Wall clock time and date at job start Sun Mar 29 2020 21:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46880 * 2 1 4 4 H 1.08997 * 110.41690 * 57.31263 * 3 2 1 5 5 C 1.54903 * 110.37034 * 179.62178 * 3 2 1 6 6 C 1.55143 * 101.65311 * 155.89852 * 5 3 2 7 7 C 1.54327 * 103.01639 * 324.34943 * 6 5 3 8 8 N 1.47437 * 107.23427 * 22.28178 * 7 6 5 9 9 C 1.46896 * 111.00121 * 123.25642 * 8 7 6 10 10 C 1.53002 * 109.47035 * 69.87466 * 9 8 7 11 11 O 1.42905 * 109.47079 * 64.99813 * 10 9 8 12 12 C 1.42899 * 113.99778 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47163 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00089 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00281 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99721 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00202 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46881 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46827 * 119.99902 * 17 15 13 20 20 H 1.48498 * 109.47252 * 240.00324 * 17 15 13 21 21 H 1.08999 * 109.47094 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47299 * 300.00512 * 1 2 3 23 23 H 1.09001 * 109.47063 * 60.00104 * 1 2 3 24 24 H 1.08997 * 109.47394 * 240.00217 * 2 1 3 25 25 H 1.09003 * 109.46658 * 119.99239 * 2 1 3 26 26 H 1.09002 * 110.99046 * 37.81081 * 5 3 2 27 27 H 1.08997 * 111.02556 * 274.00522 * 5 3 2 28 28 H 1.08999 * 110.70665 * 205.96443 * 6 5 3 29 29 H 1.08994 * 110.85141 * 82.79672 * 6 5 3 30 30 H 1.09000 * 109.88303 * 262.87788 * 7 6 5 31 31 H 1.08995 * 110.02138 * 141.76289 * 7 6 5 32 32 H 1.08997 * 109.47137 * 309.87646 * 9 8 7 33 33 H 1.09005 * 109.47283 * 189.87176 * 9 8 7 34 34 H 1.09004 * 109.46930 * 305.00039 * 10 9 8 35 35 H 1.09000 * 109.47312 * 184.99983 * 10 9 8 36 36 H 1.08997 * 109.47442 * 300.00036 * 12 11 10 37 37 H 1.08997 * 109.47171 * 60.00232 * 12 11 10 38 38 H 0.97007 * 119.99648 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6466 1.9850 0.8597 5 6 3.5888 1.4670 0.0096 6 6 3.8842 2.8574 -0.6121 7 6 2.7616 3.0155 -1.6592 8 7 1.6594 2.1231 -1.2561 9 6 0.4079 2.8741 -1.0896 10 6 -0.0937 3.3391 -2.4582 11 8 -0.4383 2.2012 -3.2510 12 6 -0.9207 2.5268 -4.5562 13 6 -1.2523 1.2587 -5.2999 14 1 -1.1095 0.3001 -4.8234 15 6 -1.7391 1.3224 -6.5883 16 7 -1.9135 2.4897 -7.1684 17 14 -2.1496 -0.2495 -7.5104 18 1 -1.8658 -1.4208 -6.6428 19 1 -3.5877 -0.2451 -7.8804 20 1 -1.3221 -0.3322 -8.7407 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8901 26 1 3.9957 0.6679 -0.6100 27 1 3.9746 1.4043 1.0271 28 1 4.8628 2.8649 -1.0921 29 1 3.8204 3.6412 0.1425 30 1 3.1300 2.7282 -2.6440 31 1 2.4137 4.0482 -1.6803 32 1 0.5866 3.7416 -0.4542 33 1 -0.3419 2.2327 -0.6265 34 1 0.6906 3.9068 -2.9590 35 1 -0.9725 3.9707 -2.3278 36 1 -1.8165 3.1416 -4.4696 37 1 -0.1533 3.0773 -5.1003 38 1 -2.2563 2.5345 -8.0747 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395424172.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:38 Heat of formation + Delta-G solvation = -56.670560 kcal Electronic energy + Delta-G solvation = -16363.420754 eV Core-core repulsion = 13819.394127 eV Total energy + Delta-G solvation = -2544.026627 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.27923 -36.44966 -33.14360 -32.90088 -32.09273 -28.12685 -27.74509 -26.45472 -23.44687 -22.22446 -21.58945 -20.49183 -19.66284 -16.54996 -16.28017 -15.82012 -15.13473 -14.40063 -14.23885 -14.09097 -13.67935 -13.08226 -12.97589 -12.77556 -12.52877 -12.35497 -11.81069 -11.59220 -11.11263 -11.09364 -10.98981 -10.73717 -10.71480 -10.60442 -10.55396 -10.38436 -10.11934 -9.81547 -8.99349 -8.72318 -8.05488 -7.96262 -6.04170 -4.04611 3.33609 3.39806 3.47085 4.11975 4.41473 4.67532 4.70006 4.96574 5.03914 5.24970 5.32476 5.36907 5.48188 5.56033 5.57700 5.68654 5.75614 5.80956 5.88111 5.92063 6.05269 6.10818 6.11553 6.18368 6.26578 6.30825 6.38909 6.52661 6.75927 7.19378 7.30517 7.40328 7.52497 7.88387 8.25146 8.71081 9.11080 9.60117 11.07678 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032035 B = 0.006017 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.836810 B = 4652.598496 C = 4950.899928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.104 4.104 3 C 0.071 3.929 4 H 0.048 0.952 5 C -0.124 4.124 6 C -0.142 4.142 7 C 0.042 3.958 8 N -0.507 5.507 9 C 0.048 3.952 10 C 0.068 3.932 11 O -0.378 6.378 12 C 0.194 3.806 13 C -0.507 4.507 14 H 0.067 0.933 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.283 1.283 21 H 0.048 0.952 22 H 0.041 0.959 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.088 0.912 34 H 0.034 0.966 35 H 0.036 0.964 36 H 0.001 0.999 37 H 0.002 0.998 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.921 0.354 14.946 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.142 4.142 3 C -0.037 4.037 4 H 0.066 0.934 5 C -0.163 4.163 6 C -0.181 4.181 7 C -0.086 4.086 8 N -0.232 5.232 9 C -0.080 4.080 10 C -0.010 4.010 11 O -0.298 6.298 12 C 0.119 3.881 13 C -0.546 4.546 14 H 0.085 0.915 15 C -0.146 4.146 16 N -0.541 5.541 17 Si 0.733 3.267 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.209 1.209 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.106 0.894 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.774 -0.124 14.446 16.902 hybrid contribution -0.189 0.352 -0.134 0.421 sum 8.585 0.228 14.312 16.691 Atomic orbital electron populations 1.21918 0.95738 1.01535 1.02429 1.21415 0.96421 0.94925 1.01394 1.22606 0.94160 0.95812 0.91099 0.93411 1.22733 0.95383 0.97502 1.00634 1.22785 0.99488 0.97210 0.98580 1.22848 0.90935 0.95585 0.99186 1.63421 1.02088 1.28234 1.29419 1.22503 0.92663 0.96350 0.96438 1.22235 0.97167 0.90156 0.91419 1.87935 1.84947 1.28781 1.28105 1.20163 0.92663 0.96948 0.78280 1.21109 1.42332 0.93080 0.98038 0.91477 1.24948 0.95701 0.96768 0.97216 1.69983 1.46252 1.23679 1.14169 0.86309 0.77864 0.83016 0.79488 1.19458 1.20939 1.20910 0.93268 0.93987 0.89964 0.91052 0.92686 0.90510 0.91367 0.91002 0.91967 0.90382 0.92997 0.94655 0.89419 0.94801 0.94589 0.98119 0.98003 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 8.72 37.16 0.32 -1.89 16 2 C -0.10 -1.34 5.66 -26.73 -0.15 -1.49 16 3 C 0.07 0.92 2.58 -66.18 -0.17 0.75 16 4 H 0.05 0.59 7.81 -51.93 -0.41 0.18 16 5 C -0.12 -1.36 6.49 -24.59 -0.16 -1.52 16 6 C -0.14 -1.55 6.94 -24.90 -0.17 -1.72 16 7 C 0.04 0.59 6.14 -2.83 -0.02 0.57 16 8 N -0.51 -7.94 4.57 -223.38 -1.02 -8.96 16 9 C 0.05 0.77 4.43 -3.82 -0.02 0.75 16 10 C 0.07 1.33 6.04 37.16 0.22 1.55 16 11 O -0.38 -9.42 10.27 -35.23 -0.36 -9.79 16 12 C 0.19 5.49 5.69 36.00 0.20 5.69 16 13 C -0.51 -15.33 9.43 -34.44 -0.32 -15.65 16 14 H 0.07 2.03 7.81 -52.48 -0.41 1.62 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 17 Si 0.91 22.33 29.54 -169.99 -5.02 17.31 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.08 1.41 6.00 -51.93 -0.31 1.10 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 0.70 6.94 -51.93 -0.36 0.34 16 32 H 0.04 0.48 7.96 -51.93 -0.41 0.07 16 33 H 0.09 1.39 5.29 -51.93 -0.27 1.12 16 34 H 0.03 0.65 7.04 -51.93 -0.37 0.28 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 37 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 301.36 15.07 4.54 4.54 Total: -1.00 -31.63 301.36 -8.23 -39.86 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -6.74 Total: -4.70 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -0.36 Total: -11.46 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.28 Total: -35.77 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.36 Total: -9.79 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.63 -8.23 -39.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395424172.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.808 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds