Wall clock time and date at job start Sun Mar 29 2020 21:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46719 * 2 1 4 4 H 1.08997 * 109.47323 * 305.75774 * 3 2 1 5 5 C 1.50700 * 109.47140 * 185.75293 * 3 2 1 6 6 H 1.08001 * 120.00291 * 245.48194 * 5 3 2 7 7 C 1.37877 * 119.99751 * 65.47771 * 5 3 2 8 8 N 1.31513 * 119.99839 * 192.06684 * 7 5 3 9 9 Si 1.86797 * 120.00021 * 12.06601 * 7 5 3 10 10 H 1.48490 * 109.47346 * 86.79716 * 9 7 5 11 11 H 1.48503 * 109.47088 * 206.79741 * 9 7 5 12 12 H 1.48499 * 109.47345 * 326.79460 * 9 7 5 13 13 N 1.46907 * 109.47064 * 65.75432 * 3 2 1 14 14 C 1.46898 * 110.99884 * 205.80603 * 13 3 2 15 15 H 1.09005 * 110.98825 * 322.20050 * 14 13 3 16 16 C 1.54950 * 111.12632 * 86.39774 * 14 13 3 17 17 O 1.43642 * 105.13321 * 154.36003 * 16 14 13 18 18 C 1.43232 * 109.97839 * 335.57939 * 17 16 14 19 19 C 1.52999 * 109.83529 * 121.22113 * 18 17 16 20 20 C 1.52999 * 109.83002 * 242.19637 * 18 17 16 21 21 C 1.54387 * 107.58518 * 1.70759 * 18 17 16 22 22 H 1.09002 * 109.47264 * 293.91197 * 1 2 3 23 23 H 1.08997 * 109.47321 * 53.91998 * 1 2 3 24 24 H 1.09008 * 109.46831 * 173.91843 * 1 2 3 25 25 H 1.09003 * 109.46724 * 119.99603 * 2 1 3 26 26 H 1.08992 * 109.47416 * 240.00111 * 2 1 3 27 27 H 0.97005 * 119.99912 * 179.97438 * 8 7 5 28 28 H 1.00894 * 111.00187 * 329.75877 * 13 3 2 29 29 H 1.08993 * 110.31076 * 273.28254 * 16 14 13 30 30 H 1.09006 * 110.30554 * 35.45047 * 16 14 13 31 31 H 1.08996 * 109.46623 * 61.45439 * 19 18 17 32 32 H 1.08998 * 109.47161 * 181.45373 * 19 18 17 33 33 H 1.09002 * 109.46993 * 301.45788 * 19 18 17 34 34 H 1.09000 * 109.46953 * 58.54378 * 20 18 17 35 35 H 1.09001 * 109.47533 * 178.53886 * 20 18 17 36 36 H 1.08996 * 109.47363 * 298.54280 * 20 18 17 37 37 H 1.09003 * 110.84544 * 263.16885 * 21 18 17 38 38 H 1.08996 * 110.84606 * 139.54914 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5948 1.9852 -0.8339 5 6 3.5402 1.4450 -0.1424 6 1 4.1588 1.8054 0.6662 7 6 4.1230 0.9871 -1.3050 8 7 5.4185 0.7646 -1.3478 9 14 3.0726 0.6828 -2.8194 10 1 2.9435 1.9432 -3.5937 11 1 3.7139 -0.3549 -3.6663 12 1 1.7254 0.2180 -2.4022 13 7 1.6669 2.0938 1.2629 14 6 1.5672 3.5497 1.0950 15 1 2.3417 3.9191 0.4227 16 6 0.1569 3.9597 0.6011 17 8 -0.0194 5.3124 1.0511 18 6 0.8147 5.5625 2.1884 19 6 1.7692 6.7198 1.8877 20 6 -0.0517 5.9040 3.4023 21 6 1.6222 4.2763 2.4664 22 1 -0.3634 0.4165 0.9395 23 1 -0.3634 0.6052 -0.8305 24 1 -0.3633 -1.0220 -0.1089 25 1 1.8933 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 5.8285 0.4421 -2.1656 28 1 0.8065 1.7120 1.6262 29 1 0.1088 3.9135 -0.4867 30 1 -0.6013 3.3125 1.0421 31 1 1.1930 7.6226 1.6852 32 1 2.4182 6.8881 2.7471 33 1 2.3762 6.4732 1.0166 34 1 -0.7350 5.0792 3.6047 35 1 0.5872 6.0677 4.2702 36 1 -0.6245 6.8083 3.1971 37 1 1.1438 3.6780 3.2419 38 1 2.6504 4.5150 2.7380 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396811912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:44 Heat of formation + Delta-G solvation = -54.943828 kcal Electronic energy + Delta-G solvation = -16821.026530 eV Core-core repulsion = 14277.074780 eV Total energy + Delta-G solvation = -2543.951750 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.68970 -36.43953 -32.97833 -32.72755 -31.83467 -28.72658 -27.26514 -26.59412 -25.40041 -22.65690 -20.69976 -19.99913 -19.65997 -16.76016 -16.08154 -15.73567 -14.97605 -14.53516 -14.12132 -13.82318 -13.35021 -13.17966 -12.94784 -12.67809 -12.37432 -12.25408 -11.92893 -11.89429 -11.53982 -11.47667 -11.17807 -10.89708 -10.75640 -10.53726 -10.30501 -10.18746 -9.92971 -9.41153 -9.34368 -9.18340 -8.50476 -7.43231 -6.07270 -4.01835 3.25903 3.34619 3.37315 3.95885 4.41019 4.86277 4.87152 5.07297 5.16284 5.27378 5.33424 5.46964 5.55499 5.67647 5.77770 5.80936 5.82579 5.84108 5.95947 5.98182 6.04523 6.07002 6.25414 6.32038 6.38310 6.48334 6.56720 6.61218 6.72761 6.93053 7.18200 7.31349 7.73751 7.90727 8.19387 8.72219 9.07734 9.57928 11.06066 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031389 B = 0.007997 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.828090 B = 3500.600602 C = 3834.459336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.134 4.134 3 C 0.193 3.807 4 H -0.003 1.003 5 C -0.502 4.502 6 H 0.080 0.920 7 C 0.071 3.929 8 N -0.896 5.896 9 Si 0.856 3.144 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.250 1.250 13 N -0.660 5.660 14 C 0.068 3.932 15 H 0.102 0.898 16 C 0.020 3.980 17 O -0.377 6.377 18 C 0.096 3.904 19 C -0.151 4.151 20 C -0.150 4.150 21 C -0.135 4.135 22 H 0.046 0.954 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.263 0.737 28 H 0.321 0.679 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.523 6.447 5.909 13.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.172 4.172 3 C 0.085 3.915 4 H 0.014 0.986 5 C -0.540 4.540 6 H 0.098 0.902 7 C -0.131 4.131 8 N -0.534 5.534 9 Si 0.684 3.316 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.174 1.174 13 N -0.290 5.290 14 C -0.043 4.043 15 H 0.120 0.880 16 C -0.059 4.059 17 O -0.296 6.296 18 C 0.057 3.943 19 C -0.209 4.209 20 C -0.208 4.208 21 C -0.173 4.173 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.140 0.860 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.847 6.539 5.936 13.227 hybrid contribution -1.149 -0.321 -1.420 1.855 sum -10.996 6.218 4.516 13.415 Atomic orbital electron populations 1.21927 0.98596 1.00496 1.00354 1.22211 0.92480 1.00117 1.02436 1.19554 0.96837 0.89552 0.85584 0.98573 1.20994 0.89067 1.41971 1.01951 0.90235 1.24923 0.94718 0.94908 0.98516 1.69942 1.10424 1.45416 1.27603 0.87382 0.82148 0.78239 0.83849 1.20699 1.21460 1.17433 1.60486 1.36542 1.00905 1.31116 1.23188 0.95174 0.90305 0.95679 0.88035 1.24235 0.98307 0.83503 0.99874 1.88370 1.64878 1.29474 1.46913 1.22101 0.90258 0.95587 0.86381 1.22059 0.98804 0.97685 1.02307 1.22074 0.99925 1.01866 0.96914 1.23144 1.01028 0.94597 0.98522 0.93541 0.93742 0.93672 0.91781 0.91574 0.92753 0.86044 0.90272 0.92929 0.92453 0.91657 0.91811 0.92443 0.91674 0.92391 0.90619 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.64 37.16 0.36 -2.25 16 2 C -0.13 -2.79 4.79 -26.73 -0.13 -2.92 16 3 C 0.19 4.36 1.48 -68.86 -0.10 4.26 16 4 H 0.00 -0.08 6.52 -51.93 -0.34 -0.41 16 5 C -0.50 -13.83 9.03 -34.44 -0.31 -14.14 16 6 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 7 C 0.07 2.01 5.37 -17.82 -0.10 1.92 16 8 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 9 Si 0.86 20.79 25.83 -169.99 -4.39 16.40 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.25 -5.61 5.27 56.52 0.30 -5.31 16 13 N -0.66 -12.93 6.18 -98.60 -0.61 -13.54 16 14 C 0.07 1.23 3.14 -65.47 -0.21 1.02 16 15 H 0.10 2.09 7.81 -51.93 -0.41 1.68 16 16 C 0.02 0.32 7.27 38.19 0.28 0.60 16 17 O -0.38 -6.19 10.67 -35.23 -0.38 -6.57 16 18 C 0.10 1.35 1.27 -89.89 -0.11 1.24 16 19 C -0.15 -1.94 8.73 37.16 0.32 -1.61 16 20 C -0.15 -1.75 8.75 37.16 0.32 -1.43 16 21 C -0.13 -2.04 5.79 -24.79 -0.14 -2.18 16 22 H 0.05 0.69 6.67 -51.93 -0.35 0.34 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 25 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.07 1.47 4.64 -51.93 -0.24 1.23 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.32 5.58 6.18 -39.30 -0.24 5.34 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.05 0.80 7.79 -51.93 -0.40 0.40 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.09 7.85 -51.93 -0.41 0.68 16 38 H 0.08 1.26 7.82 -51.93 -0.41 0.86 16 LS Contribution 294.45 15.07 4.44 4.44 Total: -1.00 -29.50 294.45 -6.66 -36.16 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.68 Total: 4.99 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 0.19 Total: -15.50 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.16 Total: -39.92 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.38 Total: -6.57 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.39 Total: 16.40 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.50 -6.66 -36.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396811912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.782 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds