Wall clock time and date at job start Sun Mar 29 2020 21:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46774 * 2 1 4 4 H 1.09006 * 109.46707 * 185.16024 * 3 2 1 5 5 C 1.50691 * 109.47302 * 305.16372 * 3 2 1 6 6 H 1.08004 * 120.00276 * 120.00519 * 5 3 2 7 7 C 1.37886 * 119.99856 * 299.99959 * 5 3 2 8 8 N 1.31510 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99607 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47131 * 90.00333 * 9 7 5 11 11 H 1.48506 * 109.46955 * 210.00251 * 9 7 5 12 12 H 1.48502 * 109.47372 * 329.99844 * 9 7 5 13 13 N 1.46904 * 109.47036 * 65.16780 * 3 2 1 14 14 C 1.46895 * 111.00243 * 85.99686 * 13 3 2 15 15 C 1.53003 * 109.47148 * 174.49428 * 14 13 3 16 16 C 1.52996 * 110.82927 * 303.64957 * 15 14 13 17 17 C 1.54807 * 110.90614 * 180.02562 * 15 14 13 18 18 C 1.54105 * 104.18904 * 220.92080 * 17 15 14 19 19 O 1.43750 * 107.28735 * 357.97066 * 18 17 15 20 20 C 1.44373 * 106.97672 * 26.51698 * 19 18 17 21 21 H 1.09009 * 109.47108 * 294.85170 * 1 2 3 22 22 H 1.09001 * 109.47653 * 54.84932 * 1 2 3 23 23 H 1.08997 * 109.47304 * 174.85419 * 1 2 3 24 24 H 1.08995 * 109.46803 * 240.00160 * 2 1 3 25 25 H 1.09003 * 109.46979 * 120.00188 * 2 1 3 26 26 H 0.97001 * 119.99548 * 180.02562 * 8 7 5 27 27 H 1.00902 * 110.99390 * 322.04039 * 13 3 2 28 28 H 1.09005 * 109.46972 * 54.49550 * 14 13 3 29 29 H 1.08998 * 109.47505 * 294.49827 * 14 13 3 30 30 H 1.09004 * 109.47341 * 296.34809 * 16 15 14 31 31 H 1.09004 * 109.47335 * 56.35061 * 16 15 14 32 32 H 1.09001 * 109.47351 * 176.35394 * 16 15 14 33 33 H 1.09002 * 110.48755 * 102.24943 * 17 15 14 34 34 H 1.09001 * 110.49214 * 339.59854 * 17 15 14 35 35 H 1.09001 * 109.87985 * 117.39399 * 18 17 15 36 36 H 1.08999 * 109.88152 * 238.55154 * 18 17 15 37 37 H 1.08997 * 110.61984 * 78.43656 * 20 19 18 38 38 H 1.08998 * 110.61939 * 201.43716 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1261 1.4440 -0.0924 5 6 1.4359 2.1889 -1.1614 6 1 0.8268 3.0629 -0.9838 7 6 1.6610 1.7560 -2.4511 8 7 2.4024 0.6916 -2.6675 9 14 0.9128 2.6817 -3.8908 10 1 1.8550 3.7359 -4.3449 11 1 0.6532 1.7360 -5.0061 12 1 -0.3645 3.3087 -3.4662 13 7 1.6547 2.0981 1.2570 14 6 2.6445 1.8386 2.3109 15 6 2.2833 2.6456 3.5597 16 6 2.1822 4.1369 3.2333 17 6 3.3075 2.3968 4.6935 18 6 2.4447 2.2960 5.9664 19 8 1.0796 2.5207 5.5761 20 6 0.9666 2.1267 4.1918 21 1 -0.3634 0.4319 0.9326 22 1 -0.3634 0.5916 -0.8402 23 1 -0.3634 -1.0235 -0.0922 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.5610 0.3874 -3.5747 27 1 0.7327 1.8091 1.5476 28 1 3.6337 2.1340 1.9610 29 1 2.6472 0.7759 2.5533 30 1 3.1567 4.5056 2.9129 31 1 1.4566 4.2855 2.4335 32 1 1.8614 4.6822 4.1209 33 1 4.0031 3.2326 4.7695 34 1 3.8465 1.4648 4.5232 35 1 2.5462 1.3034 6.4053 36 1 2.7543 3.0547 6.6852 37 1 0.9007 1.0422 4.1055 38 1 0.1037 2.6030 3.7263 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397293838.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:11 Heat of formation + Delta-G solvation = -78.450314 kcal Electronic energy + Delta-G solvation = -16722.471163 eV Core-core repulsion = 14177.500095 eV Total energy + Delta-G solvation = -2544.971068 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.79769 -38.23907 -35.53262 -33.72021 -31.85350 -30.45777 -28.43075 -27.46042 -25.73094 -25.02093 -23.17554 -21.15368 -20.27793 -18.18248 -17.14518 -16.97949 -16.60014 -16.21242 -15.78039 -15.33801 -14.99689 -14.49813 -14.29275 -14.14888 -13.70888 -13.51948 -13.08198 -12.83729 -12.77351 -12.67921 -12.42742 -12.35154 -12.03974 -11.79030 -11.59123 -11.48970 -11.45354 -11.31002 -10.90909 -10.52680 -10.41316 -8.87887 -8.03849 -6.11676 1.43722 1.45575 1.54872 2.46941 3.01294 3.25305 3.52169 3.72367 3.88317 4.05383 4.26303 4.32485 4.38039 4.56580 4.59023 4.68226 4.71802 4.80486 4.84381 4.85544 4.89887 4.98207 5.11240 5.13002 5.23122 5.27941 5.40006 5.43957 5.58150 5.71748 5.76230 5.86112 5.94004 6.34636 6.70926 6.88801 7.01774 7.56158 9.01523 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042532 B = 0.006474 C = 0.006224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.168516 B = 4323.868615 C = 4497.911000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.139 4.139 3 C 0.222 3.778 4 H -0.004 1.004 5 C -0.497 4.497 6 H 0.053 0.947 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.950 3.050 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.269 1.269 13 N -0.680 5.680 14 C 0.080 3.920 15 C -0.085 4.085 16 C -0.117 4.117 17 C -0.145 4.145 18 C 0.046 3.954 19 O -0.397 6.397 20 C 0.057 3.943 21 H 0.049 0.951 22 H 0.045 0.955 23 H 0.041 0.959 24 H 0.060 0.940 25 H 0.024 0.976 26 H 0.258 0.742 27 H 0.331 0.669 28 H 0.054 0.946 29 H 0.020 0.980 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.154 1.689 13.456 13.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.179 4.179 3 C 0.113 3.887 4 H 0.014 0.986 5 C -0.536 4.536 6 H 0.071 0.929 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.776 3.224 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.193 1.193 13 N -0.311 5.311 14 C -0.050 4.050 15 C -0.086 4.086 16 C -0.174 4.174 17 C -0.183 4.183 18 C -0.031 4.031 19 O -0.316 6.316 20 C -0.019 4.019 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.043 0.957 26 H 0.067 0.933 27 H 0.150 0.850 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.019 2.283 13.273 13.468 hybrid contribution -0.066 -0.851 -1.118 1.406 sum -0.047 1.431 12.156 12.240 Atomic orbital electron populations 1.21485 0.95915 0.99578 1.00898 1.21958 0.96519 1.00117 0.99274 1.18950 0.93496 0.89341 0.86922 0.98638 1.21301 1.30182 1.11258 0.90809 0.92857 1.25584 0.96024 0.95873 1.01034 1.70012 1.40170 1.25140 1.20943 0.85681 0.78982 0.78350 0.79342 1.20739 1.21281 1.19337 1.60659 1.04610 1.62620 1.03229 1.21823 0.96210 0.95909 0.91070 1.22068 0.95349 0.97133 0.94026 1.21529 1.01933 0.93038 1.00949 1.23037 0.98257 1.03576 0.93437 1.23282 0.80937 1.01949 0.96920 1.88813 1.28794 1.86833 1.27192 1.23616 0.98298 0.98867 0.81150 0.93202 0.93548 0.94036 0.92136 0.95730 0.93300 0.85022 0.92738 0.96188 0.93060 0.92470 0.92451 0.89301 0.90231 0.91638 0.88496 0.92414 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 9.40 71.98 0.68 -4.29 16 2 C -0.14 -6.40 5.51 30.60 0.17 -6.23 16 3 C 0.22 10.81 2.33 44.17 0.10 10.91 16 4 H 0.00 -0.24 7.70 -2.38 -0.02 -0.26 16 5 C -0.50 -26.65 7.25 25.60 0.19 -26.47 16 6 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 7 C 0.01 0.70 5.28 84.66 0.45 1.14 16 8 N -0.92 -52.46 11.38 21.45 0.24 -52.22 16 9 Si 0.95 43.62 29.54 68.60 2.03 45.64 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 N -0.68 -27.18 5.33 -495.44 -2.64 -29.82 16 14 C 0.08 2.69 4.43 86.31 0.38 3.07 16 15 C -0.09 -2.32 0.77 -50.88 -0.04 -2.36 16 16 C -0.12 -3.30 8.38 71.98 0.60 -2.69 16 17 C -0.14 -3.16 6.18 31.58 0.20 -2.97 16 18 C 0.05 0.94 7.70 72.36 0.56 1.50 16 19 O -0.40 -10.69 11.51 -148.98 -1.71 -12.40 16 20 C 0.06 1.53 5.96 72.66 0.43 1.97 16 21 H 0.05 1.78 6.63 -2.38 -0.02 1.77 16 22 H 0.05 2.11 6.85 -2.39 -0.02 2.09 16 23 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.06 3.20 6.22 -2.39 -0.01 3.18 16 25 H 0.02 1.02 7.51 -2.39 -0.02 1.01 16 26 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 27 H 0.33 12.46 6.05 -89.69 -0.54 11.92 16 28 H 0.05 1.97 7.92 -2.38 -0.02 1.95 16 29 H 0.02 0.67 7.50 -2.39 -0.02 0.65 16 30 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.06 1.83 7.49 -2.38 -0.02 1.81 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.73 7.87 -2.39 -0.02 1.72 16 34 H 0.08 1.65 7.86 -2.39 -0.02 1.64 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.52 8.01 -2.39 -0.02 1.50 16 38 H 0.09 2.51 8.06 -2.39 -0.02 2.49 16 Total: -1.00 -58.15 294.76 2.11 -56.04 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.47 Total: 19.16 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 3.71 Total: -26.41 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -2.39 Total: -82.04 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -1.71 Total: -12.40 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -58.15 2.11 -56.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397293838.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.406 kcal (2) G-P(sol) polarization free energy of solvation -58.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds