Wall clock time and date at job start Sun Mar 29 2020 21:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47452 * 2 1 4 4 H 1.09004 * 109.46248 * 304.99941 * 3 2 1 5 5 O 1.42897 * 109.47136 * 64.99524 * 3 2 1 6 6 C 1.52993 * 109.47210 * 184.99877 * 3 2 1 7 7 N 1.46908 * 109.46788 * 178.38188 * 6 3 2 8 8 C 1.46845 * 110.99568 * 164.06237 * 7 6 3 9 9 C 1.53035 * 109.52336 * 185.84340 * 8 7 6 10 10 C 1.53120 * 109.27610 * 300.82248 * 9 8 7 11 11 C 1.53115 * 109.16213 * 57.65256 * 10 9 8 12 12 H 1.08998 * 109.50184 * 62.32764 * 11 10 9 13 13 C 1.50706 * 109.50466 * 182.40651 * 11 10 9 14 14 H 1.07997 * 119.99727 * 119.99666 * 13 11 10 15 15 C 1.37871 * 119.99685 * 299.99871 * 13 11 10 16 16 N 1.31516 * 120.00448 * 0.02562 * 15 13 11 17 17 Si 1.86807 * 119.99766 * 179.72449 * 15 13 11 18 18 H 1.48496 * 109.47277 * 59.99913 * 17 15 13 19 19 H 1.48506 * 109.46951 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46853 * 299.99840 * 17 15 13 21 21 C 1.46839 * 111.00039 * 288.27261 * 7 6 3 22 22 H 1.09005 * 109.47363 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47525 * 300.00355 * 1 2 3 24 24 H 1.08999 * 109.47067 * 59.99917 * 1 2 3 25 25 H 1.08998 * 109.47525 * 239.99645 * 2 1 3 26 26 H 1.09008 * 109.47102 * 119.99855 * 2 1 3 27 27 H 0.96701 * 113.99998 * 60.00498 * 5 3 2 28 28 H 1.09004 * 109.47619 * 58.38536 * 6 3 2 29 29 H 1.09000 * 109.47372 * 298.37951 * 6 3 2 30 30 H 1.09005 * 109.46658 * 65.83016 * 8 7 6 31 31 H 1.09005 * 109.45658 * 305.85130 * 8 7 6 32 32 H 1.09004 * 109.50634 * 180.88233 * 9 8 7 33 33 H 1.08996 * 109.50738 * 60.75833 * 9 8 7 34 34 H 1.09008 * 109.51992 * 297.74619 * 10 9 8 35 35 H 1.09005 * 109.57883 * 177.59158 * 10 9 8 36 36 H 0.96996 * 119.99871 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.46103 * 54.14694 * 21 7 6 38 38 H 1.09003 * 109.46613 * 294.17338 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6619 2.0814 1.2210 6 6 3.5648 1.4443 -0.1257 7 7 4.0512 2.8299 -0.1647 8 6 5.4956 2.8880 0.0941 9 6 5.9396 4.3493 0.1902 10 6 5.6079 5.0658 -1.1217 11 6 4.1054 4.9489 -1.3922 12 1 3.5524 5.4452 -0.5948 13 6 3.7794 5.6006 -2.7115 14 1 3.3348 5.0192 -3.5056 15 6 4.0490 6.9388 -2.9045 16 7 4.5910 7.6466 -1.9376 17 14 3.6521 7.7448 -4.5423 18 1 2.1961 7.6298 -4.8107 19 1 4.0354 9.1787 -4.4942 20 1 4.4101 7.0664 -5.6243 21 6 3.7145 3.4701 -1.4425 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.0141 1.6543 2.0139 28 1 3.8544 0.9316 -1.0430 29 1 4.0006 0.9302 0.7310 30 1 6.0304 2.3988 -0.7201 31 1 5.7172 2.3786 1.0320 32 1 7.0144 4.3923 0.3667 33 1 5.4154 4.8356 1.0129 34 1 6.1622 4.6043 -1.9390 35 1 5.8831 6.1176 -1.0432 36 1 4.7810 8.5880 -2.0736 37 1 2.6427 3.3836 -1.6207 38 1 4.2577 2.9782 -2.2495 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397666723.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:47 Heat of formation + Delta-G solvation = -70.030160 kcal Electronic energy + Delta-G solvation = -16599.907871 eV Core-core repulsion = 14055.301929 eV Total energy + Delta-G solvation = -2544.605942 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.69647 -36.96218 -33.55446 -32.66450 -31.60619 -29.82171 -27.73547 -24.92606 -23.86079 -21.88886 -21.17450 -20.75936 -18.55432 -16.46300 -15.96178 -15.69108 -14.98829 -14.61850 -14.44063 -14.01932 -13.32891 -12.92535 -12.83719 -12.45616 -12.34857 -11.98030 -11.92728 -11.50863 -11.33119 -10.97361 -10.89719 -10.73613 -10.62640 -10.48217 -10.06431 -9.79163 -9.64229 -9.39399 -8.95828 -8.64120 -8.24868 -7.56651 -5.92305 -3.98452 3.35239 3.39768 3.42174 4.28579 4.49511 4.76489 4.96096 5.12072 5.18739 5.37377 5.40353 5.58661 5.69776 5.77614 5.81496 5.87356 5.92425 5.93074 6.10714 6.24529 6.28317 6.36060 6.44940 6.56985 6.75823 6.80515 7.03754 7.27607 7.45074 7.71345 7.79481 7.86411 8.01263 8.15889 8.23633 8.53724 9.05459 9.65404 11.13708 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029015 B = 0.007114 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.797948 B = 3934.733425 C = 4572.538375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.155 4.155 3 C 0.111 3.889 4 H 0.099 0.901 5 O -0.543 6.543 6 C 0.023 3.977 7 N -0.529 5.529 8 C 0.064 3.936 9 C -0.117 4.117 10 C -0.111 4.111 11 C 0.055 3.945 12 H 0.035 0.965 13 C -0.515 4.515 14 H 0.052 0.948 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.279 1.279 21 C 0.068 3.932 22 H 0.048 0.952 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.364 0.636 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.020 0.980 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.028 0.972 35 H 0.091 0.909 36 H 0.260 0.740 37 H 0.059 0.941 38 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.941 -13.246 4.761 14.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.194 4.194 3 C 0.051 3.949 4 H 0.117 0.883 5 O -0.346 6.346 6 C -0.106 4.106 7 N -0.253 5.253 8 C -0.064 4.064 9 C -0.155 4.155 10 C -0.149 4.149 11 C 0.036 3.964 12 H 0.054 0.946 13 C -0.554 4.554 14 H 0.070 0.930 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.059 4.059 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.210 0.790 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -2.415 -12.390 4.751 13.488 hybrid contribution 0.626 -0.477 -1.284 1.506 sum -1.789 -12.867 3.467 13.446 Atomic orbital electron populations 1.21683 0.95202 1.00959 1.02610 1.22235 0.97100 0.97796 1.02227 1.21964 0.92857 0.91563 0.88490 0.88304 1.86657 1.75973 1.57127 1.14889 1.22790 0.96324 0.91250 1.00202 1.61926 1.13834 1.13943 1.35579 1.22029 0.87766 0.98193 0.98408 1.21668 0.98353 0.94281 1.01168 1.21655 0.99082 1.01777 0.92358 1.18648 0.92437 0.88319 0.96951 0.94650 1.21119 1.40758 0.94495 0.98981 0.92989 1.24927 0.95154 0.97260 0.96459 1.69883 1.43177 1.07786 1.31888 0.86702 0.78786 0.78314 0.84418 1.20310 1.21305 1.20436 1.22336 0.99100 0.98066 0.86387 0.93246 0.92025 0.92674 0.91451 0.91976 0.79014 0.94891 0.91624 0.96192 0.92657 0.93634 0.92018 0.95304 0.89101 0.93035 0.92268 0.96626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.81 37.15 0.36 -1.18 16 2 C -0.16 -1.67 5.61 -26.73 -0.15 -1.82 16 3 C 0.11 1.56 2.98 -26.73 -0.08 1.48 16 4 H 0.10 1.61 6.59 -51.93 -0.34 1.26 16 5 O -0.54 -8.23 12.77 -35.23 -0.45 -8.68 16 6 C 0.02 0.35 4.63 -3.82 -0.02 0.33 16 7 N -0.53 -10.02 4.51 -234.67 -1.06 -11.08 16 8 C 0.06 1.15 5.44 -3.84 -0.02 1.13 16 9 C -0.12 -2.35 6.09 -26.65 -0.16 -2.52 16 10 C -0.11 -2.69 5.02 -26.61 -0.13 -2.83 16 11 C 0.06 1.43 2.26 -91.69 -0.21 1.22 16 12 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 13 C -0.51 -14.45 8.56 -34.44 -0.29 -14.74 16 14 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 16 N -0.89 -25.84 11.35 55.43 0.63 -25.21 16 17 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.07 1.49 4.53 -3.84 -0.02 1.48 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.68 7.82 -51.93 -0.41 0.27 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.36 4.11 9.05 45.56 0.41 4.52 16 28 H 0.03 0.49 8.06 -51.93 -0.42 0.07 16 29 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.87 7.96 -51.93 -0.41 0.45 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.03 0.70 8.14 -51.92 -0.42 0.27 16 35 H 0.09 2.46 6.15 -51.93 -0.32 2.14 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.06 1.30 6.46 -51.93 -0.34 0.97 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 297.16 15.07 4.48 4.48 Total: -1.00 -29.83 297.16 -8.24 -38.07 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.00 Total: 1.60 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -0.81 Total: -15.76 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.43 Total: -36.29 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.45 Total: -8.68 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.83 -8.24 -38.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397666723.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.961 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds