Wall clock time and date at job start Sun Mar 29 2020 22:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00147 * 2 1 4 4 H 1.08992 * 112.84823 * 21.69673 * 3 2 1 5 5 C 1.53786 * 113.61327 * 250.49286 * 3 2 1 6 6 H 1.08995 * 113.61680 * 334.57134 * 5 3 2 7 7 C 1.53000 * 113.60750 * 105.47099 * 5 3 2 8 8 C 1.53783 * 87.07753 * 220.01916 * 5 3 2 9 9 H 1.09004 * 113.61132 * 140.06789 * 8 5 3 10 10 N 1.46898 * 113.61497 * 270.88349 * 8 5 3 11 11 C 1.46904 * 111.00202 * 255.49993 * 10 8 5 12 12 C 1.50697 * 109.46891 * 180.02562 * 11 10 8 13 13 H 1.07991 * 120.00449 * 359.72239 * 12 11 10 14 14 C 1.37885 * 119.99686 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 11 17 17 H 1.48498 * 109.47416 * 59.99812 * 16 14 12 18 18 H 1.48508 * 109.46609 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46903 * 299.99397 * 16 14 12 20 20 C 1.53779 * 87.08334 * 25.43492 * 8 5 3 21 21 C 1.53005 * 113.61480 * 89.11434 * 20 8 5 22 22 C 1.52994 * 113.61363 * 220.01347 * 20 8 5 23 23 H 1.09000 * 109.47197 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46832 * 300.00122 * 1 2 3 25 25 H 1.09003 * 109.46976 * 60.00006 * 1 2 3 26 26 H 1.09000 * 109.46669 * 157.49422 * 7 5 3 27 27 H 1.08995 * 109.47304 * 277.49394 * 7 5 3 28 28 H 1.08999 * 109.47541 * 37.50080 * 7 5 3 29 29 H 1.00899 * 111.00328 * 19.45646 * 10 8 5 30 30 H 1.08998 * 109.47046 * 59.99771 * 11 10 8 31 31 H 1.09001 * 109.47014 * 299.99971 * 11 10 8 32 32 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 33 33 H 1.08999 * 109.47134 * 59.99794 * 21 20 8 34 34 H 1.08996 * 109.47242 * 179.97438 * 21 20 8 35 35 H 1.09001 * 109.46651 * 300.00080 * 21 20 8 36 36 H 1.09005 * 109.47241 * 60.00273 * 22 20 8 37 37 H 1.09002 * 109.47316 * 179.97438 * 22 20 8 38 38 H 1.09004 * 109.47632 * 300.00054 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3298 2.0717 0.3713 5 6 2.6906 1.6768 -1.3282 6 1 3.0271 0.8138 -1.9027 7 6 1.8919 2.6762 -2.1674 8 6 3.8010 2.3277 -0.4866 9 1 4.8033 2.1585 -0.8803 10 7 3.5452 3.7380 -0.1646 11 6 4.3772 4.6254 -0.9883 12 6 4.0882 6.0603 -0.6301 13 1 3.3563 6.2903 0.1299 14 6 4.7539 7.0799 -1.2771 15 7 5.6449 6.7998 -2.2029 16 14 4.3901 8.8588 -0.8384 17 1 4.6935 9.0867 0.5973 18 1 5.2312 9.7558 -1.6711 19 1 2.9560 9.1482 -1.0934 20 6 3.4077 1.3575 0.6398 21 6 4.1553 0.0236 0.5886 22 6 3.4217 1.9950 2.0305 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 2.5627 3.1904 -2.8557 27 1 1.1270 2.1454 -2.7340 28 1 1.4173 3.4050 -1.5103 29 1 2.5666 3.9608 -0.2681 30 1 4.1511 4.4609 -2.0418 31 1 5.4299 4.4103 -0.8047 32 1 6.1135 7.5171 -2.6578 33 1 5.2268 0.2041 0.6742 34 1 3.8268 -0.6090 1.4132 35 1 3.9452 -0.4745 -0.3579 36 1 2.7170 2.8262 2.0563 37 1 3.1336 1.2517 2.7739 38 1 4.4241 2.3615 2.2522 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389300388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:27 Heat of formation + Delta-G solvation = -53.670799 kcal Electronic energy + Delta-G solvation = -16740.493756 eV Core-core repulsion = 14196.597209 eV Total energy + Delta-G solvation = -2543.896547 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.57606 -37.70972 -35.72447 -33.92023 -32.65023 -28.81882 -28.48557 -27.96675 -27.03690 -24.64527 -23.60028 -21.50783 -19.49541 -18.25819 -17.76647 -16.65862 -16.45024 -16.12955 -15.86502 -15.27154 -14.91243 -14.54410 -14.21689 -13.94609 -13.73043 -13.44282 -13.33008 -13.10357 -12.88045 -12.71110 -12.67657 -12.48935 -12.21232 -12.07058 -11.99029 -11.70816 -11.43429 -11.15881 -10.90346 -10.63034 -10.14505 -8.98305 -8.20771 -6.31603 1.41441 1.44699 1.52584 2.40527 2.91891 3.12673 3.38143 3.51960 3.66468 3.86027 4.06596 4.37902 4.41947 4.46886 4.52166 4.60117 4.66701 4.69638 4.84037 4.87098 4.89781 4.94775 5.06016 5.08350 5.13423 5.21248 5.25661 5.34917 5.36366 5.56945 5.59875 5.66510 6.05188 6.36325 6.49578 6.75698 6.92396 7.39210 8.90457 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038115 B = 0.006447 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.437345 B = 4342.381275 C = 4498.085959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.386 6.386 3 C 0.090 3.910 4 H 0.087 0.913 5 C -0.153 4.153 6 H 0.097 0.903 7 C -0.138 4.138 8 C 0.069 3.931 9 H 0.061 0.939 10 N -0.659 5.659 11 C 0.215 3.785 12 C -0.534 4.534 13 H 0.064 0.936 14 C 0.003 3.997 15 N -0.934 5.934 16 Si 0.970 3.030 17 H -0.269 1.269 18 H -0.284 1.284 19 H -0.266 1.266 20 C -0.073 4.073 21 C -0.110 4.110 22 C -0.112 4.112 23 H 0.099 0.901 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.335 0.665 30 H -0.035 1.035 31 H -0.006 1.006 32 H 0.264 0.736 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.403 -12.338 4.446 16.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.305 6.305 3 C 0.032 3.968 4 H 0.105 0.895 5 C -0.174 4.174 6 H 0.115 0.885 7 C -0.196 4.196 8 C -0.043 4.043 9 H 0.080 0.920 10 N -0.290 5.290 11 C 0.087 3.913 12 C -0.572 4.572 13 H 0.082 0.918 14 C -0.196 4.196 15 N -0.574 5.574 16 Si 0.795 3.205 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.191 1.191 20 C -0.075 4.075 21 C -0.168 4.168 22 C -0.170 4.170 23 H 0.118 0.882 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.155 0.845 30 H -0.017 1.017 31 H 0.012 0.988 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.740 -12.392 4.865 15.926 hybrid contribution -0.323 1.206 -1.117 1.675 sum -9.063 -11.186 3.748 14.876 Atomic orbital electron populations 1.22944 0.80329 1.03642 1.00388 1.87884 1.20710 1.27346 1.94557 1.23827 0.93337 0.84816 0.94782 0.89532 1.23716 0.97872 0.99190 0.96620 0.88525 1.21638 0.99793 0.98497 0.99647 1.22644 0.97326 0.88771 0.95564 0.92025 1.60414 1.10486 1.00704 1.57361 1.19169 0.91744 0.91142 0.89224 1.21506 1.23109 0.91726 1.20847 0.91781 1.25918 0.94747 1.04172 0.94732 1.70090 1.26932 1.34174 1.26215 0.85423 0.78427 0.78325 0.78334 1.19388 1.20944 1.19101 1.22260 0.94309 0.95540 0.95350 1.21341 0.98836 0.94186 1.02420 1.21410 1.01706 0.99540 0.94319 0.88233 0.93474 0.93936 0.94457 0.90919 0.92751 0.84544 1.01736 0.98787 0.92710 0.92805 0.91280 0.92472 0.92878 0.92154 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.86 113.37 1.23 1.67 16 2 O -0.39 -9.92 9.80 -148.98 -1.46 -11.38 16 3 C 0.09 2.51 3.00 31.12 0.09 2.60 16 4 H 0.09 2.38 7.41 -2.39 -0.02 2.36 16 5 C -0.15 -4.74 3.78 -10.27 -0.04 -4.78 16 6 H 0.10 2.90 7.65 -2.39 -0.02 2.88 16 7 C -0.14 -4.32 9.00 71.98 0.65 -3.67 16 8 C 0.07 2.49 3.57 45.44 0.16 2.65 16 9 H 0.06 2.46 7.85 -2.38 -0.02 2.44 16 10 N -0.66 -28.00 5.14 -492.85 -2.53 -30.53 16 11 C 0.21 11.50 5.26 85.56 0.45 11.95 16 12 C -0.53 -30.31 9.32 25.60 0.24 -30.07 16 13 H 0.06 3.51 7.81 -2.92 -0.02 3.49 16 14 C 0.00 0.14 5.46 84.66 0.46 0.61 16 15 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 16 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 C -0.07 -2.19 1.35 -51.66 -0.07 -2.26 16 21 C -0.11 -2.89 8.46 71.98 0.61 -2.29 16 22 C -0.11 -3.32 8.61 71.98 0.62 -2.70 16 23 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.04 1.35 7.36 -2.39 -0.02 1.34 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 1.71 6.31 -2.39 -0.02 1.69 16 29 H 0.33 13.50 6.03 -89.69 -0.54 12.96 16 30 H -0.04 -2.01 7.34 -2.39 -0.02 -2.03 16 31 H -0.01 -0.36 8.13 -2.39 -0.02 -0.38 16 32 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.49 7.18 -2.39 -0.02 1.47 16 36 H 0.05 1.64 7.57 -2.38 -0.02 1.62 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -62.57 301.83 3.20 -59.37 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.47 Total: 18.93 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 4.41 Total: -26.29 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -2.25 Total: -86.93 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -1.46 Total: -11.38 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -62.57 3.20 -59.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389300388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.702 kcal (2) G-P(sol) polarization free energy of solvation -62.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds