Wall clock time and date at job start Sun Mar 29 2020 22:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 114.00086 * 2 1 4 4 H 1.08993 * 112.85143 * 18.80506 * 3 2 1 5 5 C 1.53787 * 113.61171 * 247.49764 * 3 2 1 6 6 H 1.08995 * 113.61197 * 25.43366 * 5 3 2 7 7 C 1.53005 * 113.61147 * 156.33684 * 5 3 2 8 8 C 1.53783 * 87.08017 * 270.88442 * 5 3 2 9 9 H 1.08999 * 113.61428 * 220.01956 * 8 5 3 10 10 N 1.46897 * 113.69030 * 89.13029 * 8 5 3 11 11 C 1.46902 * 111.00317 * 105.93223 * 10 8 5 12 12 C 1.50698 * 109.47380 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99797 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00192 * 179.97438 * 12 11 10 15 15 N 1.31525 * 119.99905 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 120.00330 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47512 * 60.00073 * 16 14 12 18 18 H 1.48500 * 109.47600 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47218 * 300.00124 * 16 14 12 20 20 C 1.53779 * 87.08353 * 334.57082 * 8 5 3 21 21 C 1.52993 * 113.61544 * 139.98144 * 20 8 5 22 22 C 1.53003 * 113.61400 * 270.88397 * 20 8 5 23 23 H 1.09000 * 109.47281 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46681 * 299.99731 * 1 2 3 25 25 H 1.08991 * 109.46857 * 59.99718 * 1 2 3 26 26 H 1.08996 * 109.46857 * 132.59514 * 7 5 3 27 27 H 1.08999 * 109.46730 * 252.59508 * 7 5 3 28 28 H 1.08999 * 109.46885 * 12.59552 * 7 5 3 29 29 H 1.00896 * 111.00233 * 229.88955 * 10 8 5 30 30 H 1.08997 * 109.47080 * 300.00425 * 11 10 8 31 31 H 1.09001 * 109.46974 * 59.99938 * 11 10 8 32 32 H 0.96994 * 119.99831 * 179.97438 * 15 14 12 33 33 H 1.09002 * 109.47178 * 59.99996 * 21 20 8 34 34 H 1.09006 * 109.47084 * 179.97438 * 21 20 8 35 35 H 1.08996 * 109.47445 * 299.99969 * 21 20 8 36 36 H 1.09004 * 109.46746 * 43.41807 * 22 20 8 37 37 H 1.08997 * 109.47225 * 163.41750 * 22 20 8 38 38 H 1.08998 * 109.46982 * 283.42026 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3139 2.0788 0.3238 5 6 2.7535 1.6488 -1.3018 6 1 2.3927 1.0962 -2.1693 7 6 2.8735 3.1520 -1.5608 8 6 4.0062 1.0329 -0.6566 9 1 4.9215 1.5872 -0.8639 10 7 4.1459 -0.4094 -0.8976 11 6 5.2030 -0.6789 -1.8814 12 6 5.3171 -2.1653 -2.1019 13 1 4.6688 -2.8421 -1.5652 14 6 6.2484 -2.6611 -2.9894 15 7 7.0375 -1.8368 -3.6434 16 14 6.3893 -4.5035 -3.2632 17 1 5.0960 -5.0292 -3.7695 18 1 7.4581 -4.7759 -4.2576 19 1 6.7264 -5.1703 -1.9799 20 6 3.3757 1.3717 0.7045 21 6 3.5742 0.2823 1.7601 22 6 3.7344 2.7686 1.2154 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 3.9005 3.3923 -1.8358 27 1 2.2040 3.4353 -2.3729 28 1 2.6016 3.6990 -0.6581 29 1 4.3189 -0.9050 -0.0360 30 1 4.9560 -0.1894 -2.8234 31 1 6.1523 -0.2932 -1.5095 32 1 7.6929 -2.1857 -4.2676 33 1 4.6403 0.1264 1.9253 34 1 3.1035 0.5909 2.6937 35 1 3.1207 -0.6463 1.4138 36 1 3.6640 3.4842 0.3962 37 1 3.0429 3.0543 2.0080 38 1 4.7521 2.7623 1.6059 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389300392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:30 Heat of formation + Delta-G solvation = -42.981763 kcal Electronic energy + Delta-G solvation = -16818.353615 eV Core-core repulsion = 14274.920579 eV Total energy + Delta-G solvation = -2543.433036 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.60027 -37.47815 -35.88443 -33.87671 -32.61973 -29.42134 -28.30658 -27.65896 -26.74183 -24.87201 -23.34073 -21.71451 -19.37248 -18.31605 -17.36566 -16.91067 -16.59601 -16.39240 -15.87501 -15.31549 -14.81316 -14.43119 -14.16044 -13.75673 -13.58834 -13.54421 -13.19050 -13.13537 -13.00875 -12.80183 -12.69005 -12.44894 -12.08022 -12.03964 -11.86504 -11.66320 -11.41188 -10.91447 -10.71682 -10.63686 -10.05955 -8.95153 -8.23164 -6.34727 1.38444 1.43058 1.51110 2.38985 2.87228 3.09166 3.37810 3.62378 3.75066 3.97942 4.16902 4.31672 4.41287 4.51895 4.61878 4.64861 4.69745 4.72247 4.83199 4.88450 4.90611 4.95822 5.01186 5.10681 5.14555 5.15475 5.25145 5.30376 5.44104 5.57970 5.63069 5.65312 6.05147 6.50084 6.59210 6.79905 6.93997 7.36373 8.88502 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030158 B = 0.007113 C = 0.006678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.234999 B = 3935.542016 C = 4191.741560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.374 6.374 3 C 0.097 3.903 4 H 0.093 0.907 5 C -0.133 4.133 6 H 0.049 0.951 7 C -0.130 4.130 8 C 0.064 3.936 9 H 0.025 0.975 10 N -0.660 5.660 11 C 0.215 3.785 12 C -0.535 4.535 13 H 0.061 0.939 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.975 3.025 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.265 1.265 20 C -0.087 4.087 21 C -0.133 4.133 22 C -0.137 4.137 23 H 0.086 0.914 24 H 0.057 0.943 25 H 0.040 0.960 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.334 0.666 30 H -0.009 1.009 31 H -0.046 1.046 32 H 0.265 0.735 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.416 9.560 10.238 18.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.292 6.292 3 C 0.038 3.962 4 H 0.111 0.889 5 C -0.153 4.153 6 H 0.068 0.932 7 C -0.187 4.187 8 C -0.047 4.047 9 H 0.043 0.957 10 N -0.292 5.292 11 C 0.088 3.912 12 C -0.573 4.573 13 H 0.079 0.921 14 C -0.198 4.198 15 N -0.575 5.575 16 Si 0.799 3.201 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.190 1.190 20 C -0.088 4.088 21 C -0.191 4.191 22 C -0.194 4.194 23 H 0.105 0.895 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.155 0.845 30 H 0.010 0.990 31 H -0.029 1.029 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.668 9.355 9.650 17.798 hybrid contribution 1.169 -0.683 -0.271 1.381 sum -10.498 8.672 9.380 16.535 Atomic orbital electron populations 1.22925 0.80564 1.03148 1.00408 1.88032 1.20185 1.26791 1.94239 1.23065 0.93463 0.85102 0.94533 0.88890 1.23045 0.97233 0.96955 0.98023 0.93199 1.21774 1.01932 0.92032 1.02937 1.22877 0.95415 0.89262 0.97147 0.95676 1.60335 1.48163 1.06519 1.14193 1.19157 0.86330 0.95430 0.90326 1.21500 1.18373 0.92814 1.24638 0.92074 1.25988 0.94912 1.03693 0.95174 1.70100 1.22447 1.36920 1.28040 0.85359 0.77947 0.78531 0.78281 1.19410 1.20470 1.19000 1.22376 0.95268 0.97739 0.93367 1.21516 1.00638 0.98760 0.98159 1.21905 1.02059 0.93068 1.02332 0.89542 0.92432 0.94124 0.92948 0.91704 0.88918 0.84534 0.99046 1.02869 0.92593 0.93869 0.90654 0.92385 0.89950 0.89917 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.85 113.37 1.23 1.83 16 2 O -0.37 -12.17 8.67 -148.98 -1.29 -13.46 16 3 C 0.10 2.75 3.36 31.12 0.10 2.86 16 4 H 0.09 2.03 7.68 -2.39 -0.02 2.01 16 5 C -0.13 -4.42 4.18 -10.26 -0.04 -4.47 16 6 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 7 C -0.13 -3.20 8.53 71.98 0.61 -2.59 16 8 C 0.06 2.48 3.33 45.44 0.15 2.63 16 9 H 0.03 1.07 7.63 -2.39 -0.02 1.05 16 10 N -0.66 -31.57 5.85 -492.86 -2.88 -34.45 16 11 C 0.22 12.55 5.29 85.56 0.45 13.01 16 12 C -0.54 -32.57 9.32 25.60 0.24 -32.33 16 13 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 14 C 0.00 0.02 5.46 84.65 0.46 0.48 16 15 N -0.93 -58.91 13.29 21.45 0.28 -58.62 16 16 Si 0.98 46.21 29.54 68.60 2.03 48.23 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 C -0.09 -2.51 1.35 -51.66 -0.07 -2.58 16 21 C -0.13 -3.88 7.77 71.98 0.56 -3.32 16 22 C -0.14 -2.91 8.82 71.98 0.63 -2.28 16 23 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 1.38 7.89 -2.39 -0.02 1.36 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 1.72 5.45 -2.39 -0.01 1.71 16 29 H 0.33 15.56 6.22 -89.70 -0.56 15.00 16 30 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 31 H -0.05 -2.89 8.13 -2.39 -0.02 -2.90 16 32 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 33 H 0.04 1.30 8.12 -2.39 -0.02 1.28 16 34 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.06 1.94 6.00 -2.39 -0.01 1.93 16 36 H 0.08 1.62 4.32 -2.38 -0.01 1.61 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -70.60 297.75 2.94 -67.66 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.46 Total: 17.40 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 4.33 Total: -26.76 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -2.60 Total: -93.07 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -1.29 Total: -13.46 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -70.60 2.94 -67.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389300392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.682 kcal (2) G-P(sol) polarization free energy of solvation -70.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds