Wall clock time and date at job start Sun Mar 29 2020 22:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.33531 * 2 1 4 4 C 1.54903 * 110.37700 * 237.62793 * 2 1 3 5 5 C 1.55136 * 101.65526 * 204.10173 * 4 2 1 6 6 H 1.08999 * 110.70510 * 277.09215 * 5 4 2 7 7 C 1.53007 * 110.70637 * 154.03735 * 5 4 2 8 8 C 1.54312 * 103.02178 * 35.65213 * 5 4 2 9 9 N 1.47442 * 107.23295 * 337.71828 * 8 5 4 10 10 C 1.46905 * 111.00159 * 236.74106 * 9 8 5 11 11 C 1.52997 * 109.47150 * 290.84338 * 10 9 8 12 12 O 1.42898 * 109.47319 * 64.99949 * 11 10 9 13 13 C 1.42902 * 114.00186 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47205 * 179.97438 * 13 12 11 15 15 H 1.08008 * 120.00105 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00129 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99722 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00218 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47224 * 59.99769 * 18 16 14 20 20 H 1.48500 * 109.47098 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47074 * 299.99700 * 18 16 14 22 22 H 1.08998 * 109.47140 * 297.74804 * 1 2 3 23 23 H 1.08996 * 109.47075 * 57.74660 * 1 2 3 24 24 H 1.09005 * 109.46893 * 177.75060 * 1 2 3 25 25 H 1.09006 * 110.98980 * 322.19412 * 4 2 1 26 26 H 1.08997 * 110.99510 * 86.00586 * 4 2 1 27 27 H 1.08994 * 109.47706 * 59.99608 * 7 5 4 28 28 H 1.09000 * 109.46813 * 180.02562 * 7 5 4 29 29 H 1.09003 * 109.46432 * 299.99482 * 7 5 4 30 30 H 1.08999 * 109.89263 * 218.30896 * 8 5 4 31 31 H 1.09000 * 109.89296 * 97.12455 * 8 5 4 32 32 H 1.09001 * 109.47063 * 170.83734 * 10 9 8 33 33 H 1.09004 * 109.46681 * 50.84359 * 10 9 8 34 34 H 1.09002 * 109.47153 * 304.99641 * 11 10 9 35 35 H 1.09001 * 109.46832 * 184.99832 * 11 10 9 36 36 H 1.09001 * 109.46918 * 299.99649 * 13 12 11 37 37 H 1.08999 * 109.46857 * 59.99535 * 13 12 11 38 38 H 0.96998 * 119.99585 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0693 -0.7775 -1.2264 5 6 3.4786 -1.2002 -0.7345 6 1 4.1948 -0.3907 -0.8753 7 6 3.9465 -2.4655 -1.4564 8 6 3.2536 -1.4799 0.7663 9 7 2.0447 -0.7397 1.1721 10 6 2.3357 0.1741 2.2850 11 6 2.6245 -0.6378 3.5493 12 8 3.8190 -1.3998 3.3636 13 6 4.1801 -2.1988 4.4920 14 6 5.4469 -2.9557 4.1868 15 1 5.9280 -2.8387 3.2269 16 6 5.9912 -3.7985 5.1325 17 7 5.4052 -3.9413 6.3012 18 14 7.5612 -4.7373 4.7540 19 1 8.6539 -3.7760 4.4586 20 1 7.9364 -5.5675 5.9267 21 1 7.3416 -5.6144 3.5760 22 1 -0.3633 0.4785 0.9095 23 1 -0.3633 0.5484 -0.8691 24 1 -0.3633 -1.0269 -0.0403 25 1 1.4515 -1.6503 -1.4380 26 1 2.1389 -0.1293 -2.1000 27 1 3.9899 -2.2770 -2.5290 28 1 4.9367 -2.7444 -1.0958 29 1 3.2462 -3.2769 -1.2580 30 1 4.1118 -1.1321 1.3411 31 1 3.1056 -2.5479 0.9264 32 1 1.4762 0.8218 2.4575 33 1 3.2054 0.7827 2.0374 34 1 1.7907 -1.3115 3.7468 35 1 2.7528 0.0389 4.3941 36 1 4.3406 -1.5548 5.3567 37 1 3.3785 -2.9049 4.7086 38 1 5.7884 -4.5339 6.9667 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385395914.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:18 Heat of formation + Delta-G solvation = -79.858199 kcal Electronic energy + Delta-G solvation = -16399.304699 eV Core-core repulsion = 13854.272581 eV Total energy + Delta-G solvation = -2545.032118 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.43101 -38.38464 -35.10508 -34.34833 -32.82267 -30.13186 -28.82371 -27.42761 -25.91062 -24.44934 -22.89005 -21.36317 -20.63510 -18.59378 -17.79810 -17.19391 -16.70661 -16.19521 -15.60756 -15.37061 -15.00409 -14.52557 -14.26448 -14.02093 -13.82507 -13.50201 -13.15816 -13.06586 -12.85190 -12.80849 -12.66026 -12.38422 -12.24090 -11.97147 -11.75182 -11.55886 -11.53547 -11.31817 -11.08508 -10.84912 -10.20173 -9.20497 -8.32120 -6.44424 1.38410 1.43307 1.51646 2.33765 3.01593 3.02640 3.20077 3.68239 3.75320 4.00943 4.21455 4.28975 4.37292 4.51490 4.51828 4.56205 4.69505 4.73066 4.77104 4.84137 4.84820 4.93061 5.03173 5.05979 5.10743 5.15781 5.19015 5.27713 5.39647 5.47090 5.50762 5.54109 5.96482 6.13792 6.28288 6.54041 6.82481 7.27432 8.80242 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031535 B = 0.006513 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.678825 B = 4297.923973 C = 5013.803321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.060 3.940 3 H 0.058 0.942 4 C -0.110 4.110 5 C -0.115 4.115 6 H 0.073 0.927 7 C -0.135 4.135 8 C 0.057 3.943 9 N -0.538 5.538 10 C 0.066 3.934 11 C 0.056 3.944 12 O -0.397 6.397 13 C 0.210 3.790 14 C -0.544 4.544 15 H 0.061 0.939 16 C 0.006 3.994 17 N -0.932 5.932 18 Si 0.982 3.018 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.266 1.266 22 H 0.052 0.948 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.107 0.893 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.047 0.953 36 H -0.017 1.017 37 H -0.021 1.021 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.102 7.886 -14.731 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.047 4.047 3 H 0.076 0.924 4 C -0.148 4.148 5 C -0.135 4.135 6 H 0.092 0.908 7 C -0.193 4.193 8 C -0.070 4.070 9 N -0.263 5.263 10 C -0.062 4.062 11 C -0.021 4.021 12 O -0.317 6.317 13 C 0.135 3.865 14 C -0.581 4.581 15 H 0.079 0.921 16 C -0.192 4.192 17 N -0.571 5.571 18 Si 0.804 3.196 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.190 1.190 22 H 0.071 0.929 23 H 0.096 0.904 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.000 1.000 37 H -0.003 1.003 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.372 7.463 -14.535 17.924 hybrid contribution 1.146 -0.079 0.661 1.325 sum -6.226 7.384 -13.874 16.905 Atomic orbital electron populations 1.21660 0.92872 1.02004 1.01999 1.22713 0.96826 0.96006 0.89201 0.92394 1.22802 0.94516 1.00339 0.97136 1.22418 0.97928 0.98831 0.94289 0.90834 1.21682 1.00727 0.96325 1.00574 1.22776 0.91437 0.98152 0.94668 1.63462 1.29485 1.26021 1.07322 1.22245 1.00376 0.93406 0.90158 1.22548 0.87679 0.94185 0.97668 1.87855 1.42638 1.60903 1.40316 1.19767 0.94269 0.88353 0.84071 1.21316 1.09165 1.26146 1.01503 0.92073 1.25961 1.01694 0.97300 0.94278 1.70074 1.41805 1.38622 1.06597 0.85260 0.77954 0.78283 0.78078 1.18957 1.19967 1.19033 0.92894 0.90416 0.93006 0.90671 0.88867 0.90627 0.93568 0.92982 0.93233 0.93550 0.87507 0.94586 0.94367 0.93486 0.99970 1.00278 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.59 71.98 0.69 -1.78 16 2 C 0.06 1.40 3.02 45.38 0.14 1.53 16 3 H 0.06 1.26 7.81 -2.39 -0.02 1.25 16 4 C -0.11 -2.33 5.94 31.98 0.19 -2.14 16 5 C -0.12 -3.02 3.54 -9.61 -0.03 -3.05 16 6 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 7 C -0.14 -3.26 9.16 71.98 0.66 -2.60 16 8 C 0.06 2.02 5.29 86.64 0.46 2.48 16 9 N -0.54 -16.92 4.82 -860.65 -4.15 -21.06 16 10 C 0.07 2.07 5.18 86.30 0.45 2.52 16 11 C 0.06 2.23 6.23 71.98 0.45 2.68 16 12 O -0.40 -19.83 7.36 -148.98 -1.10 -20.92 16 13 C 0.21 12.21 5.69 71.24 0.41 12.61 16 14 C -0.54 -32.98 9.43 25.60 0.24 -32.73 16 15 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 16 C 0.01 0.35 5.46 84.65 0.46 0.82 16 17 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 18 Si 0.98 45.04 29.54 68.60 2.03 47.06 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.05 1.10 8.13 -2.38 -0.02 1.08 16 25 H 0.07 1.60 7.95 -2.38 -0.02 1.58 16 26 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.30 8.06 -2.39 -0.02 1.28 16 30 H 0.05 2.06 5.73 -2.39 -0.01 2.04 16 31 H 0.05 1.87 7.77 -2.39 -0.02 1.85 16 32 H 0.11 2.65 8.08 -2.39 -0.02 2.64 16 33 H 0.04 1.14 7.98 -2.39 -0.02 1.12 16 34 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 36 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 37 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 38 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -66.91 303.89 2.16 -64.75 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 0.99 Total: 6.73 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 4.10 Total: -19.67 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -3.86 Total: -77.95 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -1.10 Total: -20.92 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -66.91 2.16 -64.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385395914.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.108 kcal (2) G-P(sol) polarization free energy of solvation -66.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds