Wall clock time and date at job start Sun Mar 29 2020 21:50:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.52999 * 109.47098 * 2 1
4 4 H 1.08999 * 109.47426 * 304.27132 * 3 2 1
5 5 C 1.50699 * 109.47347 * 184.26938 * 3 2 1
6 6 H 1.08003 * 119.99997 * 240.00289 * 5 3 2
7 7 C 1.37874 * 120.00155 * 60.00022 * 5 3 2
8 8 N 1.31517 * 119.99790 * 0.02562 * 7 5 3
9 9 Si 1.86804 * 120.00395 * 179.97438 * 7 5 3
10 10 H 1.48501 * 109.46542 * 59.99932 * 9 7 5
11 11 H 1.48496 * 109.47297 * 179.97438 * 9 7 5
12 12 H 1.48502 * 109.46855 * 300.00286 * 9 7 5
13 13 N 1.46904 * 109.47051 * 64.26885 * 3 2 1
14 14 C 1.46905 * 110.99871 * 205.90833 * 13 3 2
15 15 C 1.53001 * 109.46720 * 174.66637 * 14 13 3
16 16 C 1.52995 * 110.75104 * 297.97928 * 15 14 13
17 17 C 1.55311 * 110.84515 * 174.28428 * 15 14 13
18 18 C 1.54947 * 100.93922 * 207.67383 * 17 15 14
19 19 O 1.43647 * 105.13825 * 36.44950 * 18 17 15
20 20 C 1.43241 * 109.96866 * 335.56494 * 19 18 17
21 21 H 1.09005 * 109.47428 * 54.92239 * 1 2 3
22 22 H 1.08999 * 109.47422 * 174.92425 * 1 2 3
23 23 H 1.09005 * 109.47410 * 294.92298 * 1 2 3
24 24 H 1.09001 * 109.47294 * 240.00624 * 2 1 3
25 25 H 1.09000 * 109.47459 * 120.00031 * 2 1 3
26 26 H 0.96996 * 120.00033 * 180.02562 * 8 7 5
27 27 H 1.00896 * 111.00191 * 81.95904 * 13 3 2
28 28 H 1.08991 * 109.47361 * 54.66506 * 14 13 3
29 29 H 1.08998 * 109.46894 * 294.65955 * 14 13 3
30 30 H 1.09006 * 109.47279 * 182.02149 * 16 15 14
31 31 H 1.09003 * 109.47648 * 302.01666 * 16 15 14
32 32 H 1.09000 * 109.47486 * 62.02381 * 16 15 14
33 33 H 1.08997 * 111.12205 * 89.75515 * 17 15 14
34 34 H 1.09000 * 111.12302 * 325.59414 * 17 15 14
35 35 H 1.08994 * 110.31369 * 277.52737 * 18 17 15
36 36 H 1.08998 * 110.30557 * 155.35963 * 18 17 15
37 37 H 1.09007 * 109.82577 * 121.22553 * 20 19 18
38 38 H 1.08995 * 109.83526 * 242.11475 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6155 1.9780 -0.8492
5 6 3.5432 1.4439 -0.1058
6 1 4.1391 1.8917 0.6757
7 6 4.1578 0.8733 -1.2001
8 7 3.4321 0.3284 -2.1520
9 14 6.0212 0.8757 -1.3317
10 1 6.5999 0.1466 -0.1746
11 1 6.4293 0.2057 -2.5925
12 1 6.5156 2.2760 -1.3320
13 7 1.6362 2.1046 1.2477
14 6 1.5386 3.5589 1.0642
15 6 0.9897 4.1982 2.3413
16 6 -0.4198 3.6848 2.6420
17 6 1.0075 5.7476 2.2353
18 6 1.1389 6.1429 3.7278
19 8 1.9968 5.1462 4.3057
20 6 1.9346 3.9406 3.5347
21 1 -0.3634 0.5906 -0.8410
22 1 -0.3634 -1.0236 -0.0909
23 1 -0.3634 0.4331 0.9320
24 1 1.8933 -0.5137 -0.8900
25 1 1.8933 -0.5138 0.8900
26 1 3.8645 -0.0733 -2.9218
27 1 2.2696 1.8767 1.9993
28 1 0.8688 3.7760 0.2323
29 1 2.5271 3.9652 0.8504
30 1 -0.8041 4.1795 3.5341
31 1 -1.0733 3.9009 1.7968
32 1 -0.3863 2.6082 2.8095
33 1 0.0768 6.1229 1.8100
34 1 1.8671 6.0922 1.6605
35 1 0.1620 6.1273 4.2108
36 1 1.5912 7.1304 3.8191
37 1 2.9291 3.6831 3.1701
38 1 1.5442 3.1288 4.1485
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000397293837.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:50:09
Heat of formation + Delta-G solvation = -83.617331 kcal
Electronic energy + Delta-G solvation = -16699.443694 eV
Core-core repulsion = 14154.248567 eV
Total energy + Delta-G solvation = -2545.195126 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.82060 -37.98258 -35.51797 -33.78209 -32.30888 -30.45651 -28.43380 -27.50867
-25.84336 -24.38314 -23.02254 -21.36265 -20.21140 -18.74112 -17.32163 -16.87099
-16.70437 -15.93342 -15.78118 -15.39363 -14.69733 -14.66373 -14.29286 -13.93878
-13.61260 -13.32744 -13.15270 -13.06850 -12.94342 -12.67916 -12.50613 -12.34794
-12.12099 -11.87050 -11.65723 -11.48437 -11.41496 -11.17086 -10.94825 -10.47140
-10.44752 -9.04357 -8.06514 -6.28867 1.37406 1.38320 1.45609 2.38633
2.97223 3.12939 3.43981 3.66353 3.93240 4.08244 4.27708 4.33361
4.40013 4.60369 4.75958 4.77578 4.78144 4.85949 4.88425 4.91267
4.95552 5.03575 5.10325 5.19307 5.24336 5.25767 5.44000 5.51748
5.54751 5.63995 5.78022 6.06938 6.11013 6.20158 6.37590 6.80676
7.00558 7.42699 8.89544
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.027430 B = 0.007728 C = 0.006493
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1020.520710 B = 3622.404320 C = 4311.584981
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.102 4.102
3 C 0.223 3.777
4 H -0.001 1.001
5 C -0.562 4.562
6 H 0.047 0.953
7 C 0.021 3.979
8 N -0.910 5.910
9 Si 0.947 3.053
10 H -0.273 1.273
11 H -0.282 1.282
12 H -0.276 1.276
13 N -0.673 5.673
14 C 0.088 3.912
15 C -0.084 4.084
16 C -0.118 4.118
17 C -0.145 4.145
18 C 0.050 3.950
19 O -0.409 6.409
20 C 0.063 3.937
21 H 0.030 0.970
22 H 0.042 0.958
23 H 0.060 0.940
24 H 0.059 0.941
25 H 0.027 0.973
26 H 0.262 0.738
27 H 0.327 0.673
28 H 0.057 0.943
29 H 0.007 0.993
30 H 0.062 0.938
31 H 0.057 0.943
32 H 0.060 0.940
33 H 0.102 0.898
34 H 0.069 0.931
35 H 0.075 0.925
36 H 0.096 0.904
37 H 0.050 0.950
38 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.478 8.197 8.475 13.452
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.141 4.141
3 C 0.114 3.886
4 H 0.017 0.983
5 C -0.601 4.601
6 H 0.065 0.935
7 C -0.179 4.179
8 N -0.549 5.549
9 Si 0.773 3.227
10 H -0.198 1.198
11 H -0.208 1.208
12 H -0.202 1.202
13 N -0.301 5.301
14 C -0.042 4.042
15 C -0.085 4.085
16 C -0.175 4.175
17 C -0.183 4.183
18 C -0.026 4.026
19 O -0.329 6.329
20 C -0.013 4.013
21 H 0.049 0.951
22 H 0.061 0.939
23 H 0.079 0.921
24 H 0.077 0.923
25 H 0.046 0.954
26 H 0.071 0.929
27 H 0.143 0.857
28 H 0.076 0.924
29 H 0.025 0.975
30 H 0.081 0.919
31 H 0.076 0.924
32 H 0.079 0.921
33 H 0.120 0.880
34 H 0.088 0.912
35 H 0.093 0.907
36 H 0.114 0.886
37 H 0.068 0.932
38 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -7.028 8.017 8.365 13.551
hybrid contribution 2.136 -0.023 -0.815 2.286
sum -4.892 7.995 7.550 12.035
Atomic orbital electron populations
1.21538 0.96242 0.99467 1.00733 1.21349 0.94502 0.98289 0.99936
1.18915 0.91279 0.91579 0.86846 0.98278 1.22156 0.94229 1.37919
1.05783 0.93451 1.25635 1.01984 0.94786 0.95471 1.69993 1.36462
1.38517 1.09890 0.85786 0.81269 0.78152 0.77468 1.19790 1.20770
1.20172 1.60831 1.54341 1.07002 1.07951 1.21685 0.97415 0.89006
0.96104 1.22087 0.97057 0.95270 0.94040 1.21592 0.93110 1.01590
1.01184 1.23350 1.03854 0.93711 0.97421 1.23525 0.94935 0.92250
0.91840 1.88335 1.67539 1.23829 1.53169 1.23167 0.98717 0.87407
0.92047 0.95126 0.93891 0.92131 0.92278 0.95382 0.92853 0.85653
0.92445 0.97500 0.91938 0.92350 0.92078 0.87951 0.91191 0.90683
0.88597 0.93193 0.90762
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.84 9.73 71.98 0.70 -4.14 16
2 C -0.10 -4.85 5.45 30.59 0.17 -4.69 16
3 C 0.22 10.95 1.98 44.17 0.09 11.04 16
4 H 0.00 -0.04 7.70 -2.39 -0.02 -0.06 16
5 C -0.56 -30.40 8.47 25.60 0.22 -30.18 16
6 H 0.05 2.55 7.73 -2.91 -0.02 2.52 16
7 C 0.02 1.18 5.29 84.65 0.45 1.63 16
8 N -0.91 -51.94 11.30 21.45 0.24 -51.70 16
9 Si 0.95 43.54 29.54 68.60 2.03 45.56 16
10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16
11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16
12 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16
13 N -0.67 -26.95 5.17 -495.45 -2.56 -29.51 16
14 C 0.09 3.16 4.39 86.30 0.38 3.54 16
15 C -0.08 -2.33 0.72 -50.92 -0.04 -2.37 16
16 C -0.12 -2.91 8.30 71.98 0.60 -2.31 16
17 C -0.15 -3.34 6.12 32.05 0.20 -3.15 16
18 C 0.05 1.09 7.48 72.65 0.54 1.63 16
19 O -0.41 -11.93 11.36 -148.98 -1.69 -13.63 16
20 C 0.06 1.86 6.18 72.45 0.45 2.31 16
21 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16
22 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16
23 H 0.06 2.21 7.88 -2.38 -0.02 2.19 16
24 H 0.06 3.19 5.97 -2.39 -0.01 3.17 16
25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16
26 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16
27 H 0.33 13.14 7.39 -89.70 -0.66 12.48 16
28 H 0.06 2.13 7.92 -2.39 -0.02 2.11 16
29 H 0.01 0.27 8.10 -2.39 -0.02 0.25 16
30 H 0.06 1.31 7.52 -2.38 -0.02 1.29 16
31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16
32 H 0.06 1.67 7.81 -2.39 -0.02 1.65 16
33 H 0.10 1.92 8.04 -2.39 -0.02 1.90 16
34 H 0.07 1.73 8.03 -2.39 -0.02 1.71 16
35 H 0.08 1.37 7.77 -2.39 -0.02 1.35 16
36 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16
37 H 0.05 1.64 7.54 -2.38 -0.02 1.63 16
38 H 0.07 2.10 7.84 -2.39 -0.02 2.08 16
Total: -1.00 -58.51 299.04 2.11 -56.40
By element:
Atomic # 1 Polarization: 19.20 SS G_CDS: 0.35 Total: 19.55 kcal
Atomic # 6 Polarization: -30.43 SS G_CDS: 3.75 Total: -26.69 kcal
Atomic # 7 Polarization: -78.89 SS G_CDS: -2.32 Total: -81.20 kcal
Atomic # 8 Polarization: -11.93 SS G_CDS: -1.69 Total: -13.63 kcal
Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal
Total: -58.51 2.11 -56.40 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397293837.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.215 kcal
(2) G-P(sol) polarization free energy of solvation -58.514 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.729 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.402 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.617 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds