Wall clock time and date at job start Sun Mar 29 2020 21:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46880 * 2 1 4 4 H 1.08997 * 110.41690 * 57.31263 * 3 2 1 5 5 C 1.54903 * 110.37034 * 179.62178 * 3 2 1 6 6 C 1.55143 * 101.65311 * 155.89852 * 5 3 2 7 7 C 1.54327 * 103.01639 * 324.34943 * 6 5 3 8 8 N 1.47437 * 107.23427 * 22.28178 * 7 6 5 9 9 C 1.46896 * 111.00121 * 123.25642 * 8 7 6 10 10 C 1.53002 * 109.47035 * 69.87466 * 9 8 7 11 11 O 1.42905 * 109.47079 * 64.99813 * 10 9 8 12 12 C 1.42899 * 113.99778 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47163 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00089 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00281 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99721 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00202 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46881 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46827 * 119.99902 * 17 15 13 20 20 H 1.48498 * 109.47252 * 240.00324 * 17 15 13 21 21 H 1.08999 * 109.47094 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47299 * 300.00512 * 1 2 3 23 23 H 1.09001 * 109.47063 * 60.00104 * 1 2 3 24 24 H 1.08997 * 109.47394 * 240.00217 * 2 1 3 25 25 H 1.09003 * 109.46658 * 119.99239 * 2 1 3 26 26 H 1.09002 * 110.99046 * 37.81081 * 5 3 2 27 27 H 1.08997 * 111.02556 * 274.00522 * 5 3 2 28 28 H 1.08999 * 110.70665 * 205.96443 * 6 5 3 29 29 H 1.08994 * 110.85141 * 82.79672 * 6 5 3 30 30 H 1.09000 * 109.88303 * 262.87788 * 7 6 5 31 31 H 1.08995 * 110.02138 * 141.76289 * 7 6 5 32 32 H 1.08997 * 109.47137 * 309.87646 * 9 8 7 33 33 H 1.09005 * 109.47283 * 189.87176 * 9 8 7 34 34 H 1.09004 * 109.46930 * 305.00039 * 10 9 8 35 35 H 1.09000 * 109.47312 * 184.99983 * 10 9 8 36 36 H 1.08997 * 109.47442 * 300.00036 * 12 11 10 37 37 H 1.08997 * 109.47171 * 60.00232 * 12 11 10 38 38 H 0.97007 * 119.99648 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6466 1.9850 0.8597 5 6 3.5888 1.4670 0.0096 6 6 3.8842 2.8574 -0.6121 7 6 2.7616 3.0155 -1.6592 8 7 1.6594 2.1231 -1.2561 9 6 0.4079 2.8741 -1.0896 10 6 -0.0937 3.3391 -2.4582 11 8 -0.4383 2.2012 -3.2510 12 6 -0.9207 2.5268 -4.5562 13 6 -1.2523 1.2587 -5.2999 14 1 -1.1095 0.3001 -4.8234 15 6 -1.7391 1.3224 -6.5883 16 7 -1.9135 2.4897 -7.1684 17 14 -2.1496 -0.2495 -7.5104 18 1 -1.8658 -1.4208 -6.6428 19 1 -3.5877 -0.2451 -7.8804 20 1 -1.3221 -0.3322 -8.7407 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8901 26 1 3.9957 0.6679 -0.6100 27 1 3.9746 1.4043 1.0271 28 1 4.8628 2.8649 -1.0921 29 1 3.8204 3.6412 0.1425 30 1 3.1300 2.7282 -2.6440 31 1 2.4137 4.0482 -1.6803 32 1 0.5866 3.7416 -0.4542 33 1 -0.3419 2.2327 -0.6265 34 1 0.6906 3.9068 -2.9590 35 1 -0.9725 3.9707 -2.3278 36 1 -1.8165 3.1416 -4.4696 37 1 -0.1533 3.0773 -5.1003 38 1 -2.2563 2.5345 -8.0747 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395424172.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:38 Heat of formation + Delta-G solvation = -77.631032 kcal Electronic energy + Delta-G solvation = -16364.329668 eV Core-core repulsion = 13819.394127 eV Total energy + Delta-G solvation = -2544.935541 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.38606 -38.32295 -35.01144 -34.17317 -33.51727 -29.88151 -28.80392 -28.26267 -24.69894 -24.42250 -22.72703 -21.59375 -20.74756 -18.60985 -17.68581 -17.44062 -16.67147 -16.27944 -15.87849 -15.36382 -15.09558 -14.42196 -14.16132 -14.03994 -13.84916 -13.57357 -13.47688 -13.10829 -12.82430 -12.71422 -12.55776 -12.19142 -12.10899 -11.98029 -11.73568 -11.53610 -11.38358 -11.30906 -11.13637 -10.85342 -10.17162 -9.09158 -8.31804 -6.43577 1.39046 1.40899 1.55877 2.35293 3.01273 3.01785 3.25542 3.72260 3.78502 4.07026 4.21567 4.27556 4.28796 4.39517 4.49002 4.52553 4.58633 4.62891 4.76962 4.82201 4.82607 4.94031 5.00336 5.04798 5.07510 5.15778 5.18905 5.23142 5.36022 5.46985 5.56129 5.59152 5.98093 6.20399 6.28060 6.58079 6.87465 7.28803 8.81024 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032035 B = 0.006017 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.836810 B = 4652.598496 C = 4950.899928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.102 4.102 3 C 0.069 3.931 4 H 0.062 0.938 5 C -0.119 4.119 6 C -0.132 4.132 7 C 0.037 3.963 8 N -0.538 5.538 9 C 0.059 3.941 10 C 0.059 3.941 11 O -0.391 6.391 12 C 0.210 3.790 13 C -0.543 4.543 14 H 0.059 0.941 15 C 0.005 3.995 16 N -0.932 5.932 17 Si 0.983 3.017 18 H -0.265 1.265 19 H -0.269 1.269 20 H -0.271 1.271 21 H 0.051 0.949 22 H 0.059 0.941 23 H 0.044 0.956 24 H 0.048 0.952 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.032 0.968 35 H 0.044 0.956 36 H -0.017 1.017 37 H -0.021 1.021 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.568 -0.392 16.235 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.140 4.140 3 C -0.038 4.038 4 H 0.080 0.920 5 C -0.157 4.157 6 C -0.170 4.170 7 C -0.090 4.090 8 N -0.263 5.263 9 C -0.069 4.069 10 C -0.018 4.018 11 O -0.311 6.311 12 C 0.134 3.866 13 C -0.580 4.580 14 H 0.077 0.923 15 C -0.193 4.193 16 N -0.572 5.572 17 Si 0.806 3.194 18 H -0.189 1.189 19 H -0.195 1.195 20 H -0.196 1.196 21 H 0.070 0.930 22 H 0.078 0.922 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.001 0.999 37 H -0.003 1.003 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.432 -0.855 15.756 18.383 hybrid contribution -0.383 0.647 -0.503 0.905 sum 9.049 -0.208 15.253 17.737 Atomic orbital electron populations 1.21857 0.96629 1.01396 1.01386 1.21423 0.95568 0.95373 1.01610 1.22694 0.95679 0.95244 0.90187 0.92008 1.22731 0.93734 0.97148 1.02071 1.22739 0.98590 0.97765 0.97932 1.22838 0.91784 0.95244 0.99180 1.63309 1.02388 1.29024 1.31619 1.22380 0.92967 0.97523 0.94052 1.22582 0.97561 0.89014 0.92647 1.87903 1.84851 1.31418 1.26927 1.19773 0.91114 0.95904 0.79763 1.21392 1.44079 0.93250 0.99315 0.92273 1.25969 0.94684 1.00850 0.97779 1.70085 1.46109 1.26129 1.14872 0.85139 0.78283 0.78028 0.77971 1.18933 1.19460 1.19596 0.93021 0.92185 0.93691 0.93335 0.89861 0.91327 0.88618 0.89919 0.90220 0.92911 0.92845 0.91657 0.89574 0.94947 0.93825 0.99946 1.00315 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.22 8.72 71.98 0.63 -3.59 16 2 C -0.10 -2.50 5.66 30.60 0.17 -2.32 16 3 C 0.07 1.65 2.58 45.39 0.12 1.77 16 4 H 0.06 1.31 7.81 -2.39 -0.02 1.30 16 5 C -0.12 -2.28 6.49 31.98 0.21 -2.07 16 6 C -0.13 -2.55 6.94 31.78 0.22 -2.33 16 7 C 0.04 1.02 6.14 86.65 0.53 1.55 16 8 N -0.54 -16.59 4.57 -860.65 -3.93 -20.53 16 9 C 0.06 1.82 4.43 86.30 0.38 2.21 16 10 C 0.06 2.36 6.04 71.98 0.44 2.79 16 11 O -0.39 -20.29 10.27 -148.98 -1.53 -21.82 16 12 C 0.21 12.40 5.69 71.24 0.41 12.80 16 13 C -0.54 -33.73 9.43 25.60 0.24 -33.49 16 14 H 0.06 3.68 7.81 -2.91 -0.02 3.65 16 15 C 0.01 0.31 5.46 84.65 0.46 0.77 16 16 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 17 Si 0.98 45.79 29.54 68.60 2.03 47.81 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.04 1.56 6.00 -2.39 -0.01 1.55 16 24 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.07 1.43 8.06 -2.39 -0.02 1.41 16 27 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 1.41 6.94 -2.39 -0.02 1.39 16 32 H 0.07 1.64 7.96 -2.39 -0.02 1.63 16 33 H 0.09 2.71 5.29 -2.38 -0.01 2.69 16 34 H 0.03 1.28 7.04 -2.38 -0.02 1.27 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 37 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 38 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 Total: -1.00 -69.33 301.36 1.65 -67.68 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.00 Total: 6.11 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 3.80 Total: -21.90 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -3.65 Total: -77.89 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -1.53 Total: -21.82 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -69.33 1.65 -67.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395424172.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.947 kcal (2) G-P(sol) polarization free energy of solvation -69.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds