Wall clock time and date at job start Sun Mar 29 2020 21:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47268 * 2 1 4 4 H 1.08994 * 109.47362 * 184.48230 * 3 2 1 5 5 C 1.50704 * 109.47363 * 64.48067 * 3 2 1 6 6 H 1.08005 * 119.99605 * 268.26831 * 5 3 2 7 7 C 1.37869 * 119.99944 * 87.99498 * 5 3 2 8 8 N 1.31519 * 120.00158 * 205.93179 * 7 5 3 9 9 Si 1.86800 * 120.00154 * 25.93031 * 7 5 3 10 10 H 1.48505 * 109.47089 * 95.76182 * 9 7 5 11 11 H 1.48494 * 109.47397 * 215.76186 * 9 7 5 12 12 H 1.48505 * 109.47229 * 335.76554 * 9 7 5 13 13 N 1.46905 * 109.46971 * 304.48193 * 3 2 1 14 14 C 1.48538 * 111.00106 * 84.25327 * 13 3 2 15 15 C 1.54931 * 103.22762 * 200.28112 * 14 13 3 16 16 C 1.54600 * 102.92300 * 37.41143 * 15 14 13 17 17 H 1.08999 * 110.30321 * 97.06073 * 16 15 14 18 18 C 1.52999 * 110.30867 * 219.12606 * 16 15 14 19 19 O 1.42902 * 109.47168 * 293.54818 * 18 16 15 20 20 C 1.47904 * 111.00010 * 326.85973 * 13 3 2 21 21 H 1.08996 * 109.91735 * 26.48615 * 20 13 3 22 22 C 1.52999 * 109.91282 * 265.19643 * 20 13 3 23 23 H 1.09002 * 109.47074 * 60.76622 * 1 2 3 24 24 H 1.09000 * 109.47579 * 180.76235 * 1 2 3 25 25 H 1.09007 * 109.47328 * 300.76771 * 1 2 3 26 26 H 1.08998 * 109.47259 * 239.99489 * 2 1 3 27 27 H 1.09001 * 109.46818 * 119.99375 * 2 1 3 28 28 H 0.96993 * 119.99817 * 179.97438 * 8 7 5 29 29 H 1.09001 * 110.66395 * 318.71452 * 14 13 3 30 30 H 1.08999 * 110.66475 * 81.84644 * 14 13 3 31 31 H 1.09000 * 110.72603 * 155.77058 * 15 14 13 32 32 H 1.09007 * 110.72323 * 279.05355 * 15 14 13 33 33 H 1.08996 * 109.47055 * 53.54883 * 18 16 15 34 34 H 1.09001 * 109.46729 * 173.54592 * 18 16 15 35 35 H 0.96701 * 113.99743 * 180.02562 * 19 18 16 36 36 H 1.08999 * 109.47731 * 61.45441 * 22 20 13 37 37 H 1.09004 * 109.46862 * 181.44843 * 22 20 13 38 38 H 1.08995 * 109.47360 * 301.44896 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1270 1.4435 -0.0803 5 6 1.6304 2.1202 1.2822 6 1 0.7008 2.6680 1.3303 7 6 2.4395 2.0361 2.3953 8 7 1.9182 2.1505 3.5974 9 14 4.2761 1.7595 2.1963 10 1 4.9810 3.0658 2.2400 11 1 4.7687 0.8942 3.2980 12 1 4.5388 1.0987 0.8926 13 7 1.4639 2.1655 -1.1417 14 6 0.1146 2.6920 -0.8124 15 6 -0.5237 2.9269 -2.2045 16 6 0.0038 1.7328 -3.0327 17 1 -0.7370 0.9337 -3.0584 18 6 0.3475 2.1830 -4.4540 19 8 -0.8490 2.5661 -5.1348 20 6 1.2737 1.2640 -2.2987 21 1 1.1455 0.2382 -1.9530 22 6 2.4805 1.3555 -3.2346 23 1 -0.3633 0.5019 -0.8968 24 1 -0.3634 -1.0275 0.0137 25 1 -0.3634 0.5257 0.8831 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5137 0.8901 28 1 2.4874 2.0910 4.3805 29 1 -0.4574 1.9570 -0.2461 30 1 0.1913 3.6292 -0.2612 31 1 -1.6114 2.9007 -2.1395 32 1 -0.1843 3.8714 -2.6300 33 1 1.0291 3.0324 -4.4112 34 1 0.8236 1.3618 -4.9900 35 1 -0.7063 2.8631 -6.0440 36 1 3.3776 1.0383 -2.7030 37 1 2.3213 0.7081 -4.0970 38 1 2.6024 2.3851 -3.5708 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385759007.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:23 Heat of formation + Delta-G solvation = -44.420733 kcal Electronic energy + Delta-G solvation = -17359.589299 eV Core-core repulsion = 14816.093864 eV Total energy + Delta-G solvation = -2543.495434 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.26820 -37.84469 -35.65605 -33.95792 -32.55006 -31.32819 -29.07811 -26.94532 -25.51773 -24.90673 -22.08268 -21.42082 -19.47897 -18.59763 -18.40757 -17.35064 -16.40389 -16.09951 -15.75968 -15.32254 -15.18231 -14.50652 -14.39650 -13.91508 -13.61250 -13.17732 -12.98170 -12.90260 -12.79411 -12.63753 -12.42614 -12.09546 -12.02310 -11.94399 -11.55328 -11.43141 -11.26701 -11.07166 -10.92921 -10.62909 -10.28539 -8.83724 -8.30281 -6.18791 1.33303 1.39908 1.47813 2.38283 3.00014 3.36935 3.45828 3.83022 3.90487 4.27684 4.32689 4.38963 4.46548 4.53873 4.54373 4.60727 4.64822 4.75750 4.86766 4.93936 4.98859 5.00720 5.06788 5.18020 5.22968 5.32062 5.35807 5.39704 5.47320 5.54060 5.56667 5.69204 6.15227 6.45496 6.72380 6.85206 7.01508 7.40163 8.84763 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039190 B = 0.008520 C = 0.008088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.301472 B = 3285.444305 C = 3460.983378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.143 4.143 3 C 0.171 3.829 4 H 0.040 0.960 5 C -0.517 4.517 6 H 0.050 0.950 7 C 0.026 3.974 8 N -0.928 5.928 9 Si 0.920 3.080 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.241 1.241 13 N -0.511 5.511 14 C 0.035 3.965 15 C -0.107 4.107 16 C -0.090 4.090 17 H 0.075 0.925 18 C 0.091 3.909 19 O -0.593 6.593 20 C 0.037 3.963 21 H 0.075 0.925 22 C -0.135 4.135 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.036 0.964 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.264 0.736 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.395 0.605 36 H 0.040 0.960 37 H 0.080 0.920 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.097 -2.907 -16.866 17.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.182 4.182 3 C 0.062 3.938 4 H 0.058 0.942 5 C -0.555 4.555 6 H 0.068 0.932 7 C -0.173 4.173 8 N -0.567 5.567 9 Si 0.745 3.255 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.165 1.165 13 N -0.235 5.235 14 C -0.093 4.093 15 C -0.145 4.145 16 C -0.109 4.109 17 H 0.093 0.907 18 C 0.014 3.986 19 O -0.401 6.401 20 C -0.071 4.071 21 H 0.093 0.907 22 C -0.192 4.192 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.244 0.756 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.951 -2.642 -16.229 16.470 hybrid contribution 0.555 -0.302 0.696 0.940 sum -0.395 -2.944 -15.533 15.814 Atomic orbital electron populations 1.21990 0.96041 1.00523 1.01482 1.22223 0.96869 0.99660 0.99488 1.19870 0.95495 0.89685 0.88717 0.94234 1.21256 1.06626 1.33385 0.94225 0.93152 1.25668 1.02466 0.94627 0.94542 1.70201 1.36865 1.50938 0.98664 0.86063 0.82303 0.78345 0.78761 1.20477 1.21495 1.16522 1.64969 1.20889 1.32282 1.05330 1.23365 0.90174 0.99400 0.96352 1.22464 0.99436 0.98305 0.94279 1.21949 0.96730 0.97836 0.94374 0.90674 1.22346 0.86033 0.98873 0.91356 1.86429 1.33568 1.88324 1.31827 1.22874 0.94960 0.97339 0.91955 0.90742 1.21845 0.96552 1.02338 0.98506 0.91188 0.92852 0.94463 0.91560 0.94415 0.92720 0.92520 0.93557 0.91343 0.91545 0.93034 0.91551 0.75566 0.94038 0.90109 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.52 7.64 71.98 0.55 -4.97 16 2 C -0.14 -5.88 5.06 30.59 0.15 -5.73 16 3 C 0.17 7.88 2.72 44.17 0.12 8.00 16 4 H 0.04 1.91 4.95 -2.39 -0.01 1.90 16 5 C -0.52 -28.63 7.12 25.60 0.18 -28.45 16 6 H 0.05 3.05 5.83 -2.91 -0.02 3.04 16 7 C 0.03 1.51 5.45 84.65 0.46 1.97 16 8 N -0.93 -56.90 13.96 21.45 0.30 -56.60 16 9 Si 0.92 43.94 27.94 68.60 1.92 45.86 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 12 H -0.24 -10.73 5.84 99.48 0.58 -10.15 16 13 N -0.51 -20.67 5.11 -837.45 -4.28 -24.96 16 14 C 0.03 1.40 4.26 86.65 0.37 1.77 16 15 C -0.11 -3.42 6.44 31.80 0.20 -3.21 16 16 C -0.09 -2.52 2.63 -9.92 -0.03 -2.55 16 17 H 0.07 2.08 7.93 -2.39 -0.02 2.07 16 18 C 0.09 2.00 5.14 71.98 0.37 2.37 16 19 O -0.59 -12.71 13.49 -148.98 -2.01 -14.72 16 20 C 0.04 1.17 2.06 45.06 0.09 1.26 16 21 H 0.08 2.40 3.68 -2.39 -0.01 2.39 16 22 C -0.13 -3.55 8.35 71.98 0.60 -2.95 16 23 H 0.07 2.48 3.51 -2.39 -0.01 2.47 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.04 1.67 6.66 -2.38 -0.02 1.66 16 26 H 0.07 2.35 6.21 -2.39 -0.01 2.33 16 27 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.06 2.41 3.77 -2.39 -0.01 2.40 16 30 H 0.05 2.10 7.37 -2.39 -0.02 2.08 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.07 2.10 7.81 -2.38 -0.02 2.08 16 33 H 0.05 1.14 6.83 -2.39 -0.02 1.13 16 34 H 0.07 1.18 6.62 -2.39 -0.02 1.17 16 35 H 0.39 4.46 9.12 -74.06 -0.68 3.79 16 36 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.60 6.80 -2.38 -0.02 1.58 16 38 H 0.06 1.60 6.72 -2.39 -0.02 1.58 16 Total: -1.00 -65.03 272.13 -0.73 -65.76 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.27 Total: 17.15 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: 3.08 Total: -32.49 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -3.98 Total: -81.56 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -2.01 Total: -14.72 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.92 Total: 45.86 kcal Total: -65.03 -0.73 -65.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385759007.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.343 kcal (2) G-P(sol) polarization free energy of solvation -65.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds