Wall clock time and date at job start Sun Mar 29 2020 22:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 114.00086 * 2 1 4 4 H 1.08993 * 112.85143 * 18.80506 * 3 2 1 5 5 C 1.53787 * 113.61171 * 247.49764 * 3 2 1 6 6 H 1.08995 * 113.61197 * 25.43366 * 5 3 2 7 7 C 1.53005 * 113.61147 * 156.33684 * 5 3 2 8 8 C 1.53783 * 87.08017 * 270.88442 * 5 3 2 9 9 H 1.08999 * 113.61428 * 220.01956 * 8 5 3 10 10 N 1.46897 * 113.69030 * 89.13029 * 8 5 3 11 11 C 1.46902 * 111.00317 * 105.93223 * 10 8 5 12 12 C 1.50698 * 109.47380 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99797 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00192 * 179.97438 * 12 11 10 15 15 N 1.31525 * 119.99905 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 120.00330 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47512 * 60.00073 * 16 14 12 18 18 H 1.48500 * 109.47600 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47218 * 300.00124 * 16 14 12 20 20 C 1.53779 * 87.08353 * 334.57082 * 8 5 3 21 21 C 1.52993 * 113.61544 * 139.98144 * 20 8 5 22 22 C 1.53003 * 113.61400 * 270.88397 * 20 8 5 23 23 H 1.09000 * 109.47281 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46681 * 299.99731 * 1 2 3 25 25 H 1.08991 * 109.46857 * 59.99718 * 1 2 3 26 26 H 1.08996 * 109.46857 * 132.59514 * 7 5 3 27 27 H 1.08999 * 109.46730 * 252.59508 * 7 5 3 28 28 H 1.08999 * 109.46885 * 12.59552 * 7 5 3 29 29 H 1.00896 * 111.00233 * 229.88955 * 10 8 5 30 30 H 1.08997 * 109.47080 * 300.00425 * 11 10 8 31 31 H 1.09001 * 109.46974 * 59.99938 * 11 10 8 32 32 H 0.96994 * 119.99831 * 179.97438 * 15 14 12 33 33 H 1.09002 * 109.47178 * 59.99996 * 21 20 8 34 34 H 1.09006 * 109.47084 * 179.97438 * 21 20 8 35 35 H 1.08996 * 109.47445 * 299.99969 * 21 20 8 36 36 H 1.09004 * 109.46746 * 43.41807 * 22 20 8 37 37 H 1.08997 * 109.47225 * 163.41750 * 22 20 8 38 38 H 1.08998 * 109.46982 * 283.42026 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3139 2.0788 0.3238 5 6 2.7535 1.6488 -1.3018 6 1 2.3927 1.0962 -2.1693 7 6 2.8735 3.1520 -1.5608 8 6 4.0062 1.0329 -0.6566 9 1 4.9215 1.5872 -0.8639 10 7 4.1459 -0.4094 -0.8976 11 6 5.2030 -0.6789 -1.8814 12 6 5.3171 -2.1653 -2.1019 13 1 4.6688 -2.8421 -1.5652 14 6 6.2484 -2.6611 -2.9894 15 7 7.0375 -1.8368 -3.6434 16 14 6.3893 -4.5035 -3.2632 17 1 5.0960 -5.0292 -3.7695 18 1 7.4581 -4.7759 -4.2576 19 1 6.7264 -5.1703 -1.9799 20 6 3.3757 1.3717 0.7045 21 6 3.5742 0.2823 1.7601 22 6 3.7344 2.7686 1.2154 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 3.9005 3.3923 -1.8358 27 1 2.2040 3.4353 -2.3729 28 1 2.6016 3.6990 -0.6581 29 1 4.3189 -0.9050 -0.0360 30 1 4.9560 -0.1894 -2.8234 31 1 6.1523 -0.2932 -1.5095 32 1 7.6929 -2.1857 -4.2676 33 1 4.6403 0.1264 1.9253 34 1 3.1035 0.5909 2.6937 35 1 3.1207 -0.6463 1.4138 36 1 3.6640 3.4842 0.3962 37 1 3.0429 3.0543 2.0080 38 1 4.7521 2.7623 1.6059 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389300392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:31 Heat of formation + Delta-G solvation = -21.477942 kcal Electronic energy + Delta-G solvation = -16817.421139 eV Core-core repulsion = 14274.920579 eV Total energy + Delta-G solvation = -2542.500560 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.30345 -36.22610 -33.87996 -31.80677 -31.42509 -28.06553 -26.68899 -26.48718 -25.43234 -23.26910 -21.32745 -20.45926 -17.86726 -16.34659 -16.12378 -15.50433 -15.13347 -14.55302 -14.47655 -13.76682 -13.41602 -13.10753 -12.64971 -12.30421 -12.14342 -12.07632 -11.98222 -11.91195 -11.64418 -11.13569 -10.94242 -10.78345 -10.72577 -10.61629 -10.38355 -9.96037 -9.69723 -9.46490 -8.99445 -8.85453 -8.39118 -7.05423 -5.95057 -3.96038 3.38788 3.41904 3.45802 3.97116 4.49166 4.75777 4.88558 5.03733 5.20838 5.40403 5.40604 5.45416 5.53920 5.57318 5.64229 5.74072 5.81946 5.85897 5.93632 5.99082 6.03653 6.12141 6.21350 6.26629 6.34789 6.43831 6.74206 6.78659 6.89622 7.40451 7.55099 7.66205 7.90896 8.26247 8.58452 8.79109 9.14404 9.68358 11.16192 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030158 B = 0.007113 C = 0.006678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.234999 B = 3935.542016 C = 4191.741560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.340 6.340 3 C 0.089 3.911 4 H 0.059 0.941 5 C -0.132 4.132 6 H 0.087 0.913 7 C -0.136 4.136 8 C 0.089 3.911 9 H 0.045 0.955 10 N -0.662 5.662 11 C 0.196 3.804 12 C -0.509 4.509 13 H 0.061 0.939 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.098 4.098 21 C -0.136 4.136 22 C -0.140 4.140 23 H 0.082 0.918 24 H 0.032 0.968 25 H 0.036 0.964 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.334 0.666 30 H 0.025 0.975 31 H -0.017 1.017 32 H 0.260 0.740 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.053 9.182 8.830 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.257 6.257 3 C 0.031 3.969 4 H 0.077 0.923 5 C -0.152 4.152 6 H 0.105 0.895 7 C -0.193 4.193 8 C -0.022 4.022 9 H 0.063 0.937 10 N -0.294 5.294 11 C 0.069 3.931 12 C -0.548 4.548 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.726 3.274 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.099 4.099 21 C -0.193 4.193 22 C -0.197 4.197 23 H 0.101 0.899 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.154 0.846 30 H 0.043 0.957 31 H 0.000 1.000 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.283 8.960 8.227 15.928 hybrid contribution 0.760 -0.598 0.182 0.984 sum -9.524 8.362 8.409 15.210 Atomic orbital electron populations 1.22739 0.82543 1.02278 0.98994 1.88073 1.17816 1.25625 1.94165 1.23061 0.92966 0.84698 0.96201 0.92337 1.22979 0.98516 0.95137 0.98570 0.89470 1.21791 1.01988 0.94604 1.00951 1.22624 0.94978 0.91932 0.92683 0.93720 1.60430 1.50642 1.03460 1.14870 1.19569 0.86420 0.96408 0.90653 1.21175 1.17758 0.91976 1.23904 0.92040 1.24984 0.95701 0.98046 0.95910 1.69965 1.21978 1.34380 1.27655 0.86560 0.77589 0.85403 0.77815 1.20210 1.21423 1.20326 1.22351 0.96074 0.95879 0.95613 1.21558 1.01109 0.99607 0.97014 1.21889 1.01294 0.95290 1.01264 0.89939 0.94989 0.94564 0.92088 0.92941 0.91978 0.84623 0.95661 0.99951 0.92998 0.93043 0.93493 0.90219 0.90770 0.92825 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.85 101.05 1.10 1.49 16 2 O -0.34 -5.68 8.67 -35.23 -0.31 -5.99 16 3 C 0.09 1.35 3.36 -25.92 -0.09 1.27 16 4 H 0.06 0.77 7.68 -51.93 -0.40 0.37 16 5 C -0.13 -2.20 4.18 -89.80 -0.38 -2.58 16 6 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 7 C -0.14 -1.79 8.53 37.16 0.32 -1.47 16 8 C 0.09 1.69 3.33 -66.90 -0.22 1.46 16 9 H 0.04 0.90 7.63 -51.93 -0.40 0.50 16 10 N -0.66 -15.09 5.85 -107.13 -0.63 -15.71 16 11 C 0.20 5.39 5.29 -4.98 -0.03 5.36 16 12 C -0.51 -15.00 9.32 -34.44 -0.32 -15.32 16 13 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.64 13.29 55.43 0.74 -26.91 16 16 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.10 -1.49 1.35 -153.70 -0.21 -1.70 16 21 C -0.14 -2.05 7.77 37.15 0.29 -1.76 16 22 C -0.14 -1.72 8.82 37.16 0.33 -1.39 16 23 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.82 7.89 -51.93 -0.41 0.41 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.69 5.45 -51.93 -0.28 0.41 16 29 H 0.33 7.43 6.22 -39.29 -0.24 7.18 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H -0.02 -0.50 8.13 -51.93 -0.42 -0.92 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.35 6.00 -51.93 -0.31 1.03 16 36 H 0.07 0.85 4.32 -51.93 -0.22 0.63 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 297.75 15.07 4.49 4.49 Total: -1.00 -31.40 297.75 -6.50 -37.90 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.46 Total: 2.01 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 0.69 Total: -13.13 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.11 Total: -42.62 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.31 Total: -5.99 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.40 -6.50 -37.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389300392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.422 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds