Wall clock time and date at job start Sun Mar 29 2020 22:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00197 * 2 1 4 4 H 1.09011 * 112.90613 * 21.73988 * 3 2 1 5 5 C 1.53777 * 113.61525 * 250.49541 * 3 2 1 6 6 H 1.09005 * 113.61881 * 105.46647 * 5 3 2 7 7 C 1.53004 * 113.69116 * 334.57352 * 5 3 2 8 8 C 1.53776 * 87.08298 * 220.01662 * 5 3 2 9 9 H 1.09003 * 113.61936 * 140.06172 * 8 5 3 10 10 N 1.46900 * 113.61404 * 270.88397 * 8 5 3 11 11 C 1.46904 * 110.99939 * 255.49525 * 10 8 5 12 12 C 1.50709 * 109.47021 * 180.02562 * 11 10 8 13 13 H 1.07994 * 120.00123 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99585 * 180.27361 * 12 11 10 15 15 N 1.31510 * 119.99952 * 359.72136 * 14 12 11 16 16 Si 1.86799 * 119.99890 * 179.72087 * 14 12 11 17 17 H 1.48503 * 109.47089 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47273 * 119.99739 * 16 14 12 19 19 H 1.48497 * 109.47256 * 240.00306 * 16 14 12 20 20 C 1.53771 * 113.61982 * 152.99346 * 3 2 1 21 21 C 1.53005 * 113.61300 * 25.43340 * 20 3 2 22 22 C 1.53001 * 113.61950 * 254.53335 * 20 3 2 23 23 H 1.09005 * 109.47266 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47237 * 300.00082 * 1 2 3 25 25 H 1.09001 * 109.46755 * 60.00366 * 1 2 3 26 26 H 1.08995 * 109.46745 * 347.07610 * 7 5 3 27 27 H 1.09006 * 109.46665 * 107.06816 * 7 5 3 28 28 H 1.08999 * 109.47238 * 227.07160 * 7 5 3 29 29 H 1.00904 * 111.00395 * 19.44088 * 10 8 5 30 30 H 1.08998 * 109.47070 * 59.99922 * 11 10 8 31 31 H 1.08999 * 109.46601 * 299.99474 * 11 10 8 32 32 H 0.97005 * 119.99489 * 179.97438 * 15 14 12 33 33 H 1.08998 * 109.47301 * 174.34998 * 21 20 3 34 34 H 1.08997 * 109.47136 * 294.35160 * 21 20 3 35 35 H 1.09006 * 109.47011 * 54.35165 * 21 20 3 36 36 H 1.09004 * 109.46804 * 322.49778 * 22 20 3 37 37 H 1.08997 * 109.47113 * 82.49676 * 22 20 3 38 38 H 1.08994 * 109.47395 * 202.50067 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3308 2.0724 0.3719 5 6 2.6906 1.6768 -1.3281 6 1 2.1217 2.3888 -1.9261 7 6 3.1636 0.4666 -2.1361 8 6 3.8010 2.3277 -0.4867 9 1 4.8033 2.1585 -0.8803 10 7 3.5452 3.7380 -0.1647 11 6 4.3771 4.6254 -0.9884 12 6 4.0881 6.0605 -0.6302 13 1 3.3591 6.2903 0.1326 14 6 4.7500 7.0800 -1.2809 15 7 5.6375 6.8001 -2.2102 16 14 4.3862 8.8590 -0.8424 17 1 3.3558 8.9047 0.2260 18 1 5.6287 9.5142 -0.3608 19 1 3.8843 9.5724 -2.0442 20 6 3.4076 1.3576 0.6398 21 6 4.1553 0.0237 0.5887 22 6 3.4216 1.9952 2.0305 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 3.1313 -0.4241 -1.5087 27 1 2.5110 0.3277 -2.9981 28 1 4.1852 0.6342 -2.4770 29 1 2.5665 3.9609 -0.2684 30 1 4.1510 4.4608 -2.0420 31 1 5.4297 4.4103 -0.8047 32 1 6.1028 7.5175 -2.6681 33 1 5.1685 0.1604 0.9665 34 1 3.6337 -0.7090 1.2044 35 1 4.1964 -0.3306 -0.4414 36 1 2.7169 2.8264 2.0563 37 1 3.1339 1.2518 2.7739 38 1 4.4239 2.3617 2.2522 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389300853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:33 Heat of formation + Delta-G solvation = -28.427069 kcal Electronic energy + Delta-G solvation = -16689.393654 eV Core-core repulsion = 14146.591757 eV Total energy + Delta-G solvation = -2542.801897 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.38916 -36.49624 -33.91225 -31.89166 -31.22277 -27.98444 -27.03078 -26.39458 -25.62415 -23.17101 -21.46227 -20.54166 -18.06497 -16.31277 -16.24955 -15.61757 -15.25980 -14.65008 -14.46002 -13.65325 -13.57201 -13.02566 -12.65889 -12.30964 -12.16893 -12.08616 -11.93658 -11.71641 -11.67126 -11.32010 -11.02003 -10.92269 -10.83761 -10.55329 -10.41216 -10.01664 -9.85050 -9.64306 -9.12008 -8.97122 -8.48968 -7.25655 -6.03937 -4.05920 3.30234 3.37569 3.42340 3.96947 4.41757 4.76501 4.82590 4.96415 5.08766 5.30297 5.32618 5.41790 5.54386 5.57806 5.64409 5.71939 5.83505 5.91015 6.02016 6.08173 6.15766 6.21949 6.26219 6.29000 6.42341 6.63138 6.65861 6.80792 6.87039 7.25979 7.40518 7.44939 7.78526 8.12714 8.37634 8.60045 9.03616 9.59088 11.07155 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037797 B = 0.006144 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.617068 B = 4555.904778 C = 4595.499021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.074 3.926 4 H 0.084 0.916 5 C -0.162 4.162 6 H 0.070 0.930 7 C -0.130 4.130 8 C 0.085 3.915 9 H 0.083 0.917 10 N -0.666 5.666 11 C 0.195 3.805 12 C -0.514 4.514 13 H 0.062 0.938 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.898 3.102 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.074 4.074 21 C -0.132 4.132 22 C -0.117 4.117 23 H 0.079 0.921 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.328 0.672 30 H -0.013 1.013 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.320 -12.980 3.565 15.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C 0.016 3.984 4 H 0.102 0.898 5 C -0.182 4.182 6 H 0.089 0.911 7 C -0.187 4.187 8 C -0.027 4.027 9 H 0.101 0.899 10 N -0.294 5.294 11 C 0.069 3.931 12 C -0.552 4.552 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.075 4.075 21 C -0.189 4.189 22 C -0.174 4.174 23 H 0.097 0.903 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.145 0.855 30 H 0.005 0.995 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.634 -13.009 3.981 15.136 hybrid contribution -0.849 1.276 -0.811 1.734 sum -7.483 -11.733 3.170 14.272 Atomic orbital electron populations 1.22709 0.82243 1.01986 0.99688 1.87892 1.18618 1.28083 1.94491 1.23957 0.93718 0.84248 0.96456 0.89849 1.23679 0.99660 0.98594 0.96315 0.91108 1.21643 1.00307 0.97824 0.98945 1.22707 0.97411 0.89620 0.93012 0.89904 1.60526 1.10525 0.99811 1.58578 1.19585 0.92913 0.90711 0.89901 1.21218 1.23123 0.90485 1.20424 0.91969 1.24984 0.95154 0.99391 0.95028 1.69975 1.26268 1.32430 1.24992 0.86441 0.78176 0.84595 0.78189 1.19690 1.20976 1.21126 1.22251 0.93437 0.95716 0.96094 1.21721 0.98938 0.95313 1.02948 1.21453 1.02740 0.99215 0.93988 0.90288 0.94378 0.94424 0.90467 0.93561 0.92693 0.85508 0.99498 0.95342 0.92970 0.93025 0.92503 0.91074 0.92030 0.94371 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.86 101.05 1.10 1.43 16 2 O -0.37 -5.14 8.47 -35.23 -0.30 -5.43 16 3 C 0.07 1.09 3.40 -25.93 -0.09 1.00 16 4 H 0.08 1.22 7.59 -51.92 -0.39 0.83 16 5 C -0.16 -2.56 4.05 -89.81 -0.36 -2.93 16 6 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 7 C -0.13 -1.83 8.26 37.16 0.31 -1.53 16 8 C 0.08 1.52 3.33 -66.90 -0.22 1.30 16 9 H 0.08 1.59 7.64 -51.93 -0.40 1.19 16 10 N -0.67 -14.04 5.45 -107.13 -0.58 -14.63 16 11 C 0.20 5.10 5.30 -4.97 -0.03 5.07 16 12 C -0.51 -14.50 9.32 -34.44 -0.32 -14.83 16 13 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 16 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 C -0.07 -1.14 1.35 -153.70 -0.21 -1.34 16 21 C -0.13 -1.82 8.21 37.16 0.31 -1.52 16 22 C -0.12 -1.80 8.61 37.16 0.32 -1.48 16 23 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 1.05 4.70 -51.93 -0.24 0.81 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.78 7.90 -51.93 -0.41 0.36 16 29 H 0.33 6.65 8.06 -39.29 -0.32 6.33 16 30 H -0.01 -0.36 8.14 -51.93 -0.42 -0.78 16 31 H 0.03 0.80 8.13 -51.93 -0.42 0.38 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.75 8.03 -51.93 -0.42 0.33 16 35 H 0.07 0.95 4.33 -51.93 -0.22 0.73 16 36 H 0.06 0.99 7.57 -51.93 -0.39 0.60 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 299.53 15.07 4.51 4.51 Total: -1.00 -29.46 299.53 -6.52 -35.98 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.57 Total: 2.35 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 0.70 Total: -13.33 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.15 Total: -40.75 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.30 Total: -5.43 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.46 -6.52 -35.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389300853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.549 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds