 -1.74 9.32 37.16 0.35 -1.39 16 8 N -0.49 -7.83 4.97 -221.99 -1.10 -8.93 16 9 C 0.05 0.81 5.16 -3.82 -0.02 0.79 16 10 C 0.07 1.38 6.13 37.16 0.23 1.61 16 11 O -0.38 -9.61 10.27 -35.23 -0.36 -9.97 16 12 C 0.19 5.53 5.69 36.00 0.20 5.73 16 13 C -0.51 -15.45 9.43 -34.44 -0.32 -15.78 16 14 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 17 Si 0.91 22.38 29.54 -169.99 -5.02 17.36 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 C 0.04 0.51 5.46 -2.09 -0.01 0.49 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.47 8.12 -51.93 -0.42 0.04 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.83 7.86 -51.93 -0.41 0.42 16 26 H 0.06 0.62 7.71 -51.93 -0.40 0.22 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.75 7.36 -51.93 -0.38 0.36 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.30 7.21 -51.93 -0.37 0.92 16 31 H 0.04 0.53 7.77 -51.93 -0.40 0.12 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.03 0.66 7.28 -51.93 -0.38 0.28 16 34 H 0.00 0.04 8.14 -51.92 -0.42 -0.38 16 35 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.04 0.50 7.46 -51.93 -0.39 0.11 16 38 H 0.08 1.27 7.74 -51.93 -0.40 0.87 16 LS Contribution 305.44 15.07 4.60 4.60 Total: -1.00 -32.09 305.44 -8.06 -40.16 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -6.90 Total: -5.94 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -0.02 Total: -10.40 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.37 Total: -35.81 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.36 Total: -9.97 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.09 -8.06 -40.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385395913.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.491 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds