Wall clock time and date at job start Sun Mar 29 2020 21:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46608 * 2 1 4 4 H 1.09000 * 109.46784 * 55.00588 * 3 2 1 5 5 O 1.42898 * 109.47116 * 295.00194 * 3 2 1 6 6 C 1.53002 * 109.46762 * 174.99952 * 3 2 1 7 7 N 1.46903 * 109.46758 * 182.75722 * 6 3 2 8 8 C 1.46850 * 110.99845 * 200.00479 * 7 6 3 9 9 C 1.53037 * 109.52457 * 174.16039 * 8 7 6 10 10 C 1.53118 * 109.27403 * 59.17995 * 9 8 7 11 11 C 1.53114 * 109.16285 * 302.34261 * 10 9 8 12 12 H 1.09004 * 109.50783 * 297.71790 * 11 10 9 13 13 C 1.50699 * 109.50595 * 177.59675 * 11 10 9 14 14 H 1.08000 * 120.00147 * 240.19890 * 13 11 10 15 15 C 1.37881 * 119.99873 * 60.19883 * 13 11 10 16 16 N 1.31521 * 119.99856 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00162 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46930 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46590 * 120.00061 * 17 15 13 20 20 H 1.48492 * 109.47053 * 239.99938 * 17 15 13 21 21 C 1.46842 * 111.00239 * 75.79690 * 7 6 3 22 22 H 1.08998 * 109.47626 * 60.00232 * 1 2 3 23 23 H 1.09006 * 109.46728 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47217 * 299.99146 * 1 2 3 25 25 H 1.09000 * 109.47217 * 240.00854 * 2 1 3 26 26 H 1.08998 * 109.47626 * 119.99768 * 2 1 3 27 27 H 0.96702 * 113.99765 * 299.99629 * 5 3 2 28 28 H 1.09000 * 109.47220 * 62.75797 * 6 3 2 29 29 H 1.08998 * 109.47372 * 302.75726 * 6 3 2 30 30 H 1.09005 * 109.46352 * 294.17975 * 8 7 6 31 31 H 1.09005 * 109.46377 * 54.14402 * 8 7 6 32 32 H 1.09002 * 109.49879 * 299.24060 * 9 8 7 33 33 H 1.09003 * 109.50138 * 179.12065 * 9 8 7 34 34 H 1.09005 * 109.51849 * 182.43927 * 10 9 8 35 35 H 1.08998 * 109.57919 * 62.28419 * 10 9 8 36 36 H 0.96998 * 119.99820 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.45825 * 305.85833 * 21 7 6 38 38 H 1.09006 * 109.46256 * 65.83052 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 8 1.6618 2.0815 -1.2210 6 6 3.5648 1.4445 0.1257 7 7 4.0488 2.8299 0.1922 8 6 5.4725 2.9073 -0.1597 9 6 5.9049 4.3740 -0.2218 10 6 5.6599 5.0312 1.1393 11 6 4.1792 4.8943 1.5042 12 1 3.5725 5.4207 0.7674 13 6 3.9405 5.4865 2.8693 14 1 3.5546 4.8682 3.6662 15 6 4.2149 6.8178 3.1007 16 7 4.6844 7.5709 2.1301 17 14 3.9184 7.5522 4.7926 18 1 3.3904 6.5035 5.7017 19 1 5.1968 8.0787 5.3345 20 1 2.9330 8.6579 4.6864 21 6 3.7967 3.4126 1.5162 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8900 27 1 2.0141 1.6544 -2.0139 28 1 4.0014 0.9482 -0.7409 29 1 3.8552 0.9142 1.0327 30 1 6.0620 2.3864 0.5949 31 1 5.6324 2.4401 -1.1315 32 1 5.3254 4.8922 -0.9858 33 1 6.9654 4.4306 -0.4676 34 1 5.9261 6.0870 1.0871 35 1 6.2689 4.5391 1.8975 36 1 4.8778 8.5073 2.2930 37 1 2.7395 3.3122 1.7618 38 1 4.3942 2.8895 2.2630 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397666720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:42 Heat of formation + Delta-G solvation = -91.630187 kcal Electronic energy + Delta-G solvation = -16585.536961 eV Core-core repulsion = 14039.994371 eV Total energy + Delta-G solvation = -2545.542590 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.11944 -38.30860 -35.43064 -33.78159 -33.20325 -31.69484 -28.99306 -26.96780 -25.20030 -23.30819 -22.77511 -21.98767 -20.35031 -18.46387 -17.18127 -17.03293 -16.50610 -16.24656 -15.77148 -15.43401 -14.90065 -14.55572 -14.26269 -14.12698 -13.89896 -13.38341 -12.97088 -12.90188 -12.83490 -12.71285 -12.56235 -12.35226 -11.85356 -11.78585 -11.78057 -11.55361 -11.36754 -10.97912 -10.74023 -10.52564 -10.38299 -9.04576 -8.08870 -6.23414 1.39198 1.40372 1.52145 2.41911 3.01984 3.17882 3.73614 3.83209 4.13043 4.19751 4.25812 4.28721 4.33092 4.50795 4.56623 4.66502 4.73744 4.76361 4.87134 4.89284 4.97609 5.00880 5.10173 5.11812 5.19342 5.35047 5.41366 5.43332 5.51902 5.62508 5.96417 6.13386 6.20982 6.40020 6.46157 6.89714 7.07636 7.44516 8.96265 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.007027 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.133272 B = 3983.846619 C = 4603.143634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.113 3.887 4 H 0.067 0.933 5 O -0.567 6.567 6 C 0.024 3.976 7 N -0.543 5.543 8 C 0.067 3.933 9 C -0.111 4.111 10 C -0.104 4.104 11 C 0.052 3.948 12 H -0.009 1.009 13 C -0.537 4.537 14 H 0.050 0.950 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 0.956 3.044 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.280 1.280 21 C 0.084 3.916 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.042 0.958 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.381 0.619 28 H 0.096 0.904 29 H 0.041 0.959 30 H 0.026 0.974 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.023 0.977 36 H 0.260 0.740 37 H 0.050 0.950 38 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.819 -15.126 -5.494 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C 0.054 3.946 4 H 0.085 0.915 5 O -0.373 6.373 6 C -0.104 4.104 7 N -0.268 5.268 8 C -0.061 4.061 9 C -0.149 4.149 10 C -0.142 4.142 11 C 0.033 3.967 12 H 0.010 0.990 13 C -0.576 4.576 14 H 0.068 0.932 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.781 3.219 18 H -0.192 1.192 19 H -0.204 1.204 20 H -0.206 1.206 21 C -0.043 4.043 22 H 0.072 0.928 23 H 0.087 0.913 24 H 0.061 0.939 25 H 0.103 0.897 26 H 0.094 0.906 27 H 0.229 0.771 28 H 0.114 0.886 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.110 0.890 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -2.328 -14.286 -5.463 15.471 hybrid contribution 0.609 0.128 1.277 1.420 sum -1.719 -14.158 -4.186 14.864 Atomic orbital electron populations 1.21686 0.95231 1.01923 1.01637 1.22142 0.96986 0.95434 1.03737 1.21883 0.92363 0.93128 0.87249 0.91534 1.86617 1.76467 1.58255 1.15954 1.22912 0.96769 0.88771 1.01901 1.61841 1.17599 1.18472 1.28847 1.22058 0.87279 0.96429 1.00298 1.21586 1.00036 0.95636 0.97626 1.21452 0.97852 1.00450 0.94442 1.18580 0.93044 0.90597 0.94469 0.99045 1.21560 1.43256 0.95424 0.97312 0.93165 1.25750 0.94849 0.97528 1.00454 1.70055 1.45362 1.06799 1.33363 0.85545 0.77864 0.78345 0.80142 1.19159 1.20377 1.20599 1.21954 0.98505 0.96153 0.87712 0.92803 0.91274 0.93908 0.89701 0.90564 0.77058 0.88588 0.94099 0.95606 0.89034 0.93388 0.91088 0.92532 0.95831 0.93044 0.93188 0.96841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.81 71.98 0.71 -2.12 16 2 C -0.14 -2.72 5.61 30.60 0.17 -2.55 16 3 C 0.11 3.03 3.04 30.60 0.09 3.12 16 4 H 0.07 2.19 6.76 -2.39 -0.02 2.17 16 5 O -0.57 -16.30 12.79 -148.98 -1.91 -18.21 16 6 C 0.02 0.66 4.65 86.30 0.40 1.06 16 7 N -0.54 -19.87 4.50 -896.33 -4.03 -23.90 16 8 C 0.07 2.24 5.43 86.33 0.47 2.71 16 9 C -0.11 -4.38 6.09 30.65 0.19 -4.19 16 10 C -0.10 -5.15 5.03 30.67 0.15 -5.00 16 11 C 0.05 2.78 2.26 -11.49 -0.03 2.75 16 12 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 13 C -0.54 -30.98 8.56 25.60 0.22 -30.76 16 14 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 15 C 0.01 0.73 5.30 84.65 0.45 1.18 16 16 N -0.92 -54.88 11.36 21.45 0.24 -54.64 16 17 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 21 C 0.08 3.75 4.51 86.33 0.39 4.14 16 22 H 0.05 1.11 7.82 -2.39 -0.02 1.09 16 23 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 27 H 0.38 7.58 9.05 -74.06 -0.67 6.91 16 28 H 0.10 2.04 7.79 -2.39 -0.02 2.03 16 29 H 0.04 1.08 8.00 -2.39 -0.02 1.07 16 30 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.09 2.46 7.93 -2.38 -0.02 2.44 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.06 3.17 6.17 -2.38 -0.01 3.16 16 35 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.05 2.26 6.68 -2.39 -0.02 2.24 16 38 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -66.32 297.48 -0.11 -66.43 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.34 Total: 13.09 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 3.21 Total: -29.66 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -3.79 Total: -78.54 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -1.91 Total: -18.21 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -66.32 -0.11 -66.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397666720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.202 kcal (2) G-P(sol) polarization free energy of solvation -66.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds