Wall clock time and date at job start Sun Mar 29 2020 21:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47394 * 2 1 4 4 H 1.09006 * 109.46892 * 55.00232 * 3 2 1 5 5 O 1.42895 * 109.47467 * 295.00343 * 3 2 1 6 6 C 1.53004 * 109.47163 * 174.99677 * 3 2 1 7 7 N 1.46899 * 109.47079 * 178.77635 * 6 3 2 8 8 C 1.46851 * 110.99898 * 51.94672 * 7 6 3 9 9 C 1.53036 * 109.52143 * 185.83875 * 8 7 6 10 10 C 1.53125 * 109.27990 * 300.82083 * 9 8 7 11 11 C 1.53118 * 109.15877 * 57.65730 * 10 9 8 12 12 H 1.08994 * 109.53568 * 62.30726 * 11 10 9 13 13 C 1.50698 * 109.49886 * 182.40824 * 11 10 9 14 14 H 1.08004 * 120.00405 * 119.80554 * 13 11 10 15 15 C 1.37881 * 119.99740 * 299.79797 * 13 11 10 16 16 N 1.31512 * 120.00423 * 0.02562 * 15 13 11 17 17 Si 1.86808 * 119.99732 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47111 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46955 * 120.00172 * 17 15 13 20 20 H 1.48498 * 109.46882 * 240.00181 * 17 15 13 21 21 C 1.46852 * 111.00091 * 176.15713 * 7 6 3 22 22 H 1.08998 * 109.46799 * 59.99768 * 1 2 3 23 23 H 1.08991 * 109.47325 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46569 * 299.99810 * 1 2 3 25 25 H 1.09006 * 109.47272 * 239.99986 * 2 1 3 26 26 H 1.09007 * 109.46891 * 120.00398 * 2 1 3 27 27 H 0.96708 * 113.99395 * 299.99681 * 5 3 2 28 28 H 1.08997 * 109.47734 * 298.77744 * 6 3 2 29 29 H 1.08999 * 109.46975 * 58.78403 * 6 3 2 30 30 H 1.09000 * 109.45991 * 305.85111 * 8 7 6 31 31 H 1.08995 * 109.46212 * 65.82297 * 8 7 6 32 32 H 1.09002 * 109.50148 * 180.88196 * 9 8 7 33 33 H 1.08997 * 109.54057 * 60.78031 * 9 8 7 34 34 H 1.08996 * 109.52117 * 297.74756 * 10 9 8 35 35 H 1.09000 * 109.57124 * 177.59122 * 10 9 8 36 36 H 0.96995 * 120.00169 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.45752 * 294.17787 * 21 7 6 38 38 H 1.08997 * 109.46224 * 54.15522 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6620 2.0814 -1.2209 6 6 3.5649 1.4442 0.1258 7 7 4.0570 2.8280 0.0963 8 6 3.3514 3.6585 1.0806 9 6 3.7842 5.1179 0.9225 10 6 5.2977 5.2217 1.1306 11 6 6.0069 4.3105 0.1250 12 1 5.7880 4.6462 -0.8886 13 6 7.4943 4.3615 0.3618 14 1 8.0319 3.4599 0.6161 15 6 8.1689 5.5591 0.2536 16 7 7.5143 6.6570 -0.0557 17 14 10.0128 5.6222 0.5465 18 1 10.5083 4.2619 0.8770 19 1 10.6922 6.1117 -0.6799 20 1 10.3035 6.5432 1.6745 21 6 5.5097 2.8745 0.3062 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.0142 1.6542 -2.0138 28 1 3.8524 0.9763 1.0673 29 1 3.9986 0.8867 -0.7044 30 1 2.2764 3.5790 0.9189 31 1 3.5937 3.3148 2.0862 32 1 3.2721 5.7317 1.6635 33 1 3.5297 5.4672 -0.0781 34 1 5.5482 4.9100 2.1445 35 1 5.6176 6.2523 0.9768 36 1 7.9888 7.4996 -0.1314 37 1 5.7418 2.5344 1.3155 38 1 6.0023 2.2256 -0.4179 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397666722.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:45 Heat of formation + Delta-G solvation = -68.331891 kcal Electronic energy + Delta-G solvation = -16544.454927 eV Core-core repulsion = 13999.922627 eV Total energy + Delta-G solvation = -2544.532300 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.84014 -36.95006 -33.56225 -32.73633 -31.58798 -29.87577 -27.75350 -24.95640 -23.88160 -21.87163 -21.60844 -20.41868 -18.55309 -16.50429 -16.03117 -15.81304 -14.90644 -14.84472 -14.31091 -13.98473 -13.32843 -13.21954 -12.83730 -12.49163 -12.32663 -11.96429 -11.91907 -11.59444 -11.28985 -11.07214 -10.94645 -10.80575 -10.64340 -10.44858 -9.96239 -9.87280 -9.70238 -9.39354 -8.92747 -8.64538 -8.26589 -7.56659 -5.94099 -4.00355 3.31601 3.39532 3.43096 4.26631 4.48327 4.71176 4.83820 5.02286 5.08436 5.35673 5.37861 5.48899 5.65261 5.75133 5.82182 5.83187 5.92598 5.93526 6.14347 6.15492 6.23873 6.35368 6.46913 6.56450 6.79900 6.81789 7.02604 7.28556 7.44974 7.73560 7.78470 7.82153 7.94831 8.13433 8.22289 8.52258 9.04090 9.63777 11.11883 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.055558 B = 0.005764 C = 0.005482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.860123 B = 4856.199337 C = 5106.308243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.156 4.156 3 C 0.106 3.894 4 H 0.097 0.903 5 O -0.547 6.547 6 C 0.022 3.978 7 N -0.528 5.528 8 C 0.060 3.940 9 C -0.116 4.116 10 C -0.110 4.110 11 C 0.055 3.945 12 H 0.034 0.966 13 C -0.514 4.514 14 H 0.053 0.947 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.067 3.933 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.371 0.629 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.017 0.983 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.028 0.972 35 H 0.090 0.910 36 H 0.259 0.741 37 H 0.016 0.984 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.765 -10.298 0.784 14.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.195 4.195 3 C 0.046 3.954 4 H 0.114 0.886 5 O -0.351 6.351 6 C -0.107 4.107 7 N -0.252 5.252 8 C -0.068 4.068 9 C -0.154 4.154 10 C -0.148 4.148 11 C 0.036 3.964 12 H 0.053 0.947 13 C -0.553 4.553 14 H 0.071 0.929 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.718 3.282 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.060 4.060 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.217 0.783 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.133 -9.514 0.707 14.662 hybrid contribution 1.589 -0.734 0.729 1.896 sum -9.544 -10.248 1.436 14.077 Atomic orbital electron populations 1.21682 0.95259 1.01085 1.02395 1.22239 0.96966 0.97729 1.02530 1.22035 0.93040 0.91828 0.88459 0.88572 1.86578 1.76071 1.57329 1.15140 1.22813 0.95499 0.91936 1.00432 1.61976 1.05865 1.07205 1.50173 1.22100 0.97580 0.94991 0.92112 1.21654 0.99202 0.93663 1.00884 1.21649 0.90660 1.04422 0.98110 1.18659 0.93699 0.87937 0.96101 0.94742 1.21197 0.92693 0.94079 1.47342 0.92875 1.24938 0.97991 0.95765 0.95154 1.69906 1.35219 0.98958 1.48581 0.86582 0.85947 0.77956 0.77761 1.19902 1.21039 1.21109 1.22324 0.84552 1.01480 0.97620 0.92012 0.93137 0.92897 0.91678 0.91398 0.78259 0.95089 0.91035 0.91717 0.96442 0.93711 0.91992 0.95322 0.89180 0.93133 0.96533 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.81 37.16 0.36 -1.01 16 2 C -0.16 -1.55 5.61 -26.73 -0.15 -1.70 16 3 C 0.11 1.35 2.38 -26.73 -0.06 1.29 16 4 H 0.10 1.30 6.27 -51.93 -0.33 0.97 16 5 O -0.55 -7.59 12.72 -35.23 -0.45 -8.04 16 6 C 0.02 0.33 4.80 -3.82 -0.02 0.31 16 7 N -0.53 -10.01 4.61 -234.67 -1.08 -11.10 16 8 C 0.06 1.11 5.04 -3.83 -0.02 1.09 16 9 C -0.12 -2.39 6.09 -26.65 -0.16 -2.56 16 10 C -0.11 -2.69 5.03 -26.61 -0.13 -2.83 16 11 C 0.05 1.41 2.26 -91.69 -0.21 1.20 16 12 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 13 C -0.51 -14.33 8.56 -34.44 -0.29 -14.63 16 14 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 15 C 0.06 1.76 5.31 -17.82 -0.09 1.66 16 16 N -0.89 -25.71 11.36 55.43 0.63 -25.08 16 17 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 C 0.07 1.47 4.68 -3.83 -0.02 1.45 16 22 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.37 4.05 9.05 45.56 0.41 4.46 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.10 5.87 -51.93 -0.30 0.79 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.09 2.45 6.16 -51.93 -0.32 2.13 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 LS Contribution 296.14 15.07 4.46 4.46 Total: -1.00 -29.52 296.14 -8.24 -37.75 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.98 Total: 1.30 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -0.80 Total: -15.73 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.45 Total: -36.17 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.45 Total: -8.04 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.52 -8.24 -37.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397666722.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.581 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds