Wall clock time and date at job start Sun Mar 29 2020 21:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46892 * 2 1 4 4 H 1.08998 * 109.46666 * 185.43752 * 3 2 1 5 5 C 1.50706 * 109.46926 * 305.43215 * 3 2 1 6 6 H 1.07998 * 119.99525 * 120.00091 * 5 3 2 7 7 C 1.37875 * 119.99699 * 300.00439 * 5 3 2 8 8 N 1.31514 * 120.00217 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99645 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47008 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47577 * 119.99731 * 9 7 5 12 12 H 1.48504 * 109.46809 * 239.99664 * 9 7 5 13 13 N 1.46897 * 109.47361 * 65.43375 * 3 2 1 14 14 C 1.46898 * 111.00284 * 86.77832 * 13 3 2 15 15 C 1.52999 * 109.47207 * 174.82315 * 14 13 3 16 16 C 1.52995 * 110.75036 * 59.30650 * 15 14 13 17 17 C 1.55308 * 110.84303 * 182.77434 * 15 14 13 18 18 C 1.55215 * 100.82248 * 152.18263 * 17 15 14 19 19 O 1.43639 * 105.25849 * 323.81571 * 18 17 15 20 20 C 1.43234 * 109.97643 * 24.28515 * 19 18 17 21 21 H 1.09000 * 109.47199 * 63.23203 * 1 2 3 22 22 H 1.09001 * 109.47128 * 183.23447 * 1 2 3 23 23 H 1.08997 * 109.47272 * 303.23052 * 1 2 3 24 24 H 1.08993 * 109.47253 * 239.99459 * 2 1 3 25 25 H 1.08999 * 109.47032 * 119.99258 * 2 1 3 26 26 H 0.97005 * 119.99808 * 180.02562 * 8 7 5 27 27 H 1.00908 * 111.00017 * 322.82634 * 13 3 2 28 28 H 1.08997 * 109.47394 * 294.83288 * 14 13 3 29 29 H 1.09002 * 109.46766 * 54.82646 * 14 13 3 30 30 H 1.09002 * 109.47252 * 60.69585 * 16 15 14 31 31 H 1.08999 * 109.47221 * 180.70223 * 16 15 14 32 32 H 1.09001 * 109.47142 * 300.69832 * 16 15 14 33 33 H 1.08999 * 111.12601 * 270.24044 * 17 15 14 34 34 H 1.08992 * 111.12981 * 34.41061 * 17 15 14 35 35 H 1.08995 * 110.36734 * 204.79636 * 18 17 15 36 36 H 1.08999 * 110.20849 * 82.75015 * 18 17 15 37 37 H 1.09000 * 109.83482 * 238.77754 * 20 19 18 38 38 H 1.08996 * 109.83713 * 117.80127 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1256 1.4441 -0.0974 5 6 1.4307 2.1907 -1.1577 6 1 0.8224 3.0643 -0.9759 7 6 1.6500 1.7597 -2.4489 8 7 2.3912 0.6962 -2.6703 9 14 0.8955 2.6875 -3.8840 10 1 0.1114 3.8397 -3.3712 11 1 1.9745 3.1808 -4.7770 12 1 0.0000 1.7792 -4.6446 13 7 1.6603 2.0962 1.2596 14 6 2.6640 1.8505 2.3036 15 6 2.3021 2.6494 3.5573 16 6 0.9203 2.2469 4.0764 17 6 3.3811 2.4673 4.6593 18 6 3.2408 3.8079 5.4289 19 8 2.9550 4.7930 4.4233 20 6 2.3639 4.1666 3.2788 21 1 -0.3633 0.4628 -0.9175 22 1 -0.3633 -1.0260 0.0580 23 1 -0.3634 0.5631 0.8596 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 2.5458 0.3932 -3.5787 27 1 0.7448 1.7971 1.5606 28 1 2.6858 0.7875 2.5438 29 1 3.6451 2.1620 1.9450 30 1 0.9237 1.1880 4.3352 31 1 0.6785 2.8364 4.9607 32 1 0.1742 2.4294 3.3029 33 1 3.1487 1.6167 5.3000 34 1 4.3751 2.3684 4.2234 35 1 4.1714 4.0500 5.9420 36 1 2.4200 3.7477 6.1436 37 1 2.9753 4.3560 2.3965 38 1 1.3576 4.5552 3.1230 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397293841.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:13 Heat of formation + Delta-G solvation = -78.360014 kcal Electronic energy + Delta-G solvation = -16714.307799 eV Core-core repulsion = 14169.340647 eV Total energy + Delta-G solvation = -2544.967152 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.80702 -38.27556 -35.58813 -33.73141 -31.89182 -30.35754 -28.38323 -27.68892 -25.71174 -24.97390 -23.15633 -21.20255 -20.27017 -18.21005 -17.24069 -16.96512 -16.60818 -16.28990 -15.60883 -15.30692 -15.00505 -14.39353 -14.35330 -14.17851 -13.84383 -13.61384 -13.22455 -12.86307 -12.69728 -12.66429 -12.43319 -12.32083 -12.05395 -11.86520 -11.65118 -11.51502 -11.43097 -11.31435 -10.88837 -10.42789 -10.40604 -8.89416 -8.04965 -6.12907 1.41121 1.44409 1.55231 2.45983 3.01878 3.24112 3.42892 3.69029 3.89575 4.04429 4.28375 4.32822 4.37800 4.55214 4.57662 4.67984 4.73645 4.76670 4.83331 4.88890 4.94770 5.01837 5.06881 5.11422 5.14529 5.23177 5.37859 5.43774 5.45697 5.69249 5.75867 5.85665 6.12736 6.33970 6.70231 6.89244 7.01356 7.55244 9.00602 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036857 B = 0.006753 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.508490 B = 4145.411935 C = 4473.444954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.138 4.138 3 C 0.221 3.779 4 H -0.006 1.006 5 C -0.497 4.497 6 H 0.052 0.948 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.949 3.051 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.281 1.281 13 N -0.685 5.685 14 C 0.080 3.920 15 C -0.085 4.085 16 C -0.134 4.134 17 C -0.142 4.142 18 C 0.049 3.951 19 O -0.412 6.412 20 C 0.075 3.925 21 H 0.039 0.961 22 H 0.043 0.957 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.026 0.974 26 H 0.258 0.742 27 H 0.334 0.666 28 H 0.026 0.974 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.252 0.827 14.462 14.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.112 3.888 4 H 0.012 0.988 5 C -0.536 4.536 6 H 0.070 0.930 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.207 1.207 13 N -0.317 5.317 14 C -0.050 4.050 15 C -0.086 4.086 16 C -0.191 4.191 17 C -0.180 4.180 18 C -0.027 4.027 19 O -0.333 6.333 20 C -0.001 4.001 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.154 0.846 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.892 1.563 14.153 14.267 hybrid contribution -0.244 -0.843 -1.150 1.446 sum -1.135 0.720 13.004 13.073 Atomic orbital electron populations 1.21440 0.95848 0.99321 1.00896 1.21943 0.96562 0.99945 0.99316 1.18947 0.93440 0.89515 0.86900 0.98799 1.21339 1.30102 1.11245 0.90877 0.92962 1.25581 0.96030 0.95906 1.01002 1.70020 1.40221 1.25271 1.20770 0.85637 0.78202 0.78868 0.79712 1.19396 1.21200 1.20727 1.60708 1.04804 1.62854 1.03318 1.21817 0.95623 0.96595 0.90991 1.22062 0.97356 0.94478 0.94677 1.21776 0.94321 1.01868 1.01122 1.23380 0.98708 0.99122 0.96824 1.23567 1.01679 0.86673 0.90798 1.88338 1.82505 1.34566 1.27842 1.22990 0.97704 0.91759 0.87692 0.94137 0.93760 0.93115 0.92180 0.95567 0.93283 0.84556 0.95613 0.93353 0.91449 0.91268 0.92523 0.87779 0.90795 0.88567 0.90908 0.92990 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 9.39 71.98 0.68 -4.11 16 2 C -0.14 -6.35 5.51 30.60 0.17 -6.18 16 3 C 0.22 10.87 2.34 44.17 0.10 10.97 16 4 H -0.01 -0.33 7.69 -2.39 -0.02 -0.35 16 5 C -0.50 -26.97 7.40 25.60 0.19 -26.78 16 6 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.70 5.25 84.65 0.44 1.14 16 8 N -0.92 -52.80 11.38 21.45 0.24 -52.55 16 9 Si 0.95 44.02 29.54 68.60 2.03 46.05 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 N -0.68 -27.64 5.90 -495.44 -2.92 -30.56 16 14 C 0.08 2.71 4.40 86.30 0.38 3.09 16 15 C -0.09 -2.30 0.72 -50.92 -0.04 -2.34 16 16 C -0.13 -3.08 8.09 71.98 0.58 -2.50 16 17 C -0.14 -3.06 6.14 32.15 0.20 -2.87 16 18 C 0.05 1.03 7.49 72.74 0.55 1.58 16 19 O -0.41 -12.30 11.36 -148.98 -1.69 -14.00 16 20 C 0.07 2.33 6.77 72.45 0.49 2.82 16 21 H 0.04 1.84 7.15 -2.39 -0.02 1.82 16 22 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.05 1.83 6.34 -2.39 -0.02 1.81 16 24 H 0.06 3.18 6.24 -2.39 -0.01 3.16 16 25 H 0.03 1.09 7.56 -2.39 -0.02 1.07 16 26 H 0.26 14.15 8.31 -92.70 -0.77 13.38 16 27 H 0.33 12.53 4.87 -89.69 -0.44 12.09 16 28 H 0.03 0.86 7.59 -2.39 -0.02 0.84 16 29 H 0.05 1.81 7.90 -2.39 -0.02 1.79 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.38 7.59 -2.39 -0.02 1.37 16 32 H 0.06 1.44 6.77 -2.39 -0.02 1.42 16 33 H 0.10 1.75 8.03 -2.39 -0.02 1.73 16 34 H 0.07 1.66 8.04 -2.39 -0.02 1.64 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 1.30 7.82 -2.39 -0.02 1.29 16 37 H 0.05 1.87 7.80 -2.39 -0.02 1.85 16 38 H 0.06 2.03 7.84 -2.39 -0.02 2.01 16 Total: -1.00 -59.88 292.74 1.98 -57.90 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.58 Total: 18.33 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 3.74 Total: -25.18 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -2.68 Total: -83.11 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -1.69 Total: -14.00 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -59.88 1.98 -57.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397293841.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.457 kcal (2) G-P(sol) polarization free energy of solvation -59.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds