Wall clock time and date at job start Sun Mar 29 2020 21:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47394 * 2 1 4 4 H 1.09006 * 109.46892 * 55.00232 * 3 2 1 5 5 O 1.42895 * 109.47467 * 295.00343 * 3 2 1 6 6 C 1.53004 * 109.47163 * 174.99677 * 3 2 1 7 7 N 1.46899 * 109.47079 * 178.77635 * 6 3 2 8 8 C 1.46851 * 110.99898 * 51.94672 * 7 6 3 9 9 C 1.53036 * 109.52143 * 185.83875 * 8 7 6 10 10 C 1.53125 * 109.27990 * 300.82083 * 9 8 7 11 11 C 1.53118 * 109.15877 * 57.65730 * 10 9 8 12 12 H 1.08994 * 109.53568 * 62.30726 * 11 10 9 13 13 C 1.50698 * 109.49886 * 182.40824 * 11 10 9 14 14 H 1.08004 * 120.00405 * 119.80554 * 13 11 10 15 15 C 1.37881 * 119.99740 * 299.79797 * 13 11 10 16 16 N 1.31512 * 120.00423 * 0.02562 * 15 13 11 17 17 Si 1.86808 * 119.99732 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47111 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46955 * 120.00172 * 17 15 13 20 20 H 1.48498 * 109.46882 * 240.00181 * 17 15 13 21 21 C 1.46852 * 111.00091 * 176.15713 * 7 6 3 22 22 H 1.08998 * 109.46799 * 59.99768 * 1 2 3 23 23 H 1.08991 * 109.47325 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46569 * 299.99810 * 1 2 3 25 25 H 1.09006 * 109.47272 * 239.99986 * 2 1 3 26 26 H 1.09007 * 109.46891 * 120.00398 * 2 1 3 27 27 H 0.96708 * 113.99395 * 299.99681 * 5 3 2 28 28 H 1.08997 * 109.47734 * 298.77744 * 6 3 2 29 29 H 1.08999 * 109.46975 * 58.78403 * 6 3 2 30 30 H 1.09000 * 109.45991 * 305.85111 * 8 7 6 31 31 H 1.08995 * 109.46212 * 65.82297 * 8 7 6 32 32 H 1.09002 * 109.50148 * 180.88196 * 9 8 7 33 33 H 1.08997 * 109.54057 * 60.78031 * 9 8 7 34 34 H 1.08996 * 109.52117 * 297.74756 * 10 9 8 35 35 H 1.09000 * 109.57124 * 177.59122 * 10 9 8 36 36 H 0.96995 * 120.00169 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.45752 * 294.17787 * 21 7 6 38 38 H 1.08997 * 109.46224 * 54.15522 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6620 2.0814 -1.2209 6 6 3.5649 1.4442 0.1258 7 7 4.0570 2.8280 0.0963 8 6 3.3514 3.6585 1.0806 9 6 3.7842 5.1179 0.9225 10 6 5.2977 5.2217 1.1306 11 6 6.0069 4.3105 0.1250 12 1 5.7880 4.6462 -0.8886 13 6 7.4943 4.3615 0.3618 14 1 8.0319 3.4599 0.6161 15 6 8.1689 5.5591 0.2536 16 7 7.5143 6.6570 -0.0557 17 14 10.0128 5.6222 0.5465 18 1 10.5083 4.2619 0.8770 19 1 10.6922 6.1117 -0.6799 20 1 10.3035 6.5432 1.6745 21 6 5.5097 2.8745 0.3062 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.0142 1.6542 -2.0138 28 1 3.8524 0.9763 1.0673 29 1 3.9986 0.8867 -0.7044 30 1 2.2764 3.5790 0.9189 31 1 3.5937 3.3148 2.0862 32 1 3.2721 5.7317 1.6635 33 1 3.5297 5.4672 -0.0781 34 1 5.5482 4.9100 2.1445 35 1 5.6176 6.2523 0.9768 36 1 7.9888 7.4996 -0.1314 37 1 5.7418 2.5344 1.3155 38 1 6.0023 2.2256 -0.4179 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397666722.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:44 Heat of formation + Delta-G solvation = -88.961419 kcal Electronic energy + Delta-G solvation = -16545.349490 eV Core-core repulsion = 13999.922627 eV Total energy + Delta-G solvation = -2545.426863 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.23291 -38.27752 -35.40081 -33.75038 -33.22278 -31.72251 -28.99502 -26.94492 -25.20752 -23.47299 -22.86614 -21.74235 -20.36037 -18.45509 -17.26855 -16.93810 -16.55287 -16.27042 -15.84523 -15.25456 -14.93511 -14.63238 -14.37045 -14.08974 -13.91868 -13.32541 -12.97244 -12.87408 -12.81354 -12.73367 -12.49203 -12.46396 -11.92445 -11.78325 -11.73464 -11.55691 -11.33874 -10.98084 -10.65469 -10.57128 -10.35555 -9.07373 -8.07974 -6.22748 1.40382 1.41690 1.53313 2.42636 3.02511 3.18844 3.69186 3.79223 4.10166 4.13838 4.24341 4.28871 4.40490 4.44886 4.60291 4.64586 4.72640 4.74097 4.87569 4.93090 4.96453 5.00253 5.11104 5.13184 5.18826 5.34471 5.40540 5.44080 5.51636 5.63124 5.96391 6.12139 6.21176 6.37311 6.46157 6.90412 6.99177 7.45391 8.97003 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.055558 B = 0.005764 C = 0.005482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.860123 B = 4856.199337 C = 5106.308243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.148 4.148 3 C 0.112 3.888 4 H 0.090 0.910 5 O -0.565 6.565 6 C 0.022 3.978 7 N -0.540 5.540 8 C 0.066 3.934 9 C -0.110 4.110 10 C -0.103 4.103 11 C 0.052 3.948 12 H -0.005 1.005 13 C -0.537 4.537 14 H 0.052 0.948 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 0.956 3.044 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.081 3.919 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.383 0.617 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.023 0.977 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.022 0.978 35 H 0.057 0.943 36 H 0.260 0.740 37 H 0.013 0.987 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.313 -11.861 1.300 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.187 4.187 3 C 0.053 3.947 4 H 0.108 0.892 5 O -0.371 6.371 6 C -0.106 4.106 7 N -0.264 5.264 8 C -0.062 4.062 9 C -0.148 4.148 10 C -0.141 4.141 11 C 0.033 3.967 12 H 0.013 0.987 13 C -0.575 4.575 14 H 0.070 0.930 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.782 3.218 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.046 4.046 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.231 0.769 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.032 0.968 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.692 -11.098 1.216 16.167 hybrid contribution 1.735 -0.242 0.534 1.831 sum -9.957 -11.340 1.750 15.192 Atomic orbital electron populations 1.21669 0.94732 1.01938 1.01942 1.22161 0.97293 0.95671 1.03540 1.21995 0.91206 0.93583 0.87941 0.89204 1.86546 1.76313 1.58257 1.16028 1.22945 0.97117 0.89378 1.01196 1.61895 1.04066 1.09986 1.50494 1.22055 0.98628 0.93187 0.92312 1.21573 0.96479 0.96051 1.00721 1.21459 0.93418 1.02035 0.97225 1.18585 0.93297 0.90719 0.94072 0.98707 1.21558 0.94151 0.94228 1.47570 0.93001 1.25748 1.02591 0.95382 0.94834 1.70052 1.36963 0.99430 1.49140 0.85538 0.80359 0.78212 0.77718 1.19095 1.20582 1.20588 1.21990 0.86730 0.98591 0.97336 0.92777 0.91648 0.93071 0.90588 0.90480 0.76900 0.94335 0.90133 0.89517 0.95867 0.91450 0.93455 0.95906 0.92462 0.93062 0.96835 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.81 71.98 0.71 -1.62 16 2 C -0.15 -2.50 5.61 30.59 0.17 -2.33 16 3 C 0.11 2.58 2.38 30.59 0.07 2.65 16 4 H 0.09 2.19 6.27 -2.38 -0.01 2.17 16 5 O -0.57 -14.57 12.72 -148.98 -1.89 -16.46 16 6 C 0.02 0.60 4.80 86.30 0.41 1.01 16 7 N -0.54 -19.88 4.61 -896.35 -4.13 -24.01 16 8 C 0.07 2.33 5.04 86.32 0.43 2.77 16 9 C -0.11 -4.52 6.09 30.65 0.19 -4.33 16 10 C -0.10 -5.15 5.03 30.68 0.15 -5.00 16 11 C 0.05 2.74 2.26 -11.49 -0.03 2.72 16 12 H -0.01 -0.32 8.14 -2.39 -0.02 -0.33 16 13 C -0.54 -30.45 8.56 25.60 0.22 -30.23 16 14 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 15 C 0.01 0.74 5.31 84.66 0.45 1.19 16 16 N -0.92 -54.39 11.36 21.45 0.24 -54.15 16 17 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 C 0.08 3.53 4.68 86.33 0.40 3.94 16 22 H 0.05 0.95 7.82 -2.39 -0.02 0.93 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.38 7.63 9.05 -74.05 -0.67 6.96 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.09 2.74 5.87 -2.39 -0.01 2.73 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 3.22 6.16 -2.39 -0.01 3.21 16 36 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 37 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.06 2.43 8.12 -2.39 -0.02 2.41 16 Total: -1.00 -63.84 296.14 -0.22 -64.06 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.34 Total: 13.44 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 3.19 Total: -29.22 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -3.89 Total: -78.16 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -1.89 Total: -16.46 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -63.84 -0.22 -64.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397666722.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.897 kcal (2) G-P(sol) polarization free energy of solvation -63.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds