Wall clock time and date at job start Sun Mar 29 2020 22:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.33531 * 2 1 4 4 C 1.54903 * 110.37700 * 237.62793 * 2 1 3 5 5 C 1.55136 * 101.65526 * 204.10173 * 4 2 1 6 6 H 1.08999 * 110.70510 * 277.09215 * 5 4 2 7 7 C 1.53007 * 110.70637 * 154.03735 * 5 4 2 8 8 C 1.54312 * 103.02178 * 35.65213 * 5 4 2 9 9 N 1.47442 * 107.23295 * 337.71828 * 8 5 4 10 10 C 1.46905 * 111.00159 * 236.74106 * 9 8 5 11 11 C 1.52997 * 109.47150 * 290.84338 * 10 9 8 12 12 O 1.42898 * 109.47319 * 64.99949 * 11 10 9 13 13 C 1.42902 * 114.00186 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47205 * 179.97438 * 13 12 11 15 15 H 1.08008 * 120.00105 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00129 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99722 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00218 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47224 * 59.99769 * 18 16 14 20 20 H 1.48500 * 109.47098 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47074 * 299.99700 * 18 16 14 22 22 H 1.08998 * 109.47140 * 297.74804 * 1 2 3 23 23 H 1.08996 * 109.47075 * 57.74660 * 1 2 3 24 24 H 1.09005 * 109.46893 * 177.75060 * 1 2 3 25 25 H 1.09006 * 110.98980 * 322.19412 * 4 2 1 26 26 H 1.08997 * 110.99510 * 86.00586 * 4 2 1 27 27 H 1.08994 * 109.47706 * 59.99608 * 7 5 4 28 28 H 1.09000 * 109.46813 * 180.02562 * 7 5 4 29 29 H 1.09003 * 109.46432 * 299.99482 * 7 5 4 30 30 H 1.08999 * 109.89263 * 218.30896 * 8 5 4 31 31 H 1.09000 * 109.89296 * 97.12455 * 8 5 4 32 32 H 1.09001 * 109.47063 * 170.83734 * 10 9 8 33 33 H 1.09004 * 109.46681 * 50.84359 * 10 9 8 34 34 H 1.09002 * 109.47153 * 304.99641 * 11 10 9 35 35 H 1.09001 * 109.46832 * 184.99832 * 11 10 9 36 36 H 1.09001 * 109.46918 * 299.99649 * 13 12 11 37 37 H 1.08999 * 109.46857 * 59.99535 * 13 12 11 38 38 H 0.96998 * 119.99585 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0693 -0.7775 -1.2264 5 6 3.4786 -1.2002 -0.7345 6 1 4.1948 -0.3907 -0.8753 7 6 3.9465 -2.4655 -1.4564 8 6 3.2536 -1.4799 0.7663 9 7 2.0447 -0.7397 1.1721 10 6 2.3357 0.1741 2.2850 11 6 2.6245 -0.6378 3.5493 12 8 3.8190 -1.3998 3.3636 13 6 4.1801 -2.1988 4.4920 14 6 5.4469 -2.9557 4.1868 15 1 5.9280 -2.8387 3.2269 16 6 5.9912 -3.7985 5.1325 17 7 5.4052 -3.9413 6.3012 18 14 7.5612 -4.7373 4.7540 19 1 8.6539 -3.7760 4.4586 20 1 7.9364 -5.5675 5.9267 21 1 7.3416 -5.6144 3.5760 22 1 -0.3633 0.4785 0.9095 23 1 -0.3633 0.5484 -0.8691 24 1 -0.3633 -1.0269 -0.0403 25 1 1.4515 -1.6503 -1.4380 26 1 2.1389 -0.1293 -2.1000 27 1 3.9899 -2.2770 -2.5290 28 1 4.9367 -2.7444 -1.0958 29 1 3.2462 -3.2769 -1.2580 30 1 4.1118 -1.1321 1.3411 31 1 3.1056 -2.5479 0.9264 32 1 1.4762 0.8218 2.4575 33 1 3.2054 0.7827 2.0374 34 1 1.7907 -1.3115 3.7468 35 1 2.7528 0.0389 4.3941 36 1 4.3406 -1.5548 5.3567 37 1 3.3785 -2.9049 4.7086 38 1 5.7884 -4.5339 6.9667 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385395914.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:18 Heat of formation + Delta-G solvation = -60.340663 kcal Electronic energy + Delta-G solvation = -16398.458355 eV Core-core repulsion = 13854.272581 eV Total energy + Delta-G solvation = -2544.185774 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.21880 -36.56199 -33.41633 -32.62204 -31.64691 -28.53483 -26.97078 -26.32465 -24.60487 -22.27736 -21.47573 -20.31670 -19.44900 -16.42801 -16.33641 -15.53827 -15.06026 -14.32387 -14.13862 -14.04757 -13.56804 -13.28188 -12.86528 -12.76696 -12.36359 -12.08026 -11.99104 -11.62555 -11.52265 -11.10077 -10.99180 -10.76332 -10.68701 -10.55417 -10.47661 -10.40152 -10.17309 -9.78352 -9.04885 -8.76874 -8.11508 -7.94738 -6.08023 -4.09567 3.33090 3.35954 3.39495 4.21722 4.36782 4.76937 4.78527 4.91218 5.12880 5.28378 5.34865 5.50033 5.51183 5.55587 5.69483 5.76230 5.76765 5.85646 5.95716 6.00042 6.09519 6.13071 6.19157 6.24979 6.31960 6.35894 6.45820 6.64507 6.79587 7.17521 7.40192 7.47841 7.50776 7.81532 8.19643 8.62936 9.03759 9.55107 11.03540 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031535 B = 0.006513 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.678825 B = 4297.923973 C = 5013.803321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.064 3.936 3 H 0.048 0.952 4 C -0.119 4.119 5 C -0.119 4.119 6 H 0.068 0.932 7 C -0.138 4.138 8 C 0.054 3.946 9 N -0.523 5.523 10 C 0.057 3.943 11 C 0.066 3.934 12 O -0.392 6.392 13 C 0.196 3.804 14 C -0.512 4.512 15 H 0.064 0.936 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.906 3.094 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.002 0.998 37 H 0.005 0.995 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.152 7.260 -12.872 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.045 4.045 3 H 0.066 0.934 4 C -0.157 4.157 5 C -0.138 4.138 6 H 0.087 0.913 7 C -0.196 4.196 8 C -0.073 4.073 9 N -0.247 5.247 10 C -0.072 4.072 11 C -0.012 4.012 12 O -0.312 6.312 13 C 0.121 3.879 14 C -0.551 4.551 15 H 0.083 0.917 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.733 3.267 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.200 1.200 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.020 0.980 37 H 0.022 0.978 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.399 6.816 -12.662 16.172 hybrid contribution 1.248 0.069 0.059 1.251 sum -6.151 6.885 -12.603 15.623 Atomic orbital electron populations 1.21683 0.94422 1.02147 1.00780 1.22545 0.95710 0.95866 0.90339 0.93373 1.22810 0.96289 0.99948 0.96662 1.22452 0.96330 0.98161 0.96889 0.91315 1.21703 1.01689 0.97020 0.99166 1.22982 0.92148 0.99918 0.92249 1.63496 1.30194 1.25186 1.05857 1.22300 0.99143 0.93939 0.91790 1.22232 0.89720 0.94301 0.94969 1.87836 1.40550 1.60871 1.41960 1.20158 0.95286 0.88854 0.83558 1.21002 1.08125 1.24778 1.01148 0.91746 1.24939 0.97958 0.96771 0.94802 1.69958 1.40078 1.38139 1.05627 0.86429 0.82825 0.79673 0.77733 1.20095 1.21180 1.20025 0.92866 0.92979 0.92063 0.90728 0.91649 0.93224 0.92322 0.92392 0.89841 0.90414 0.90740 0.94428 0.93681 0.94417 0.98012 0.97760 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 9.59 37.16 0.36 -1.11 16 2 C 0.06 0.82 3.02 -66.19 -0.20 0.62 16 3 H 0.05 0.60 7.81 -51.93 -0.41 0.20 16 4 C -0.12 -1.42 5.94 -24.60 -0.15 -1.56 16 5 C -0.12 -1.62 3.54 -88.80 -0.31 -1.94 16 6 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 7 C -0.14 -1.73 9.16 37.16 0.34 -1.39 16 8 C 0.05 0.93 5.29 -2.84 -0.02 0.91 16 9 N -0.52 -8.36 4.82 -223.38 -1.08 -9.43 16 10 C 0.06 0.90 5.18 -3.82 -0.02 0.88 16 11 C 0.07 1.27 6.23 37.16 0.23 1.50 16 12 O -0.39 -9.37 7.36 -35.23 -0.26 -9.63 16 13 C 0.20 5.41 5.69 36.00 0.20 5.62 16 14 C -0.51 -15.08 9.43 -34.44 -0.32 -15.41 16 15 H 0.06 1.87 7.81 -52.48 -0.41 1.46 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 18 Si 0.91 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 25 H 0.07 0.89 7.95 -51.93 -0.41 0.47 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.73 8.06 -51.93 -0.42 0.31 16 30 H 0.08 1.66 5.73 -51.93 -0.30 1.36 16 31 H 0.08 1.49 7.77 -51.93 -0.40 1.08 16 32 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 33 H 0.04 0.61 7.98 -51.93 -0.41 0.20 16 34 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 303.89 15.07 4.58 4.58 Total: -1.00 -30.37 303.89 -7.99 -38.36 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -6.97 Total: -4.06 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 0.02 Total: -10.34 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: -0.34 Total: -35.85 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.26 Total: -9.63 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.37 -7.99 -38.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385395914.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.978 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds