Wall clock time and date at job start Sun Mar 29 2020 21:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46608 * 2 1 4 4 H 1.09000 * 109.46784 * 55.00588 * 3 2 1 5 5 O 1.42898 * 109.47116 * 295.00194 * 3 2 1 6 6 C 1.53002 * 109.46762 * 174.99952 * 3 2 1 7 7 N 1.46903 * 109.46758 * 182.75722 * 6 3 2 8 8 C 1.46850 * 110.99845 * 200.00479 * 7 6 3 9 9 C 1.53037 * 109.52457 * 174.16039 * 8 7 6 10 10 C 1.53118 * 109.27403 * 59.17995 * 9 8 7 11 11 C 1.53114 * 109.16285 * 302.34261 * 10 9 8 12 12 H 1.09004 * 109.50783 * 297.71790 * 11 10 9 13 13 C 1.50699 * 109.50595 * 177.59675 * 11 10 9 14 14 H 1.08000 * 120.00147 * 240.19890 * 13 11 10 15 15 C 1.37881 * 119.99873 * 60.19883 * 13 11 10 16 16 N 1.31521 * 119.99856 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00162 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46930 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46590 * 120.00061 * 17 15 13 20 20 H 1.48492 * 109.47053 * 239.99938 * 17 15 13 21 21 C 1.46842 * 111.00239 * 75.79690 * 7 6 3 22 22 H 1.08998 * 109.47626 * 60.00232 * 1 2 3 23 23 H 1.09006 * 109.46728 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47217 * 299.99146 * 1 2 3 25 25 H 1.09000 * 109.47217 * 240.00854 * 2 1 3 26 26 H 1.08998 * 109.47626 * 119.99768 * 2 1 3 27 27 H 0.96702 * 113.99765 * 299.99629 * 5 3 2 28 28 H 1.09000 * 109.47220 * 62.75797 * 6 3 2 29 29 H 1.08998 * 109.47372 * 302.75726 * 6 3 2 30 30 H 1.09005 * 109.46352 * 294.17975 * 8 7 6 31 31 H 1.09005 * 109.46377 * 54.14402 * 8 7 6 32 32 H 1.09002 * 109.49879 * 299.24060 * 9 8 7 33 33 H 1.09003 * 109.50138 * 179.12065 * 9 8 7 34 34 H 1.09005 * 109.51849 * 182.43927 * 10 9 8 35 35 H 1.08998 * 109.57919 * 62.28419 * 10 9 8 36 36 H 0.96998 * 119.99820 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.45825 * 305.85833 * 21 7 6 38 38 H 1.09006 * 109.46256 * 65.83052 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 8 1.6618 2.0815 -1.2210 6 6 3.5648 1.4445 0.1257 7 7 4.0488 2.8299 0.1922 8 6 5.4725 2.9073 -0.1597 9 6 5.9049 4.3740 -0.2218 10 6 5.6599 5.0312 1.1393 11 6 4.1792 4.8943 1.5042 12 1 3.5725 5.4207 0.7674 13 6 3.9405 5.4865 2.8693 14 1 3.5546 4.8682 3.6662 15 6 4.2149 6.8178 3.1007 16 7 4.6844 7.5709 2.1301 17 14 3.9184 7.5522 4.7926 18 1 3.3904 6.5035 5.7017 19 1 5.1968 8.0787 5.3345 20 1 2.9330 8.6579 4.6864 21 6 3.7967 3.4126 1.5162 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8900 27 1 2.0141 1.6544 -2.0139 28 1 4.0014 0.9482 -0.7409 29 1 3.8552 0.9142 1.0327 30 1 6.0620 2.3864 0.5949 31 1 5.6324 2.4401 -1.1315 32 1 5.3254 4.8922 -0.9858 33 1 6.9654 4.4306 -0.4676 34 1 5.9261 6.0870 1.0871 35 1 6.2689 4.5391 1.8975 36 1 4.8778 8.5073 2.2930 37 1 2.7395 3.3122 1.7618 38 1 4.3942 2.8895 2.2630 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397666720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:43 Heat of formation + Delta-G solvation = -70.483453 kcal Electronic energy + Delta-G solvation = -16584.619970 eV Core-core repulsion = 14039.994371 eV Total energy + Delta-G solvation = -2544.625599 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.68354 -36.97566 -33.55837 -32.66771 -31.60855 -29.82467 -27.74516 -24.92795 -23.84980 -21.86305 -21.18221 -20.80262 -18.55459 -16.46759 -15.96986 -15.69364 -14.97713 -14.62980 -14.42920 -14.02473 -13.31942 -12.94565 -12.82695 -12.46402 -12.35319 -11.98310 -11.93279 -11.52870 -11.30349 -10.97803 -10.93160 -10.72165 -10.60011 -10.49941 -10.05858 -9.79697 -9.66449 -9.40407 -8.95835 -8.63639 -8.25880 -7.56597 -5.93171 -3.99077 3.32506 3.40370 3.44007 4.28390 4.49223 4.75688 4.96810 5.12392 5.18736 5.36832 5.39508 5.59226 5.69642 5.77431 5.81697 5.86937 5.92262 5.93712 6.10386 6.24331 6.27811 6.36465 6.44544 6.56143 6.75666 6.79899 7.03164 7.27254 7.44659 7.70978 7.79466 7.86207 8.00543 8.15157 8.22878 8.53207 9.05325 9.64921 11.13009 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.007027 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.133272 B = 3983.846619 C = 4603.143634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.155 4.155 3 C 0.112 3.888 4 H 0.099 0.901 5 O -0.544 6.544 6 C 0.023 3.977 7 N -0.529 5.529 8 C 0.064 3.936 9 C -0.117 4.117 10 C -0.110 4.110 11 C 0.054 3.946 12 H 0.035 0.965 13 C -0.513 4.513 14 H 0.053 0.947 15 C 0.062 3.938 16 N -0.888 5.888 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.068 3.932 22 H 0.061 0.939 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.364 0.636 28 H 0.065 0.935 29 H 0.034 0.966 30 H 0.020 0.980 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.028 0.972 36 H 0.259 0.741 37 H 0.058 0.942 38 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.162 -13.098 -5.225 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 C 0.052 3.948 4 H 0.117 0.883 5 O -0.347 6.347 6 C -0.106 4.106 7 N -0.253 5.253 8 C -0.064 4.064 9 C -0.155 4.155 10 C -0.148 4.148 11 C 0.036 3.964 12 H 0.054 0.946 13 C -0.552 4.552 14 H 0.071 0.929 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.717 3.283 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.059 4.059 22 H 0.080 0.920 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.209 0.791 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -2.673 -12.234 -5.179 13.551 hybrid contribution 0.735 -0.517 1.246 1.536 sum -1.938 -12.751 -3.934 13.484 Atomic orbital electron populations 1.21684 0.95209 1.00956 1.02599 1.22238 0.97096 0.97819 1.02224 1.21955 0.92903 0.91505 0.88416 0.88323 1.86657 1.75997 1.57148 1.14904 1.22797 0.96350 0.91156 1.00279 1.61919 1.16648 1.15602 1.31139 1.22034 0.87940 0.98152 0.98238 1.21670 0.98514 0.94295 1.00997 1.21647 0.99184 1.02108 0.91906 1.18661 0.92686 0.88416 0.96679 0.94636 1.21194 1.42967 0.94752 0.96292 0.92876 1.24938 0.95185 0.97109 0.96635 1.69910 1.44835 1.06566 1.31410 0.86582 0.77789 0.79183 0.84705 1.19898 1.21127 1.21025 1.22338 0.99207 0.98566 0.85749 0.92040 0.93254 0.92666 0.91994 0.91436 0.79060 0.91683 0.94741 0.96202 0.92650 0.92003 0.93633 0.89153 0.95279 0.93149 0.92349 0.96588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.81 37.16 0.36 -1.18 16 2 C -0.16 -1.67 5.61 -26.73 -0.15 -1.82 16 3 C 0.11 1.57 3.04 -26.73 -0.08 1.49 16 4 H 0.10 1.60 6.76 -51.93 -0.35 1.25 16 5 O -0.54 -8.17 12.79 -35.23 -0.45 -8.63 16 6 C 0.02 0.34 4.65 -3.82 -0.02 0.33 16 7 N -0.53 -10.01 4.50 -234.66 -1.06 -11.07 16 8 C 0.06 1.16 5.43 -3.83 -0.02 1.14 16 9 C -0.12 -2.35 6.09 -26.65 -0.16 -2.52 16 10 C -0.11 -2.68 5.03 -26.61 -0.13 -2.81 16 11 C 0.05 1.40 2.26 -91.69 -0.21 1.20 16 12 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 13 C -0.51 -14.38 8.56 -34.44 -0.29 -14.67 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -25.82 11.36 55.43 0.63 -25.19 16 17 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 C 0.07 1.50 4.51 -3.84 -0.02 1.48 16 22 H 0.06 0.67 7.82 -51.93 -0.41 0.27 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.36 4.05 9.05 45.56 0.41 4.46 16 28 H 0.06 0.84 7.79 -51.93 -0.40 0.44 16 29 H 0.03 0.51 8.00 -51.93 -0.42 0.09 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.87 7.93 -51.93 -0.41 0.45 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.06 1.28 6.68 -51.93 -0.35 0.93 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 297.48 15.07 4.48 4.48 Total: -1.00 -29.86 297.48 -8.24 -38.10 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.01 Total: 1.46 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -0.82 Total: -15.71 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.43 Total: -36.26 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.45 Total: -8.63 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.86 -8.24 -38.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397666720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.382 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds