Wall clock time and date at job start Sun Mar 29 2020 22:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.28638 * 2 1 4 4 C 1.54259 * 110.32798 * 122.12728 * 2 1 3 5 5 C 1.54380 * 105.05910 * 118.89552 * 4 2 1 6 6 H 1.09002 * 110.40857 * 265.07313 * 5 4 2 7 7 C 1.53000 * 110.40999 * 142.75448 * 5 4 2 8 8 N 1.48558 * 104.59477 * 23.85602 * 5 4 2 9 9 C 1.46903 * 110.99469 * 200.95943 * 8 5 4 10 10 C 1.53005 * 109.46611 * 190.00168 * 9 8 5 11 11 O 1.42905 * 109.47256 * 65.00022 * 10 9 8 12 12 C 1.42899 * 114.00000 * 179.97438 * 11 10 9 13 13 C 1.50691 * 109.47179 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00109 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99942 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00275 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99861 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47251 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47124 * 120.00011 * 17 15 13 20 20 H 1.48500 * 109.47252 * 240.00058 * 17 15 13 21 21 C 1.48718 * 104.28679 * 320.56887 * 8 5 4 22 22 H 1.09002 * 109.47153 * 299.29716 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.29907 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.29888 * 1 2 3 25 25 H 1.08998 * 110.32579 * 237.79142 * 4 2 1 26 26 H 1.09002 * 110.32009 * 359.97438 * 4 2 1 27 27 H 1.08999 * 109.47435 * 61.45167 * 7 5 4 28 28 H 1.08998 * 109.47075 * 181.45339 * 7 5 4 29 29 H 1.08998 * 109.47134 * 301.45226 * 7 5 4 30 30 H 1.09005 * 109.47168 * 309.99523 * 9 8 5 31 31 H 1.08995 * 109.47226 * 70.00494 * 9 8 5 32 32 H 1.09004 * 109.47134 * 184.99964 * 10 9 8 33 33 H 1.09001 * 109.46864 * 304.99595 * 10 9 8 34 34 H 1.09007 * 109.46935 * 300.00374 * 12 11 10 35 35 H 1.08999 * 109.47036 * 59.99786 * 12 11 10 36 36 H 0.97002 * 120.00367 * 179.97438 * 16 15 13 37 37 H 1.08997 * 110.39015 * 280.64158 * 21 8 5 38 38 H 1.09003 * 110.50177 * 158.14426 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0659 -0.7693 1.2250 5 6 2.8807 -1.9415 0.6375 6 1 2.2648 -2.8387 0.5746 7 6 4.1234 -2.2074 1.4895 8 7 3.2694 -1.4834 -0.7212 9 6 3.6068 -2.6232 -1.5844 10 6 4.2358 -2.1114 -2.8819 11 8 5.4823 -1.4768 -2.5891 12 6 6.1562 -0.9611 -3.7388 13 6 7.4510 -0.3169 -3.3153 14 1 7.7311 -0.3024 -2.2723 15 6 8.2781 0.2539 -4.2593 16 7 7.9373 0.2358 -5.5293 17 14 9.8835 1.0518 -3.7343 18 1 10.0341 0.9386 -2.2613 19 1 11.0188 0.3654 -4.4016 20 1 9.8742 2.4850 -4.1227 21 6 2.0662 -0.7699 -1.2260 22 1 -0.3633 0.5029 0.8962 23 1 -0.3633 -1.0276 -0.0126 24 1 -0.3634 0.5247 -0.8837 25 1 2.7082 -0.1250 1.8253 26 1 1.2388 -1.1465 1.8266 27 1 3.8194 -2.4853 2.4987 28 1 4.7001 -3.0197 1.0473 29 1 4.7359 -1.3068 1.5296 30 1 4.3146 -3.2724 -1.0689 31 1 2.7014 -3.1840 -1.8162 32 1 4.4047 -2.9489 -3.5589 33 1 3.5643 -1.3934 -3.3527 34 1 6.3649 -1.7751 -4.4332 35 1 5.5247 -0.2194 -4.2278 36 1 8.5190 0.6377 -6.1934 37 1 1.3229 -1.4833 -1.5818 38 1 2.3394 -0.0759 -2.0210 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385395913.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:16 Heat of formation + Delta-G solvation = -80.192089 kcal Electronic energy + Delta-G solvation = -16162.877568 eV Core-core repulsion = 13617.830971 eV Total energy + Delta-G solvation = -2545.046597 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.39328 -38.40041 -35.12641 -34.41725 -32.87130 -30.19767 -28.73914 -27.36131 -26.05316 -24.48252 -22.88858 -21.29657 -20.79898 -18.62629 -17.44364 -17.09190 -16.60202 -16.41792 -15.89145 -15.58318 -15.02673 -14.52583 -14.50409 -13.87868 -13.55712 -13.51599 -13.29189 -13.10569 -12.80758 -12.70967 -12.70106 -12.52516 -12.19525 -11.94330 -11.71784 -11.66123 -11.38378 -11.33092 -11.23738 -10.86139 -10.18980 -9.29320 -8.32142 -6.44194 1.39163 1.41079 1.56101 2.35250 2.99815 3.01378 3.23401 3.64000 3.77046 4.01175 4.19944 4.25659 4.28561 4.44247 4.48616 4.53083 4.57504 4.63560 4.73813 4.80826 4.83787 4.89585 4.90197 4.96847 5.05305 5.13598 5.18253 5.24015 5.34711 5.41992 5.45278 5.55551 5.97158 6.06355 6.17510 6.56946 6.86259 7.28216 8.80703 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033258 B = 0.005439 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.711184 B = 5146.577662 C = 5244.563831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 H 0.066 0.934 4 C -0.110 4.110 5 C 0.056 3.944 6 H 0.061 0.939 7 C -0.133 4.133 8 N -0.525 5.525 9 C 0.059 3.941 10 C 0.061 3.939 11 O -0.395 6.395 12 C 0.209 3.791 13 C -0.545 4.545 14 H 0.059 0.941 15 C 0.006 3.994 16 N -0.932 5.932 17 Si 0.984 3.016 18 H -0.265 1.265 19 H -0.269 1.269 20 H -0.270 1.270 21 C 0.035 3.965 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.033 0.967 34 H -0.016 1.016 35 H -0.020 1.020 36 H 0.271 0.729 37 H 0.055 0.945 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.527 -3.924 12.434 19.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.116 4.116 3 H 0.084 0.916 4 C -0.147 4.147 5 C -0.051 4.051 6 H 0.078 0.922 7 C -0.191 4.191 8 N -0.250 5.250 9 C -0.069 4.069 10 C -0.016 4.016 11 O -0.314 6.314 12 C 0.134 3.866 13 C -0.582 4.582 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.572 5.572 17 Si 0.807 3.193 18 H -0.189 1.189 19 H -0.194 1.194 20 H -0.196 1.196 21 C -0.093 4.093 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.002 0.998 35 H -0.003 1.003 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.922 -3.532 12.454 19.011 hybrid contribution 0.117 -0.160 -0.847 0.870 sum -13.805 -3.692 11.607 18.410 Atomic orbital electron populations 1.21805 0.92786 1.02266 1.02438 1.21866 0.96770 0.99141 0.93846 0.91552 1.22436 0.99318 0.95999 0.96995 1.22711 0.96145 0.97361 0.88911 0.92155 1.21693 0.96840 1.01156 0.99393 1.65302 1.33955 1.23190 1.02575 1.22202 0.99338 0.92540 0.92809 1.22518 0.86270 0.95663 0.97176 1.87901 1.33762 1.76051 1.33707 1.19787 0.91345 0.91336 0.84116 1.21395 1.04586 1.37594 0.94652 0.92298 1.25972 1.02594 0.96174 0.94484 1.70079 1.39600 1.45702 1.01775 0.85125 0.77391 0.78081 0.78725 1.18947 1.19439 1.19561 1.23249 0.90711 0.97484 0.97828 0.91193 0.92069 0.92553 0.91459 0.89063 0.90113 0.93712 0.93706 0.90484 0.91103 0.93612 0.94902 0.99846 1.00255 0.92045 0.92672 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.91 71.98 0.64 -1.53 16 2 C -0.10 -2.15 3.65 -9.90 -0.04 -2.18 16 3 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 4 C -0.11 -2.24 6.20 31.49 0.20 -2.05 16 5 C 0.06 1.37 2.87 45.06 0.13 1.50 16 6 H 0.06 1.28 8.00 -2.39 -0.02 1.26 16 7 C -0.13 -3.27 9.32 71.98 0.67 -2.60 16 8 N -0.53 -16.55 4.97 -856.25 -4.26 -20.80 16 9 C 0.06 1.87 5.16 86.30 0.45 2.31 16 10 C 0.06 2.44 6.13 71.98 0.44 2.89 16 11 O -0.39 -20.70 10.27 -148.98 -1.53 -22.23 16 12 C 0.21 12.44 5.69 71.23 0.41 12.85 16 13 C -0.54 -33.98 9.43 25.60 0.24 -33.74 16 14 H 0.06 3.68 7.81 -2.91 -0.02 3.65 16 15 C 0.01 0.35 5.46 84.65 0.46 0.81 16 16 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 17 Si 0.98 45.80 29.54 68.60 2.03 47.83 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 21 C 0.04 0.96 5.46 86.42 0.47 1.43 16 22 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.06 0.89 8.12 -2.39 -0.02 0.87 16 24 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.07 1.45 7.86 -2.39 -0.02 1.43 16 26 H 0.09 1.40 7.71 -2.39 -0.02 1.38 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 28 H 0.04 1.17 7.36 -2.39 -0.02 1.15 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 2.45 7.21 -2.38 -0.02 2.43 16 31 H 0.07 1.77 7.77 -2.39 -0.02 1.75 16 32 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.03 1.31 7.28 -2.39 -0.02 1.29 16 34 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 35 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 36 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.06 1.31 7.46 -2.39 -0.02 1.29 16 38 H 0.06 1.77 7.74 -2.39 -0.02 1.75 16 Total: -1.00 -69.84 305.44 1.58 -68.26 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 0.99 Total: 4.62 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 4.07 Total: -20.32 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -3.97 Total: -78.16 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -1.53 Total: -22.23 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -69.84 1.58 -68.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385395913.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.934 kcal (2) G-P(sol) polarization free energy of solvation -69.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds