Wall clock time and date at job start Sun Mar 29 2020 21:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47098 * 2 1 4 4 H 1.08999 * 109.47426 * 304.27132 * 3 2 1 5 5 C 1.50699 * 109.47347 * 184.26938 * 3 2 1 6 6 H 1.08003 * 119.99997 * 240.00289 * 5 3 2 7 7 C 1.37874 * 120.00155 * 60.00022 * 5 3 2 8 8 N 1.31517 * 119.99790 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00395 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46542 * 59.99932 * 9 7 5 11 11 H 1.48496 * 109.47297 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46855 * 300.00286 * 9 7 5 13 13 N 1.46904 * 109.47051 * 64.26885 * 3 2 1 14 14 C 1.46905 * 110.99871 * 205.90833 * 13 3 2 15 15 C 1.53001 * 109.46720 * 174.66637 * 14 13 3 16 16 C 1.52995 * 110.75104 * 297.97928 * 15 14 13 17 17 C 1.55311 * 110.84515 * 174.28428 * 15 14 13 18 18 C 1.54947 * 100.93922 * 207.67383 * 17 15 14 19 19 O 1.43647 * 105.13825 * 36.44950 * 18 17 15 20 20 C 1.43241 * 109.96866 * 335.56494 * 19 18 17 21 21 H 1.09005 * 109.47428 * 54.92239 * 1 2 3 22 22 H 1.08999 * 109.47422 * 174.92425 * 1 2 3 23 23 H 1.09005 * 109.47410 * 294.92298 * 1 2 3 24 24 H 1.09001 * 109.47294 * 240.00624 * 2 1 3 25 25 H 1.09000 * 109.47459 * 120.00031 * 2 1 3 26 26 H 0.96996 * 120.00033 * 180.02562 * 8 7 5 27 27 H 1.00896 * 111.00191 * 81.95904 * 13 3 2 28 28 H 1.08991 * 109.47361 * 54.66506 * 14 13 3 29 29 H 1.08998 * 109.46894 * 294.65955 * 14 13 3 30 30 H 1.09006 * 109.47279 * 182.02149 * 16 15 14 31 31 H 1.09003 * 109.47648 * 302.01666 * 16 15 14 32 32 H 1.09000 * 109.47486 * 62.02381 * 16 15 14 33 33 H 1.08997 * 111.12205 * 89.75515 * 17 15 14 34 34 H 1.09000 * 111.12302 * 325.59414 * 17 15 14 35 35 H 1.08994 * 110.31369 * 277.52737 * 18 17 15 36 36 H 1.08998 * 110.30557 * 155.35963 * 18 17 15 37 37 H 1.09007 * 109.82577 * 121.22553 * 20 19 18 38 38 H 1.08995 * 109.83526 * 242.11475 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6155 1.9780 -0.8492 5 6 3.5432 1.4439 -0.1058 6 1 4.1391 1.8917 0.6757 7 6 4.1578 0.8733 -1.2001 8 7 3.4321 0.3284 -2.1520 9 14 6.0212 0.8757 -1.3317 10 1 6.5999 0.1466 -0.1746 11 1 6.4293 0.2057 -2.5925 12 1 6.5156 2.2760 -1.3320 13 7 1.6362 2.1046 1.2477 14 6 1.5386 3.5589 1.0642 15 6 0.9897 4.1982 2.3413 16 6 -0.4198 3.6848 2.6420 17 6 1.0075 5.7476 2.2353 18 6 1.1389 6.1429 3.7278 19 8 1.9968 5.1462 4.3057 20 6 1.9346 3.9406 3.5347 21 1 -0.3634 0.5906 -0.8410 22 1 -0.3634 -1.0236 -0.0909 23 1 -0.3634 0.4331 0.9320 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8645 -0.0733 -2.9218 27 1 2.2696 1.8767 1.9993 28 1 0.8688 3.7760 0.2323 29 1 2.5271 3.9652 0.8504 30 1 -0.8041 4.1795 3.5341 31 1 -1.0733 3.9009 1.7968 32 1 -0.3863 2.6082 2.8095 33 1 0.0768 6.1229 1.8100 34 1 1.8671 6.0922 1.6605 35 1 0.1620 6.1273 4.2108 36 1 1.5912 7.1304 3.8191 37 1 2.9291 3.6831 3.1701 38 1 1.5442 3.1288 4.1485 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397293837.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:09 Heat of formation + Delta-G solvation = -83.617331 kcal Electronic energy + Delta-G solvation = -16699.443694 eV Core-core repulsion = 14154.248567 eV Total energy + Delta-G solvation = -2545.195126 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.82060 -37.98258 -35.51797 -33.78209 -32.30888 -30.45651 -28.43380 -27.50867 -25.84336 -24.38314 -23.02254 -21.36265 -20.21140 -18.74112 -17.32163 -16.87099 -16.70437 -15.93342 -15.78118 -15.39363 -14.69733 -14.66373 -14.29286 -13.93878 -13.61260 -13.32744 -13.15270 -13.06850 -12.94342 -12.67916 -12.50613 -12.34794 -12.12099 -11.87050 -11.65723 -11.48437 -11.41496 -11.17086 -10.94825 -10.47140 -10.44752 -9.04357 -8.06514 -6.28867 1.37406 1.38320 1.45609 2.38633 2.97223 3.12939 3.43981 3.66353 3.93240 4.08244 4.27708 4.33361 4.40013 4.60369 4.75958 4.77578 4.78144 4.85949 4.88425 4.91267 4.95552 5.03575 5.10325 5.19307 5.24336 5.25767 5.44000 5.51748 5.54751 5.63995 5.78022 6.06938 6.11013 6.20158 6.37590 6.80676 7.00558 7.42699 8.89544 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.007728 C = 0.006493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.520710 B = 3622.404320 C = 4311.584981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.102 4.102 3 C 0.223 3.777 4 H -0.001 1.001 5 C -0.562 4.562 6 H 0.047 0.953 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.947 3.053 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.276 1.276 13 N -0.673 5.673 14 C 0.088 3.912 15 C -0.084 4.084 16 C -0.118 4.118 17 C -0.145 4.145 18 C 0.050 3.950 19 O -0.409 6.409 20 C 0.063 3.937 21 H 0.030 0.970 22 H 0.042 0.958 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.027 0.973 26 H 0.262 0.738 27 H 0.327 0.673 28 H 0.057 0.943 29 H 0.007 0.993 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.478 8.197 8.475 13.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 C 0.114 3.886 4 H 0.017 0.983 5 C -0.601 4.601 6 H 0.065 0.935 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.773 3.227 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.202 1.202 13 N -0.301 5.301 14 C -0.042 4.042 15 C -0.085 4.085 16 C -0.175 4.175 17 C -0.183 4.183 18 C -0.026 4.026 19 O -0.329 6.329 20 C -0.013 4.013 21 H 0.049 0.951 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.143 0.857 28 H 0.076 0.924 29 H 0.025 0.975 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.068 0.932 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.028 8.017 8.365 13.551 hybrid contribution 2.136 -0.023 -0.815 2.286 sum -4.892 7.995 7.550 12.035 Atomic orbital electron populations 1.21538 0.96242 0.99467 1.00733 1.21349 0.94502 0.98289 0.99936 1.18915 0.91279 0.91579 0.86846 0.98278 1.22156 0.94229 1.37919 1.05783 0.93451 1.25635 1.01984 0.94786 0.95471 1.69993 1.36462 1.38517 1.09890 0.85786 0.81269 0.78152 0.77468 1.19790 1.20770 1.20172 1.60831 1.54341 1.07002 1.07951 1.21685 0.97415 0.89006 0.96104 1.22087 0.97057 0.95270 0.94040 1.21592 0.93110 1.01590 1.01184 1.23350 1.03854 0.93711 0.97421 1.23525 0.94935 0.92250 0.91840 1.88335 1.67539 1.23829 1.53169 1.23167 0.98717 0.87407 0.92047 0.95126 0.93891 0.92131 0.92278 0.95382 0.92853 0.85653 0.92445 0.97500 0.91938 0.92350 0.92078 0.87951 0.91191 0.90683 0.88597 0.93193 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.84 9.73 71.98 0.70 -4.14 16 2 C -0.10 -4.85 5.45 30.59 0.17 -4.69 16 3 C 0.22 10.95 1.98 44.17 0.09 11.04 16 4 H 0.00 -0.04 7.70 -2.39 -0.02 -0.06 16 5 C -0.56 -30.40 8.47 25.60 0.22 -30.18 16 6 H 0.05 2.55 7.73 -2.91 -0.02 2.52 16 7 C 0.02 1.18 5.29 84.65 0.45 1.63 16 8 N -0.91 -51.94 11.30 21.45 0.24 -51.70 16 9 Si 0.95 43.54 29.54 68.60 2.03 45.56 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 13 N -0.67 -26.95 5.17 -495.45 -2.56 -29.51 16 14 C 0.09 3.16 4.39 86.30 0.38 3.54 16 15 C -0.08 -2.33 0.72 -50.92 -0.04 -2.37 16 16 C -0.12 -2.91 8.30 71.98 0.60 -2.31 16 17 C -0.15 -3.34 6.12 32.05 0.20 -3.15 16 18 C 0.05 1.09 7.48 72.65 0.54 1.63 16 19 O -0.41 -11.93 11.36 -148.98 -1.69 -13.63 16 20 C 0.06 1.86 6.18 72.45 0.45 2.31 16 21 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 22 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.06 2.21 7.88 -2.38 -0.02 2.19 16 24 H 0.06 3.19 5.97 -2.39 -0.01 3.17 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 27 H 0.33 13.14 7.39 -89.70 -0.66 12.48 16 28 H 0.06 2.13 7.92 -2.39 -0.02 2.11 16 29 H 0.01 0.27 8.10 -2.39 -0.02 0.25 16 30 H 0.06 1.31 7.52 -2.38 -0.02 1.29 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.67 7.81 -2.39 -0.02 1.65 16 33 H 0.10 1.92 8.04 -2.39 -0.02 1.90 16 34 H 0.07 1.73 8.03 -2.39 -0.02 1.71 16 35 H 0.08 1.37 7.77 -2.39 -0.02 1.35 16 36 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 1.64 7.54 -2.38 -0.02 1.63 16 38 H 0.07 2.10 7.84 -2.39 -0.02 2.08 16 Total: -1.00 -58.51 299.04 2.11 -56.40 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.35 Total: 19.55 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 3.75 Total: -26.69 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -2.32 Total: -81.20 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -1.69 Total: -13.63 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -58.51 2.11 -56.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397293837.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.215 kcal (2) G-P(sol) polarization free energy of solvation -58.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds