Wall clock time and date at job start Sun Mar 29 2020 21:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46719 * 2 1 4 4 H 1.08997 * 109.47323 * 305.75774 * 3 2 1 5 5 C 1.50700 * 109.47140 * 185.75293 * 3 2 1 6 6 H 1.08001 * 120.00291 * 245.48194 * 5 3 2 7 7 C 1.37877 * 119.99751 * 65.47771 * 5 3 2 8 8 N 1.31513 * 119.99839 * 192.06684 * 7 5 3 9 9 Si 1.86797 * 120.00021 * 12.06601 * 7 5 3 10 10 H 1.48490 * 109.47346 * 86.79716 * 9 7 5 11 11 H 1.48503 * 109.47088 * 206.79741 * 9 7 5 12 12 H 1.48499 * 109.47345 * 326.79460 * 9 7 5 13 13 N 1.46907 * 109.47064 * 65.75432 * 3 2 1 14 14 C 1.46898 * 110.99884 * 205.80603 * 13 3 2 15 15 H 1.09005 * 110.98825 * 322.20050 * 14 13 3 16 16 C 1.54950 * 111.12632 * 86.39774 * 14 13 3 17 17 O 1.43642 * 105.13321 * 154.36003 * 16 14 13 18 18 C 1.43232 * 109.97839 * 335.57939 * 17 16 14 19 19 C 1.52999 * 109.83529 * 121.22113 * 18 17 16 20 20 C 1.52999 * 109.83002 * 242.19637 * 18 17 16 21 21 C 1.54387 * 107.58518 * 1.70759 * 18 17 16 22 22 H 1.09002 * 109.47264 * 293.91197 * 1 2 3 23 23 H 1.08997 * 109.47321 * 53.91998 * 1 2 3 24 24 H 1.09008 * 109.46831 * 173.91843 * 1 2 3 25 25 H 1.09003 * 109.46724 * 119.99603 * 2 1 3 26 26 H 1.08992 * 109.47416 * 240.00111 * 2 1 3 27 27 H 0.97005 * 119.99912 * 179.97438 * 8 7 5 28 28 H 1.00894 * 111.00187 * 329.75877 * 13 3 2 29 29 H 1.08993 * 110.31076 * 273.28254 * 16 14 13 30 30 H 1.09006 * 110.30554 * 35.45047 * 16 14 13 31 31 H 1.08996 * 109.46623 * 61.45439 * 19 18 17 32 32 H 1.08998 * 109.47161 * 181.45373 * 19 18 17 33 33 H 1.09002 * 109.46993 * 301.45788 * 19 18 17 34 34 H 1.09000 * 109.46953 * 58.54378 * 20 18 17 35 35 H 1.09001 * 109.47533 * 178.53886 * 20 18 17 36 36 H 1.08996 * 109.47363 * 298.54280 * 20 18 17 37 37 H 1.09003 * 110.84544 * 263.16885 * 21 18 17 38 38 H 1.08996 * 110.84606 * 139.54914 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5948 1.9852 -0.8339 5 6 3.5402 1.4450 -0.1424 6 1 4.1588 1.8054 0.6662 7 6 4.1230 0.9871 -1.3050 8 7 5.4185 0.7646 -1.3478 9 14 3.0726 0.6828 -2.8194 10 1 2.9435 1.9432 -3.5937 11 1 3.7139 -0.3549 -3.6663 12 1 1.7254 0.2180 -2.4022 13 7 1.6669 2.0938 1.2629 14 6 1.5672 3.5497 1.0950 15 1 2.3417 3.9191 0.4227 16 6 0.1569 3.9597 0.6011 17 8 -0.0194 5.3124 1.0511 18 6 0.8147 5.5625 2.1884 19 6 1.7692 6.7198 1.8877 20 6 -0.0517 5.9040 3.4023 21 6 1.6222 4.2763 2.4664 22 1 -0.3634 0.4165 0.9395 23 1 -0.3634 0.6052 -0.8305 24 1 -0.3633 -1.0220 -0.1089 25 1 1.8933 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 5.8285 0.4421 -2.1656 28 1 0.8065 1.7120 1.6262 29 1 0.1088 3.9135 -0.4867 30 1 -0.6013 3.3125 1.0421 31 1 1.1930 7.6226 1.6852 32 1 2.4182 6.8881 2.7471 33 1 2.3762 6.4732 1.0166 34 1 -0.7350 5.0792 3.6047 35 1 0.5872 6.0677 4.2702 36 1 -0.6245 6.8083 3.1971 37 1 1.1438 3.6780 3.2419 38 1 2.6504 4.5150 2.7380 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396811912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:43 Heat of formation + Delta-G solvation = -75.735801 kcal Electronic energy + Delta-G solvation = -16821.928138 eV Core-core repulsion = 14277.074780 eV Total energy + Delta-G solvation = -2544.853357 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.95692 -38.07710 -34.58145 -34.09951 -33.57930 -30.22746 -28.43854 -28.19752 -26.63591 -24.39875 -22.11376 -21.64938 -20.94454 -18.83196 -17.47625 -17.08514 -16.52537 -16.08951 -15.75020 -15.20610 -14.74718 -14.54795 -14.38083 -14.08475 -13.80497 -13.63607 -13.43900 -13.01452 -12.89968 -12.73370 -12.56172 -12.40167 -12.32821 -12.18934 -11.85627 -11.68279 -11.39035 -11.21730 -11.09607 -10.63126 -10.52107 -9.05535 -8.27513 -6.26435 1.32410 1.35907 1.44120 2.34702 2.73304 3.05885 3.50430 3.64578 3.88371 4.00338 4.15770 4.20119 4.29962 4.37737 4.40557 4.49317 4.64401 4.73153 4.77819 4.84019 4.85486 4.92956 5.00746 5.08443 5.10469 5.13470 5.18216 5.27838 5.33064 5.42903 5.48908 5.78614 6.05472 6.12677 6.47780 6.79442 6.92728 7.37566 8.89820 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031389 B = 0.007997 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.828090 B = 3500.600602 C = 3834.459336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.199 3.801 4 H -0.004 1.004 5 C -0.504 4.504 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.948 5.948 9 Si 0.921 3.079 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.216 1.216 13 N -0.666 5.666 14 C 0.063 3.937 15 H 0.064 0.936 16 C 0.028 3.972 17 O -0.390 6.390 18 C 0.092 3.908 19 C -0.152 4.152 20 C -0.145 4.145 21 C -0.128 4.128 22 H 0.066 0.934 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.263 0.737 28 H 0.338 0.662 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.501 6.571 6.399 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C 0.090 3.910 4 H 0.013 0.987 5 C -0.543 4.543 6 H 0.048 0.952 7 C -0.185 4.185 8 N -0.589 5.589 9 Si 0.745 3.255 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.139 1.139 13 N -0.298 5.298 14 C -0.049 4.049 15 H 0.082 0.918 16 C -0.050 4.050 17 O -0.310 6.310 18 C 0.053 3.947 19 C -0.209 4.209 20 C -0.202 4.202 21 C -0.166 4.166 22 H 0.085 0.915 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.159 0.841 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.860 6.673 6.454 15.861 hybrid contribution -0.127 -0.296 -1.463 1.498 sum -12.988 6.377 4.991 15.306 Atomic orbital electron populations 1.21851 0.94751 1.02300 1.01705 1.22081 0.95861 0.97864 1.01403 1.19341 0.93385 0.91337 0.86912 0.98695 1.21271 0.91758 1.40784 1.00459 0.95221 1.25773 0.95879 0.94906 1.01906 1.70100 1.12701 1.47492 1.28572 0.86340 0.81921 0.77991 0.79248 1.20737 1.21519 1.13868 1.60312 1.37880 1.01858 1.29778 1.23104 0.95413 0.89397 0.96967 0.91799 1.24100 0.97257 0.84000 0.99659 1.88356 1.65337 1.29318 1.47947 1.22307 0.90549 0.95095 0.86769 1.22085 0.98806 0.97730 1.02282 1.22044 0.99870 1.02253 0.96076 1.23115 1.01274 0.95131 0.97078 0.91511 0.93335 0.91476 0.92505 0.93098 0.92781 0.84115 0.90945 0.90931 0.91422 0.89783 0.93896 0.92160 0.89816 0.91693 0.89267 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.36 9.64 71.98 0.69 -3.67 16 2 C -0.13 -5.30 4.79 30.59 0.15 -5.15 16 3 C 0.20 8.91 1.48 44.17 0.07 8.98 16 4 H 0.00 -0.20 6.52 -2.39 -0.02 -0.22 16 5 C -0.50 -28.77 9.03 25.60 0.23 -28.54 16 6 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 7 C 0.01 0.72 5.37 84.65 0.45 1.17 16 8 N -0.95 -59.80 13.96 21.45 0.30 -59.50 16 9 Si 0.92 43.16 25.83 68.60 1.77 44.93 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.22 -8.89 5.27 99.48 0.52 -8.37 16 13 N -0.67 -25.60 6.18 -465.87 -2.88 -28.48 16 14 C 0.06 2.23 3.14 46.37 0.15 2.38 16 15 H 0.06 2.74 7.81 -2.38 -0.02 2.72 16 16 C 0.03 0.88 7.27 72.65 0.53 1.41 16 17 O -0.39 -12.08 10.67 -148.98 -1.59 -13.67 16 18 C 0.09 2.40 1.27 -10.32 -0.01 2.39 16 19 C -0.15 -3.70 8.73 71.98 0.63 -3.07 16 20 C -0.15 -2.91 8.75 71.98 0.63 -2.29 16 21 C -0.13 -3.72 5.79 31.85 0.18 -3.53 16 22 H 0.07 1.68 6.67 -2.39 -0.02 1.67 16 23 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 26 H 0.05 2.15 4.64 -2.39 -0.01 2.14 16 27 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 28 H 0.34 10.92 6.18 -89.70 -0.55 10.37 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.07 1.97 7.79 -2.38 -0.02 1.95 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 2.35 7.85 -2.39 -0.02 2.33 16 38 H 0.08 2.33 7.82 -2.39 -0.02 2.31 16 Total: -1.00 -66.07 294.45 1.57 -64.49 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.28 Total: 22.15 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 3.69 Total: -29.92 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -2.58 Total: -87.97 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -1.59 Total: -13.67 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.77 Total: 44.93 kcal Total: -66.07 1.57 -64.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396811912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.245 kcal (2) G-P(sol) polarization free energy of solvation -66.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds