Wall clock time and date at job start Sun Mar 29 2020 22:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00197 * 2 1 4 4 H 1.09011 * 112.90613 * 21.73988 * 3 2 1 5 5 C 1.53777 * 113.61525 * 250.49541 * 3 2 1 6 6 H 1.09005 * 113.61881 * 105.46647 * 5 3 2 7 7 C 1.53004 * 113.69116 * 334.57352 * 5 3 2 8 8 C 1.53776 * 87.08298 * 220.01662 * 5 3 2 9 9 H 1.09003 * 113.61936 * 140.06172 * 8 5 3 10 10 N 1.46900 * 113.61404 * 270.88397 * 8 5 3 11 11 C 1.46904 * 110.99939 * 255.49525 * 10 8 5 12 12 C 1.50709 * 109.47021 * 180.02562 * 11 10 8 13 13 H 1.07994 * 120.00123 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99585 * 180.27361 * 12 11 10 15 15 N 1.31510 * 119.99952 * 359.72136 * 14 12 11 16 16 Si 1.86799 * 119.99890 * 179.72087 * 14 12 11 17 17 H 1.48503 * 109.47089 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47273 * 119.99739 * 16 14 12 19 19 H 1.48497 * 109.47256 * 240.00306 * 16 14 12 20 20 C 1.53771 * 113.61982 * 152.99346 * 3 2 1 21 21 C 1.53005 * 113.61300 * 25.43340 * 20 3 2 22 22 C 1.53001 * 113.61950 * 254.53335 * 20 3 2 23 23 H 1.09005 * 109.47266 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47237 * 300.00082 * 1 2 3 25 25 H 1.09001 * 109.46755 * 60.00366 * 1 2 3 26 26 H 1.08995 * 109.46745 * 347.07610 * 7 5 3 27 27 H 1.09006 * 109.46665 * 107.06816 * 7 5 3 28 28 H 1.08999 * 109.47238 * 227.07160 * 7 5 3 29 29 H 1.00904 * 111.00395 * 19.44088 * 10 8 5 30 30 H 1.08998 * 109.47070 * 59.99922 * 11 10 8 31 31 H 1.08999 * 109.46601 * 299.99474 * 11 10 8 32 32 H 0.97005 * 119.99489 * 179.97438 * 15 14 12 33 33 H 1.08998 * 109.47301 * 174.34998 * 21 20 3 34 34 H 1.08997 * 109.47136 * 294.35160 * 21 20 3 35 35 H 1.09006 * 109.47011 * 54.35165 * 21 20 3 36 36 H 1.09004 * 109.46804 * 322.49778 * 22 20 3 37 37 H 1.08997 * 109.47113 * 82.49676 * 22 20 3 38 38 H 1.08994 * 109.47395 * 202.50067 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3308 2.0724 0.3719 5 6 2.6906 1.6768 -1.3281 6 1 2.1217 2.3888 -1.9261 7 6 3.1636 0.4666 -2.1361 8 6 3.8010 2.3277 -0.4867 9 1 4.8033 2.1585 -0.8803 10 7 3.5452 3.7380 -0.1647 11 6 4.3771 4.6254 -0.9884 12 6 4.0881 6.0605 -0.6302 13 1 3.3591 6.2903 0.1326 14 6 4.7500 7.0800 -1.2809 15 7 5.6375 6.8001 -2.2102 16 14 4.3862 8.8590 -0.8424 17 1 3.3558 8.9047 0.2260 18 1 5.6287 9.5142 -0.3608 19 1 3.8843 9.5724 -2.0442 20 6 3.4076 1.3576 0.6398 21 6 4.1553 0.0237 0.5887 22 6 3.4216 1.9952 2.0305 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 3.1313 -0.4241 -1.5087 27 1 2.5110 0.3277 -2.9981 28 1 4.1852 0.6342 -2.4770 29 1 2.5665 3.9609 -0.2684 30 1 4.1510 4.4608 -2.0420 31 1 5.4297 4.4103 -0.8047 32 1 6.1028 7.5175 -2.6681 33 1 5.1685 0.1604 0.9665 34 1 3.6337 -0.7090 1.2044 35 1 4.1964 -0.3306 -0.4414 36 1 2.7169 2.8264 2.0563 37 1 3.1339 1.2518 2.7739 38 1 4.4239 2.3617 2.2522 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389300853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:32 Heat of formation + Delta-G solvation = -47.365093 kcal Electronic energy + Delta-G solvation = -16690.214869 eV Core-core repulsion = 14146.591757 eV Total energy + Delta-G solvation = -2543.623111 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.68171 -37.66080 -35.81465 -33.84930 -32.47546 -29.46034 -28.24723 -27.75632 -26.98909 -24.68420 -23.42648 -21.78828 -19.51005 -18.28464 -17.43480 -16.89583 -16.56187 -16.37925 -15.91875 -15.28621 -14.86670 -14.32201 -14.18370 -13.86306 -13.57629 -13.35357 -13.29973 -13.23400 -12.89698 -12.84810 -12.73409 -12.49485 -12.13640 -12.10178 -11.83932 -11.69577 -11.35922 -11.04377 -10.89634 -10.66028 -10.14467 -9.02457 -8.23229 -6.34479 1.40515 1.41310 1.55027 2.39177 2.91091 3.10310 3.37969 3.53366 3.64082 3.81887 4.07563 4.35610 4.46703 4.52064 4.58279 4.59767 4.69043 4.76375 4.83870 4.89047 4.93435 4.96456 5.05906 5.09355 5.12701 5.24530 5.25946 5.34607 5.46649 5.58415 5.61083 5.66550 6.02056 6.35198 6.45100 6.71901 6.88703 7.36691 8.88640 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037797 B = 0.006144 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.617068 B = 4555.904778 C = 4595.499021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.379 6.379 3 C 0.088 3.912 4 H 0.085 0.915 5 C -0.159 4.159 6 H 0.057 0.943 7 C -0.125 4.125 8 C 0.069 3.931 9 H 0.063 0.937 10 N -0.661 5.661 11 C 0.213 3.787 12 C -0.534 4.534 13 H 0.065 0.935 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.973 3.027 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.278 1.278 20 C -0.068 4.068 21 C -0.129 4.129 22 C -0.113 4.113 23 H 0.101 0.899 24 H 0.046 0.954 25 H 0.039 0.961 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.333 0.667 30 H -0.041 1.041 31 H -0.003 1.003 32 H 0.265 0.735 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.705 -13.492 4.450 16.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.297 6.297 3 C 0.030 3.970 4 H 0.103 0.897 5 C -0.180 4.180 6 H 0.075 0.925 7 C -0.182 4.182 8 C -0.043 4.043 9 H 0.081 0.919 10 N -0.289 5.289 11 C 0.086 3.914 12 C -0.572 4.572 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.798 3.202 17 H -0.186 1.186 18 H -0.204 1.204 19 H -0.203 1.203 20 C -0.069 4.069 21 C -0.186 4.186 22 C -0.171 4.171 23 H 0.119 0.881 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.151 0.849 30 H -0.023 1.023 31 H 0.016 0.984 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.038 -13.551 4.877 16.493 hybrid contribution -0.432 1.358 -1.105 1.803 sum -8.470 -12.193 3.773 15.318 Atomic orbital electron populations 1.22935 0.80465 1.03672 1.00216 1.87865 1.20494 1.26956 1.94425 1.23690 0.93428 0.85010 0.94899 0.89728 1.23649 0.98586 0.98807 0.96924 0.92458 1.21615 1.00162 0.97224 0.99221 1.22797 0.97255 0.88406 0.95796 0.91877 1.60406 1.10115 1.00987 1.57367 1.19180 0.91964 0.91381 0.88914 1.21567 1.23358 0.91616 1.20646 0.91674 1.25953 0.94704 1.04360 0.94694 1.70105 1.27224 1.34129 1.26026 0.85276 0.78270 0.78425 0.78266 1.18593 1.20420 1.20341 1.22225 0.94097 0.95534 0.95032 1.21710 0.98936 0.94412 1.03498 1.21413 1.01615 0.99503 0.94549 0.88077 0.93546 0.94233 0.89417 0.92508 0.93211 0.84934 1.02309 0.98447 0.92639 0.92887 0.91194 0.90749 0.92944 0.92165 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.86 113.37 1.23 1.67 16 2 O -0.38 -9.44 8.47 -148.98 -1.26 -10.70 16 3 C 0.09 2.45 3.40 31.12 0.11 2.56 16 4 H 0.08 2.35 7.59 -2.38 -0.02 2.33 16 5 C -0.16 -4.98 4.05 -10.27 -0.04 -5.02 16 6 H 0.06 1.94 8.10 -2.38 -0.02 1.92 16 7 C -0.13 -3.40 8.26 71.98 0.59 -2.81 16 8 C 0.07 2.52 3.33 45.44 0.15 2.67 16 9 H 0.06 2.53 7.64 -2.39 -0.02 2.52 16 10 N -0.66 -28.55 5.45 -492.84 -2.68 -31.24 16 11 C 0.21 11.60 5.30 85.56 0.45 12.05 16 12 C -0.53 -30.64 9.32 25.60 0.24 -30.40 16 13 H 0.07 3.62 7.81 -2.91 -0.02 3.60 16 14 C 0.00 0.06 5.46 84.66 0.46 0.52 16 15 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 16 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 17 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 20 C -0.07 -2.02 1.35 -51.66 -0.07 -2.09 16 21 C -0.13 -3.32 8.21 71.98 0.59 -2.73 16 22 C -0.11 -3.37 8.61 71.98 0.62 -2.75 16 23 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.09 2.21 4.70 -2.39 -0.01 2.20 16 27 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.05 1.39 7.90 -2.39 -0.02 1.37 16 29 H 0.33 13.72 8.06 -89.69 -0.72 12.99 16 30 H -0.04 -2.40 8.14 -2.39 -0.02 -2.42 16 31 H 0.00 -0.16 8.13 -2.39 -0.02 -0.17 16 32 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.64 8.03 -2.39 -0.02 1.63 16 35 H 0.07 1.87 4.33 -2.38 -0.01 1.86 16 36 H 0.05 1.63 7.57 -2.39 -0.02 1.62 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -63.23 299.53 3.00 -60.23 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.30 Total: 18.25 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 4.34 Total: -26.33 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -2.40 Total: -87.98 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.26 Total: -10.70 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -63.23 3.00 -60.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389300853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.868 kcal (2) G-P(sol) polarization free energy of solvation -63.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds