Wall clock time and date at job start Sun Mar 29 2020 22:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00147 * 2 1 4 4 H 1.08992 * 112.84823 * 21.69673 * 3 2 1 5 5 C 1.53786 * 113.61327 * 250.49286 * 3 2 1 6 6 H 1.08995 * 113.61680 * 334.57134 * 5 3 2 7 7 C 1.53000 * 113.60750 * 105.47099 * 5 3 2 8 8 C 1.53783 * 87.07753 * 220.01916 * 5 3 2 9 9 H 1.09004 * 113.61132 * 140.06789 * 8 5 3 10 10 N 1.46898 * 113.61497 * 270.88349 * 8 5 3 11 11 C 1.46904 * 111.00202 * 255.49993 * 10 8 5 12 12 C 1.50697 * 109.46891 * 180.02562 * 11 10 8 13 13 H 1.07991 * 120.00449 * 359.72239 * 12 11 10 14 14 C 1.37885 * 119.99686 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 11 17 17 H 1.48498 * 109.47416 * 59.99812 * 16 14 12 18 18 H 1.48508 * 109.46609 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46903 * 299.99397 * 16 14 12 20 20 C 1.53779 * 87.08334 * 25.43492 * 8 5 3 21 21 C 1.53005 * 113.61480 * 89.11434 * 20 8 5 22 22 C 1.52994 * 113.61363 * 220.01347 * 20 8 5 23 23 H 1.09000 * 109.47197 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46832 * 300.00122 * 1 2 3 25 25 H 1.09003 * 109.46976 * 60.00006 * 1 2 3 26 26 H 1.09000 * 109.46669 * 157.49422 * 7 5 3 27 27 H 1.08995 * 109.47304 * 277.49394 * 7 5 3 28 28 H 1.08999 * 109.47541 * 37.50080 * 7 5 3 29 29 H 1.00899 * 111.00328 * 19.45646 * 10 8 5 30 30 H 1.08998 * 109.47046 * 59.99771 * 11 10 8 31 31 H 1.09001 * 109.47014 * 299.99971 * 11 10 8 32 32 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 33 33 H 1.08999 * 109.47134 * 59.99794 * 21 20 8 34 34 H 1.08996 * 109.47242 * 179.97438 * 21 20 8 35 35 H 1.09001 * 109.46651 * 300.00080 * 21 20 8 36 36 H 1.09005 * 109.47241 * 60.00273 * 22 20 8 37 37 H 1.09002 * 109.47316 * 179.97438 * 22 20 8 38 38 H 1.09004 * 109.47632 * 300.00054 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3298 2.0717 0.3713 5 6 2.6906 1.6768 -1.3282 6 1 3.0271 0.8138 -1.9027 7 6 1.8919 2.6762 -2.1674 8 6 3.8010 2.3277 -0.4866 9 1 4.8033 2.1585 -0.8803 10 7 3.5452 3.7380 -0.1646 11 6 4.3772 4.6254 -0.9883 12 6 4.0882 6.0603 -0.6301 13 1 3.3563 6.2903 0.1299 14 6 4.7539 7.0799 -1.2771 15 7 5.6449 6.7998 -2.2029 16 14 4.3901 8.8588 -0.8384 17 1 4.6935 9.0867 0.5973 18 1 5.2312 9.7558 -1.6711 19 1 2.9560 9.1482 -1.0934 20 6 3.4077 1.3575 0.6398 21 6 4.1553 0.0236 0.5886 22 6 3.4217 1.9950 2.0305 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 2.5627 3.1904 -2.8557 27 1 1.1270 2.1454 -2.7340 28 1 1.4173 3.4050 -1.5103 29 1 2.5666 3.9608 -0.2681 30 1 4.1511 4.4609 -2.0418 31 1 5.4299 4.4103 -0.8047 32 1 6.1135 7.5171 -2.6578 33 1 5.2268 0.2041 0.6742 34 1 3.8268 -0.6090 1.4132 35 1 3.9452 -0.4745 -0.3579 36 1 2.7170 2.8262 2.0563 37 1 3.1336 1.2517 2.7739 38 1 4.4241 2.3615 2.2522 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389300388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:27 Heat of formation + Delta-G solvation = -35.235280 kcal Electronic energy + Delta-G solvation = -16739.694332 eV Core-core repulsion = 14196.597209 eV Total energy + Delta-G solvation = -2543.097123 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.26480 -36.53235 -33.86044 -32.15978 -31.12494 -27.33419 -27.13950 -26.74527 -25.62554 -23.21754 -21.65277 -20.18700 -18.03678 -16.64629 -16.15341 -15.29715 -15.07674 -14.58407 -14.32452 -13.93451 -13.51069 -13.23717 -12.76435 -12.37763 -12.17317 -11.98214 -11.90221 -11.69436 -11.49138 -11.31503 -11.02512 -10.85445 -10.84038 -10.79346 -10.44559 -10.01151 -9.93802 -9.63591 -9.12916 -8.96828 -8.47675 -7.23125 -6.03073 -4.04997 3.32939 3.37113 3.39972 3.98258 4.42104 4.75760 4.83372 4.99143 5.11186 5.32423 5.35131 5.41819 5.54013 5.63063 5.63999 5.68075 5.80461 5.86999 6.06095 6.08115 6.14067 6.19739 6.27034 6.37906 6.43044 6.51294 6.66002 6.80879 6.86217 7.28076 7.43278 7.46853 7.78844 8.14240 8.40302 8.61890 9.04000 9.59759 11.07843 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038115 B = 0.006447 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.437345 B = 4342.381275 C = 4498.085959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.075 3.925 4 H 0.084 0.916 5 C -0.160 4.160 6 H 0.091 0.909 7 C -0.143 4.143 8 C 0.085 3.915 9 H 0.082 0.918 10 N -0.666 5.666 11 C 0.196 3.804 12 C -0.515 4.515 13 H 0.060 0.940 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.078 4.078 21 C -0.115 4.115 22 C -0.116 4.116 23 H 0.078 0.922 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.329 0.671 30 H -0.011 1.011 31 H 0.027 0.973 32 H 0.262 0.738 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.765 -11.911 3.503 14.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C 0.018 3.982 4 H 0.102 0.898 5 C -0.180 4.180 6 H 0.109 0.891 7 C -0.201 4.201 8 C -0.027 4.027 9 H 0.100 0.900 10 N -0.296 5.296 11 C 0.070 3.930 12 C -0.553 4.553 13 H 0.078 0.922 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.079 4.079 21 C -0.172 4.172 22 C -0.173 4.173 23 H 0.097 0.903 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.148 0.852 30 H 0.007 0.993 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.080 -11.938 3.911 14.420 hybrid contribution -0.820 1.163 -0.807 1.636 sum -7.900 -10.775 3.104 13.717 Atomic orbital electron populations 1.22708 0.82195 1.01969 0.99711 1.87907 1.18712 1.28275 1.94602 1.24100 0.93640 0.84142 0.96333 0.89814 1.23779 0.98763 0.99430 0.96073 0.89070 1.21697 0.99814 0.98529 1.00040 1.22565 0.97442 0.89880 0.92854 0.89994 1.60537 1.10850 0.99668 1.58571 1.19580 0.92837 0.90584 0.89993 1.21138 1.22944 0.90555 1.20701 0.92152 1.24972 0.95156 0.99301 0.95033 1.69953 1.25933 1.32629 1.25143 0.86567 0.78125 0.84292 0.78433 1.20168 1.21357 1.20345 1.22268 0.93628 0.95746 0.96281 1.21364 0.98995 0.95058 1.01808 1.21450 1.02781 0.99245 0.93835 0.90315 0.94382 0.94372 0.91715 0.93355 0.92451 0.85175 0.99313 0.95467 0.92877 0.92808 0.92708 0.92524 0.92029 0.94357 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.86 101.05 1.10 1.44 16 2 O -0.38 -5.36 9.80 -35.23 -0.35 -5.71 16 3 C 0.08 1.12 3.00 -25.92 -0.08 1.04 16 4 H 0.08 1.24 7.41 -51.93 -0.38 0.86 16 5 C -0.16 -2.52 3.78 -89.80 -0.34 -2.86 16 6 H 0.09 1.41 7.65 -51.93 -0.40 1.02 16 7 C -0.14 -2.27 9.00 37.16 0.33 -1.94 16 8 C 0.08 1.52 3.57 -66.90 -0.24 1.28 16 9 H 0.08 1.56 7.85 -51.93 -0.41 1.15 16 10 N -0.67 -13.86 5.14 -107.13 -0.55 -14.41 16 11 C 0.20 5.05 5.26 -4.98 -0.03 5.02 16 12 C -0.51 -14.39 9.32 -34.44 -0.32 -14.71 16 13 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 16 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 C -0.08 -1.21 1.35 -153.70 -0.21 -1.41 16 21 C -0.11 -1.60 8.46 37.16 0.31 -1.28 16 22 C -0.12 -1.78 8.61 37.15 0.32 -1.46 16 23 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 1.15 7.36 -51.93 -0.38 0.77 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.92 6.31 -51.93 -0.33 0.59 16 29 H 0.33 6.60 6.03 -39.29 -0.24 6.36 16 30 H -0.01 -0.30 7.34 -51.93 -0.38 -0.68 16 31 H 0.03 0.76 8.13 -51.93 -0.42 0.34 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.78 7.18 -51.93 -0.37 0.41 16 36 H 0.06 0.99 7.57 -51.93 -0.39 0.59 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 301.83 15.07 4.55 4.55 Total: -1.00 -29.13 301.83 -6.51 -35.64 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.63 Total: 2.65 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 0.76 Total: -13.37 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.19 Total: -40.35 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.35 Total: -5.71 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.13 -6.51 -35.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389300388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.405 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds