Wall clock time and date at job start Sun Mar 29 2020 21:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46774 * 2 1 4 4 H 1.09006 * 109.46707 * 185.16024 * 3 2 1 5 5 C 1.50691 * 109.47302 * 305.16372 * 3 2 1 6 6 H 1.08004 * 120.00276 * 120.00519 * 5 3 2 7 7 C 1.37886 * 119.99856 * 299.99959 * 5 3 2 8 8 N 1.31510 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99607 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47131 * 90.00333 * 9 7 5 11 11 H 1.48506 * 109.46955 * 210.00251 * 9 7 5 12 12 H 1.48502 * 109.47372 * 329.99844 * 9 7 5 13 13 N 1.46904 * 109.47036 * 65.16780 * 3 2 1 14 14 C 1.46895 * 111.00243 * 85.99686 * 13 3 2 15 15 C 1.53003 * 109.47148 * 174.49428 * 14 13 3 16 16 C 1.52996 * 110.82927 * 303.64957 * 15 14 13 17 17 C 1.54807 * 110.90614 * 180.02562 * 15 14 13 18 18 C 1.54105 * 104.18904 * 220.92080 * 17 15 14 19 19 O 1.43750 * 107.28735 * 357.97066 * 18 17 15 20 20 C 1.44373 * 106.97672 * 26.51698 * 19 18 17 21 21 H 1.09009 * 109.47108 * 294.85170 * 1 2 3 22 22 H 1.09001 * 109.47653 * 54.84932 * 1 2 3 23 23 H 1.08997 * 109.47304 * 174.85419 * 1 2 3 24 24 H 1.08995 * 109.46803 * 240.00160 * 2 1 3 25 25 H 1.09003 * 109.46979 * 120.00188 * 2 1 3 26 26 H 0.97001 * 119.99548 * 180.02562 * 8 7 5 27 27 H 1.00902 * 110.99390 * 322.04039 * 13 3 2 28 28 H 1.09005 * 109.46972 * 54.49550 * 14 13 3 29 29 H 1.08998 * 109.47505 * 294.49827 * 14 13 3 30 30 H 1.09004 * 109.47341 * 296.34809 * 16 15 14 31 31 H 1.09004 * 109.47335 * 56.35061 * 16 15 14 32 32 H 1.09001 * 109.47351 * 176.35394 * 16 15 14 33 33 H 1.09002 * 110.48755 * 102.24943 * 17 15 14 34 34 H 1.09001 * 110.49214 * 339.59854 * 17 15 14 35 35 H 1.09001 * 109.87985 * 117.39399 * 18 17 15 36 36 H 1.08999 * 109.88152 * 238.55154 * 18 17 15 37 37 H 1.08997 * 110.61984 * 78.43656 * 20 19 18 38 38 H 1.08998 * 110.61939 * 201.43716 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1261 1.4440 -0.0924 5 6 1.4359 2.1889 -1.1614 6 1 0.8268 3.0629 -0.9838 7 6 1.6610 1.7560 -2.4511 8 7 2.4024 0.6916 -2.6675 9 14 0.9128 2.6817 -3.8908 10 1 1.8550 3.7359 -4.3449 11 1 0.6532 1.7360 -5.0061 12 1 -0.3645 3.3087 -3.4662 13 7 1.6547 2.0981 1.2570 14 6 2.6445 1.8386 2.3109 15 6 2.2833 2.6456 3.5597 16 6 2.1822 4.1369 3.2333 17 6 3.3075 2.3968 4.6935 18 6 2.4447 2.2960 5.9664 19 8 1.0796 2.5207 5.5761 20 6 0.9666 2.1267 4.1918 21 1 -0.3634 0.4319 0.9326 22 1 -0.3634 0.5916 -0.8402 23 1 -0.3634 -1.0235 -0.0922 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.5610 0.3874 -3.5747 27 1 0.7327 1.8091 1.5476 28 1 3.6337 2.1340 1.9610 29 1 2.6472 0.7759 2.5533 30 1 3.1567 4.5056 2.9129 31 1 1.4566 4.2855 2.4335 32 1 1.8614 4.6822 4.1209 33 1 4.0031 3.2326 4.7695 34 1 3.8465 1.4648 4.5232 35 1 2.5462 1.3034 6.4053 36 1 2.7543 3.0547 6.6852 37 1 0.9007 1.0422 4.1055 38 1 0.1037 2.6030 3.7263 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397293838.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:11 Heat of formation + Delta-G solvation = -61.431523 kcal Electronic energy + Delta-G solvation = -16721.733173 eV Core-core repulsion = 14177.500095 eV Total energy + Delta-G solvation = -2544.233077 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.67007 -36.56154 -34.07493 -31.88339 -30.33224 -29.28386 -26.71149 -26.12776 -24.15022 -23.26796 -22.10667 -19.32212 -19.04195 -16.38075 -16.03484 -15.49777 -15.01158 -14.71893 -14.43929 -13.91822 -13.44643 -12.89867 -12.77129 -12.62676 -12.26847 -12.00697 -11.69626 -11.48079 -11.36048 -10.99325 -10.86983 -10.53728 -10.51623 -10.44255 -10.31208 -9.94039 -9.69443 -9.56237 -9.47109 -8.97434 -8.33825 -7.20211 -5.97173 -3.98520 3.32977 3.39670 3.43335 4.06357 4.44250 4.66631 4.90772 4.98387 5.19007 5.32784 5.34627 5.55218 5.59378 5.75977 5.82034 5.90189 6.01035 6.04239 6.18072 6.29436 6.32093 6.37103 6.40587 6.50058 6.57721 6.79098 6.88910 6.97172 7.27707 7.29162 7.51538 7.69801 7.89610 8.29001 8.54437 8.62792 9.07281 9.65175 11.09896 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042532 B = 0.006474 C = 0.006224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.168516 B = 4323.868615 C = 4497.911000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.487 4.487 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.681 5.681 14 C 0.075 3.925 15 C -0.087 4.087 16 C -0.123 4.123 17 C -0.150 4.150 18 C 0.049 3.951 19 O -0.382 6.382 20 C 0.055 3.945 21 H 0.026 0.974 22 H 0.069 0.931 23 H 0.023 0.977 24 H 0.092 0.908 25 H 0.009 0.991 26 H 0.259 0.741 27 H 0.325 0.675 28 H 0.067 0.933 29 H 0.018 0.982 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.298 1.408 12.163 12.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.049 0.951 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.311 5.311 14 C -0.055 4.055 15 C -0.088 4.088 16 C -0.180 4.180 17 C -0.188 4.188 18 C -0.028 4.028 19 O -0.301 6.301 20 C -0.022 4.022 21 H 0.045 0.955 22 H 0.088 0.912 23 H 0.042 0.958 24 H 0.111 0.889 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.143 0.857 28 H 0.086 0.914 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.476 1.994 11.960 12.134 hybrid contribution -0.248 -0.765 -0.771 1.114 sum 0.228 1.229 11.189 11.258 Atomic orbital electron populations 1.21599 0.97680 0.98679 1.00758 1.22107 0.95016 1.01201 1.00176 1.19210 0.95884 0.88527 0.85607 0.95080 1.21071 1.30443 1.11425 0.89661 0.92014 1.24918 0.95591 0.95153 0.98750 1.69882 1.39146 1.23996 1.20645 0.86578 0.79608 0.79525 0.82159 1.20853 1.21500 1.19944 1.60797 1.03656 1.63037 1.03636 1.21834 0.97608 0.95234 0.90826 1.22146 0.94057 0.97925 0.94692 1.21598 1.02571 0.92641 1.01164 1.23049 0.98618 1.02711 0.94426 1.23092 0.82388 1.00423 0.96906 1.88825 1.27154 1.86657 1.27436 1.23674 0.98692 0.98815 0.80971 0.95464 0.91177 0.95802 0.88942 0.97214 0.93155 0.85746 0.91438 0.96430 0.92994 0.90447 0.93656 0.90511 0.90814 0.92929 0.90373 0.92621 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.40 37.16 0.35 -2.38 16 2 C -0.15 -3.35 5.51 -26.73 -0.15 -3.50 16 3 C 0.22 5.19 2.33 -68.86 -0.16 5.03 16 4 H 0.03 0.84 7.70 -51.93 -0.40 0.44 16 5 C -0.49 -12.94 7.25 -34.44 -0.25 -13.19 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.52 5.28 -17.82 -0.09 1.43 16 8 N -0.90 -25.12 11.38 55.43 0.63 -24.49 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.68 -13.70 5.33 -107.95 -0.57 -14.28 16 14 C 0.08 1.30 4.43 -3.83 -0.02 1.28 16 15 C -0.09 -1.27 0.77 -152.50 -0.12 -1.38 16 16 C -0.12 -1.80 8.38 37.16 0.31 -1.49 16 17 C -0.15 -1.83 6.18 -25.20 -0.16 -1.98 16 18 C 0.05 0.58 7.70 37.73 0.29 0.87 16 19 O -0.38 -5.61 11.51 -35.23 -0.41 -6.01 16 20 C 0.05 0.79 5.96 38.21 0.23 1.02 16 21 H 0.03 0.51 6.63 -51.92 -0.34 0.16 16 22 H 0.07 1.62 6.85 -51.93 -0.36 1.26 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.09 2.41 6.22 -51.93 -0.32 2.09 16 25 H 0.01 0.20 7.51 -51.93 -0.39 -0.19 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.32 6.28 6.05 -39.29 -0.24 6.04 16 28 H 0.07 1.22 7.92 -51.93 -0.41 0.81 16 29 H 0.02 0.31 7.50 -51.93 -0.39 -0.08 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.27 7.49 -51.93 -0.39 0.88 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.86 7.87 -51.93 -0.41 0.45 16 34 H 0.07 0.86 7.86 -51.93 -0.41 0.45 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.79 8.01 -51.93 -0.42 0.38 16 38 H 0.10 1.37 8.06 -51.93 -0.42 0.95 16 LS Contribution 294.76 15.07 4.44 4.44 Total: -1.00 -27.41 294.76 -7.24 -34.66 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.55 Total: 3.81 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 0.24 Total: -14.30 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.06 Total: -38.76 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.41 Total: -6.01 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.41 -7.24 -34.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397293838.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.776 kcal (2) G-P(sol) polarization free energy of solvation -27.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds