Wall clock time and date at job start Sun Mar 29 2020 21:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46892 * 2 1 4 4 H 1.08998 * 109.46666 * 185.43752 * 3 2 1 5 5 C 1.50706 * 109.46926 * 305.43215 * 3 2 1 6 6 H 1.07998 * 119.99525 * 120.00091 * 5 3 2 7 7 C 1.37875 * 119.99699 * 300.00439 * 5 3 2 8 8 N 1.31514 * 120.00217 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99645 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47008 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47577 * 119.99731 * 9 7 5 12 12 H 1.48504 * 109.46809 * 239.99664 * 9 7 5 13 13 N 1.46897 * 109.47361 * 65.43375 * 3 2 1 14 14 C 1.46898 * 111.00284 * 86.77832 * 13 3 2 15 15 C 1.52999 * 109.47207 * 174.82315 * 14 13 3 16 16 C 1.52995 * 110.75036 * 59.30650 * 15 14 13 17 17 C 1.55308 * 110.84303 * 182.77434 * 15 14 13 18 18 C 1.55215 * 100.82248 * 152.18263 * 17 15 14 19 19 O 1.43639 * 105.25849 * 323.81571 * 18 17 15 20 20 C 1.43234 * 109.97643 * 24.28515 * 19 18 17 21 21 H 1.09000 * 109.47199 * 63.23203 * 1 2 3 22 22 H 1.09001 * 109.47128 * 183.23447 * 1 2 3 23 23 H 1.08997 * 109.47272 * 303.23052 * 1 2 3 24 24 H 1.08993 * 109.47253 * 239.99459 * 2 1 3 25 25 H 1.08999 * 109.47032 * 119.99258 * 2 1 3 26 26 H 0.97005 * 119.99808 * 180.02562 * 8 7 5 27 27 H 1.00908 * 111.00017 * 322.82634 * 13 3 2 28 28 H 1.08997 * 109.47394 * 294.83288 * 14 13 3 29 29 H 1.09002 * 109.46766 * 54.82646 * 14 13 3 30 30 H 1.09002 * 109.47252 * 60.69585 * 16 15 14 31 31 H 1.08999 * 109.47221 * 180.70223 * 16 15 14 32 32 H 1.09001 * 109.47142 * 300.69832 * 16 15 14 33 33 H 1.08999 * 111.12601 * 270.24044 * 17 15 14 34 34 H 1.08992 * 111.12981 * 34.41061 * 17 15 14 35 35 H 1.08995 * 110.36734 * 204.79636 * 18 17 15 36 36 H 1.08999 * 110.20849 * 82.75015 * 18 17 15 37 37 H 1.09000 * 109.83482 * 238.77754 * 20 19 18 38 38 H 1.08996 * 109.83713 * 117.80127 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1256 1.4441 -0.0974 5 6 1.4307 2.1907 -1.1577 6 1 0.8224 3.0643 -0.9759 7 6 1.6500 1.7597 -2.4489 8 7 2.3912 0.6962 -2.6703 9 14 0.8955 2.6875 -3.8840 10 1 0.1114 3.8397 -3.3712 11 1 1.9745 3.1808 -4.7770 12 1 0.0000 1.7792 -4.6446 13 7 1.6603 2.0962 1.2596 14 6 2.6640 1.8505 2.3036 15 6 2.3021 2.6494 3.5573 16 6 0.9203 2.2469 4.0764 17 6 3.3811 2.4673 4.6593 18 6 3.2408 3.8079 5.4289 19 8 2.9550 4.7930 4.4233 20 6 2.3639 4.1666 3.2788 21 1 -0.3633 0.4628 -0.9175 22 1 -0.3633 -1.0260 0.0580 23 1 -0.3634 0.5631 0.8596 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 2.5458 0.3932 -3.5787 27 1 0.7448 1.7971 1.5606 28 1 2.6858 0.7875 2.5438 29 1 3.6451 2.1620 1.9450 30 1 0.9237 1.1880 4.3352 31 1 0.6785 2.8364 4.9607 32 1 0.1742 2.4294 3.3029 33 1 3.1487 1.6167 5.3000 34 1 4.3751 2.3684 4.2234 35 1 4.1714 4.0500 5.9420 36 1 2.4200 3.7477 6.1436 37 1 2.9753 4.3560 2.3965 38 1 1.3576 4.5552 3.1230 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397293841.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:13 Heat of formation + Delta-G solvation = -60.670554 kcal Electronic energy + Delta-G solvation = -16713.540726 eV Core-core repulsion = 14169.340647 eV Total energy + Delta-G solvation = -2544.200079 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.64143 -36.59087 -34.11608 -31.88247 -30.34603 -29.17987 -26.76332 -26.30480 -24.07992 -23.22682 -22.08315 -19.37611 -19.00892 -16.41993 -16.06674 -15.47263 -14.86678 -14.74037 -14.34268 -13.75295 -13.46412 -13.15679 -12.83313 -12.64651 -12.31155 -12.14248 -11.88915 -11.39536 -11.27294 -11.02673 -10.88561 -10.57758 -10.50468 -10.46202 -10.36374 -9.93894 -9.71212 -9.55005 -9.26129 -8.95208 -8.33952 -7.21448 -5.96832 -3.98163 3.31978 3.40390 3.45432 4.10780 4.44300 4.58463 4.86500 5.04341 5.25881 5.33567 5.35222 5.44081 5.59007 5.69650 5.78179 5.97185 6.02852 6.05483 6.12521 6.22351 6.31122 6.32882 6.37921 6.44137 6.54885 6.59909 6.88404 7.22221 7.27017 7.28718 7.48755 7.69858 7.90431 8.29040 8.55080 8.62608 9.08092 9.65805 11.10307 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036857 B = 0.006753 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.508490 B = 4145.411935 C = 4473.444954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.684 5.684 14 C 0.076 3.924 15 C -0.090 4.090 16 C -0.138 4.138 17 C -0.149 4.149 18 C 0.054 3.946 19 O -0.393 6.393 20 C 0.072 3.928 21 H 0.065 0.935 22 H 0.021 0.979 23 H 0.030 0.970 24 H 0.092 0.908 25 H 0.009 0.991 26 H 0.258 0.742 27 H 0.326 0.674 28 H 0.020 0.980 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 0.988 12.776 12.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.525 4.525 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.315 5.315 14 C -0.055 4.055 15 C -0.090 4.090 16 C -0.195 4.195 17 C -0.187 4.187 18 C -0.023 4.023 19 O -0.313 6.313 20 C -0.004 4.004 21 H 0.084 0.916 22 H 0.040 0.960 23 H 0.049 0.951 24 H 0.110 0.890 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.146 0.854 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.011 1.721 12.446 12.564 hybrid contribution -0.572 -0.909 -0.682 1.273 sum -0.582 0.811 11.764 11.806 Atomic orbital electron populations 1.21553 0.97691 0.97812 1.01324 1.22101 0.94999 1.01177 1.00162 1.19208 0.95928 0.88579 0.85579 0.95067 1.21118 1.30318 1.11422 0.89666 0.91964 1.24916 0.95593 0.95177 0.98744 1.69894 1.39245 1.24164 1.20413 0.86533 0.78983 0.79907 0.82551 1.19748 1.21212 1.21282 1.60858 1.03737 1.63194 1.03731 1.21833 0.97258 0.95772 0.90588 1.22126 0.95347 0.96161 0.95406 1.21805 0.96021 1.00746 1.00917 1.23379 0.99848 0.97996 0.97487 1.23308 0.99957 0.87653 0.91366 1.88359 1.82447 1.33117 1.27375 1.23144 0.98578 0.90582 0.88121 0.91625 0.95963 0.95143 0.88958 0.97202 0.93217 0.85443 0.96183 0.91488 0.92784 0.92924 0.91400 0.90286 0.90351 0.90418 0.92771 0.90284 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.39 37.16 0.35 -2.31 16 2 C -0.14 -3.34 5.51 -26.73 -0.15 -3.49 16 3 C 0.21 5.20 2.34 -68.86 -0.16 5.04 16 4 H 0.03 0.84 7.69 -51.93 -0.40 0.45 16 5 C -0.49 -13.00 7.40 -34.44 -0.25 -13.26 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.52 5.25 -17.82 -0.09 1.43 16 8 N -0.90 -25.21 11.38 55.43 0.63 -24.58 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.68 -13.83 5.90 -107.95 -0.64 -14.47 16 14 C 0.08 1.31 4.40 -3.83 -0.02 1.29 16 15 C -0.09 -1.29 0.72 -152.56 -0.11 -1.40 16 16 C -0.14 -1.78 8.09 37.16 0.30 -1.48 16 17 C -0.15 -1.80 6.14 -24.33 -0.15 -1.95 16 18 C 0.05 0.65 7.49 38.33 0.29 0.94 16 19 O -0.39 -6.13 11.36 -35.23 -0.40 -6.53 16 20 C 0.07 1.13 6.77 37.88 0.26 1.39 16 21 H 0.06 1.52 7.15 -51.93 -0.37 1.15 16 22 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.03 0.58 6.34 -51.93 -0.33 0.25 16 24 H 0.09 2.41 6.24 -51.93 -0.32 2.08 16 25 H 0.01 0.20 7.56 -51.93 -0.39 -0.19 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.33 6.31 4.87 -39.29 -0.19 6.12 16 28 H 0.02 0.35 7.59 -51.93 -0.39 -0.05 16 29 H 0.07 1.23 7.90 -51.93 -0.41 0.82 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.62 7.59 -51.93 -0.39 0.22 16 32 H 0.07 0.94 6.77 -51.93 -0.35 0.59 16 33 H 0.08 0.83 8.03 -51.93 -0.42 0.41 16 34 H 0.08 0.95 8.04 -51.93 -0.42 0.54 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.59 7.82 -51.93 -0.41 0.18 16 37 H 0.08 1.37 7.80 -51.93 -0.40 0.97 16 38 H 0.07 1.09 7.84 -51.93 -0.41 0.68 16 LS Contribution 292.74 15.07 4.41 4.41 Total: -1.00 -27.71 292.74 -7.18 -34.89 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.42 Total: 3.81 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 0.26 Total: -13.80 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: -0.01 Total: -39.05 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.40 Total: -6.53 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.71 -7.18 -34.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397293841.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.785 kcal (2) G-P(sol) polarization free energy of solvation -27.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds