Wall clock time and date at job start Sun Mar 29 2020 21:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47452 * 2 1 4 4 H 1.09004 * 109.46248 * 304.99941 * 3 2 1 5 5 O 1.42897 * 109.47136 * 64.99524 * 3 2 1 6 6 C 1.52993 * 109.47210 * 184.99877 * 3 2 1 7 7 N 1.46908 * 109.46788 * 178.38188 * 6 3 2 8 8 C 1.46845 * 110.99568 * 164.06237 * 7 6 3 9 9 C 1.53035 * 109.52336 * 185.84340 * 8 7 6 10 10 C 1.53120 * 109.27610 * 300.82248 * 9 8 7 11 11 C 1.53115 * 109.16213 * 57.65256 * 10 9 8 12 12 H 1.08998 * 109.50184 * 62.32764 * 11 10 9 13 13 C 1.50706 * 109.50466 * 182.40651 * 11 10 9 14 14 H 1.07997 * 119.99727 * 119.99666 * 13 11 10 15 15 C 1.37871 * 119.99685 * 299.99871 * 13 11 10 16 16 N 1.31516 * 120.00448 * 0.02562 * 15 13 11 17 17 Si 1.86807 * 119.99766 * 179.72449 * 15 13 11 18 18 H 1.48496 * 109.47277 * 59.99913 * 17 15 13 19 19 H 1.48506 * 109.46951 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46853 * 299.99840 * 17 15 13 21 21 C 1.46839 * 111.00039 * 288.27261 * 7 6 3 22 22 H 1.09005 * 109.47363 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47525 * 300.00355 * 1 2 3 24 24 H 1.08999 * 109.47067 * 59.99917 * 1 2 3 25 25 H 1.08998 * 109.47525 * 239.99645 * 2 1 3 26 26 H 1.09008 * 109.47102 * 119.99855 * 2 1 3 27 27 H 0.96701 * 113.99998 * 60.00498 * 5 3 2 28 28 H 1.09004 * 109.47619 * 58.38536 * 6 3 2 29 29 H 1.09000 * 109.47372 * 298.37951 * 6 3 2 30 30 H 1.09005 * 109.46658 * 65.83016 * 8 7 6 31 31 H 1.09005 * 109.45658 * 305.85130 * 8 7 6 32 32 H 1.09004 * 109.50634 * 180.88233 * 9 8 7 33 33 H 1.08996 * 109.50738 * 60.75833 * 9 8 7 34 34 H 1.09008 * 109.51992 * 297.74619 * 10 9 8 35 35 H 1.09005 * 109.57883 * 177.59158 * 10 9 8 36 36 H 0.96996 * 119.99871 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.46103 * 54.14694 * 21 7 6 38 38 H 1.09003 * 109.46613 * 294.17338 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6619 2.0814 1.2210 6 6 3.5648 1.4443 -0.1257 7 7 4.0512 2.8299 -0.1647 8 6 5.4956 2.8880 0.0941 9 6 5.9396 4.3493 0.1902 10 6 5.6079 5.0658 -1.1217 11 6 4.1054 4.9489 -1.3922 12 1 3.5524 5.4452 -0.5948 13 6 3.7794 5.6006 -2.7115 14 1 3.3348 5.0192 -3.5056 15 6 4.0490 6.9388 -2.9045 16 7 4.5910 7.6466 -1.9376 17 14 3.6521 7.7448 -4.5423 18 1 2.1961 7.6298 -4.8107 19 1 4.0354 9.1787 -4.4942 20 1 4.4101 7.0664 -5.6243 21 6 3.7145 3.4701 -1.4425 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.0141 1.6543 2.0139 28 1 3.8544 0.9316 -1.0430 29 1 4.0006 0.9302 0.7310 30 1 6.0304 2.3988 -0.7201 31 1 5.7172 2.3786 1.0320 32 1 7.0144 4.3923 0.3667 33 1 5.4154 4.8356 1.0129 34 1 6.1622 4.6043 -1.9390 35 1 5.8831 6.1176 -1.0432 36 1 4.7810 8.5880 -2.0736 37 1 2.6427 3.3836 -1.6207 38 1 4.2577 2.9782 -2.2495 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397666723.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:46 Heat of formation + Delta-G solvation = -91.169522 kcal Electronic energy + Delta-G solvation = -16600.824543 eV Core-core repulsion = 14055.301929 eV Total energy + Delta-G solvation = -2545.522614 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.13330 -38.30205 -35.42931 -33.78074 -33.20332 -31.69461 -28.98597 -26.96693 -25.21780 -23.32168 -22.77071 -21.95893 -20.35194 -18.45722 -17.18189 -17.03209 -16.51642 -16.24756 -15.79211 -15.42199 -14.88774 -14.56819 -14.24998 -14.12451 -13.90182 -13.38938 -12.97285 -12.87071 -12.82604 -12.72410 -12.55564 -12.39451 -11.86224 -11.78667 -11.78497 -11.54975 -11.35154 -10.96155 -10.74643 -10.52284 -10.37594 -9.05107 -8.08202 -6.23038 1.40143 1.42046 1.49667 2.42162 3.02063 3.18231 3.73882 3.82030 4.12671 4.19763 4.25355 4.28766 4.33304 4.51330 4.56122 4.66090 4.73613 4.76569 4.87108 4.89385 4.97651 5.01364 5.10018 5.11629 5.19517 5.35077 5.41311 5.43186 5.51906 5.62335 5.96594 6.13781 6.21265 6.39804 6.46221 6.89656 7.07447 7.44757 8.96405 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029015 B = 0.007114 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.797948 B = 3934.733425 C = 4572.538375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.112 3.888 4 H 0.067 0.933 5 O -0.567 6.567 6 C 0.025 3.975 7 N -0.543 5.543 8 C 0.067 3.933 9 C -0.111 4.111 10 C -0.104 4.104 11 C 0.053 3.947 12 H -0.009 1.009 13 C -0.540 4.540 14 H 0.050 0.950 15 C 0.014 3.986 16 N -0.916 5.916 17 Si 0.955 3.045 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.270 1.270 21 C 0.084 3.916 22 H 0.069 0.931 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.381 0.619 28 H 0.040 0.960 29 H 0.096 0.904 30 H 0.025 0.975 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.022 0.978 35 H 0.057 0.943 36 H 0.261 0.739 37 H 0.050 0.950 38 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 -15.280 4.944 16.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C 0.052 3.948 4 H 0.085 0.915 5 O -0.373 6.373 6 C -0.103 4.103 7 N -0.267 5.267 8 C -0.061 4.061 9 C -0.149 4.149 10 C -0.142 4.142 11 C 0.034 3.966 12 H 0.009 0.991 13 C -0.578 4.578 14 H 0.068 0.932 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.780 3.220 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.195 1.195 21 C -0.043 4.043 22 H 0.087 0.913 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.230 0.770 28 H 0.058 0.942 29 H 0.115 0.885 30 H 0.044 0.956 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -2.082 -14.449 4.947 15.414 hybrid contribution 0.505 0.165 -1.287 1.393 sum -1.577 -14.284 3.660 14.829 Atomic orbital electron populations 1.21685 0.95239 1.01931 1.01632 1.22139 0.96978 0.95397 1.03759 1.21901 0.92347 0.93206 0.87297 0.91469 1.86617 1.76451 1.58254 1.15959 1.22908 0.96731 0.88868 1.01826 1.61849 1.14757 1.16705 1.33390 1.22052 0.87078 0.96560 1.00409 1.21585 0.99905 0.95493 0.97895 1.21460 0.97805 1.00302 0.94657 1.18568 0.92988 0.90539 0.94514 0.99057 1.21508 1.41075 0.95264 0.99963 0.93176 1.25741 0.94917 0.97842 1.00012 1.70036 1.43766 1.07948 1.33757 0.85666 0.78754 0.77390 0.80164 1.19736 1.20736 1.19526 1.21947 0.98439 0.95792 0.88151 0.91250 0.92833 0.93904 0.90519 0.89703 0.77043 0.94204 0.88532 0.95642 0.89018 0.91090 0.93354 0.95906 0.92457 0.93026 0.93133 0.96924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.81 71.98 0.71 -2.13 16 2 C -0.14 -2.72 5.61 30.59 0.17 -2.55 16 3 C 0.11 3.00 2.98 30.59 0.09 3.09 16 4 H 0.07 2.21 6.59 -2.38 -0.02 2.20 16 5 O -0.57 -16.48 12.77 -148.98 -1.90 -18.38 16 6 C 0.02 0.67 4.63 86.30 0.40 1.07 16 7 N -0.54 -19.86 4.51 -896.35 -4.04 -23.90 16 8 C 0.07 2.23 5.44 86.33 0.47 2.70 16 9 C -0.11 -4.38 6.09 30.65 0.19 -4.19 16 10 C -0.10 -5.18 5.02 30.67 0.15 -5.02 16 11 C 0.05 2.83 2.26 -11.49 -0.03 2.80 16 12 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 13 C -0.54 -31.19 8.56 25.60 0.22 -30.97 16 14 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 15 C 0.01 0.78 5.30 84.65 0.45 1.23 16 16 N -0.92 -54.88 11.35 21.45 0.24 -54.64 16 17 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 21 C 0.08 3.75 4.53 86.33 0.39 4.14 16 22 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 23 H 0.05 1.11 7.82 -2.39 -0.02 1.09 16 24 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.08 1.24 8.14 -2.38 -0.02 1.23 16 27 H 0.38 7.73 9.05 -74.06 -0.67 7.06 16 28 H 0.04 1.05 8.06 -2.38 -0.02 1.04 16 29 H 0.10 2.06 7.87 -2.39 -0.02 2.04 16 30 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.09 2.47 7.96 -2.38 -0.02 2.45 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.06 3.22 6.15 -2.38 -0.01 3.20 16 36 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 37 H 0.05 2.29 6.46 -2.39 -0.02 2.28 16 38 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -66.29 297.16 -0.12 -66.40 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.34 Total: 13.45 kcal Atomic # 6 Polarization: -33.04 SS G_CDS: 3.21 Total: -29.83 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -3.80 Total: -78.54 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -1.90 Total: -18.38 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -66.29 -0.12 -66.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397666723.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.765 kcal (2) G-P(sol) polarization free energy of solvation -66.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds