Wall clock time and date at job start Sun Mar 29 2020 21:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47059 * 2 1 4 4 H 1.08998 * 109.50590 * 305.07595 * 3 2 1 5 5 C 1.53102 * 109.50679 * 184.99964 * 3 2 1 6 6 N 1.47016 * 109.29066 * 296.88770 * 5 3 2 7 7 C 1.46902 * 110.99952 * 177.62891 * 6 5 3 8 8 C 1.50690 * 109.47332 * 64.47296 * 7 6 5 9 9 H 1.08002 * 119.99861 * 4.81017 * 8 7 6 10 10 C 1.37875 * 120.00494 * 184.81251 * 8 7 6 11 11 N 1.31513 * 119.99743 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00478 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47091 * 89.99890 * 12 10 8 14 14 H 1.48501 * 109.47408 * 210.00166 * 12 10 8 15 15 H 1.48498 * 109.47020 * 330.00497 * 12 10 8 16 16 C 1.47018 * 110.75372 * 301.45059 * 6 5 3 17 17 C 1.53097 * 109.29189 * 58.55050 * 16 6 5 18 18 H 1.08993 * 109.54372 * 63.12803 * 17 16 6 19 19 C 1.52995 * 109.50502 * 183.24238 * 17 16 6 20 20 C 1.53002 * 109.47093 * 184.78167 * 19 17 16 21 21 O 1.43014 * 109.51104 * 65.21397 * 3 2 1 22 22 H 1.09000 * 109.46606 * 60.00368 * 1 2 3 23 23 H 1.09003 * 109.47073 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46918 * 300.00502 * 1 2 3 25 25 H 1.08991 * 109.47418 * 239.99259 * 2 1 3 26 26 H 1.09008 * 109.46934 * 119.99639 * 2 1 3 27 27 H 1.09003 * 109.50973 * 56.84019 * 5 3 2 28 28 H 1.08991 * 109.50855 * 176.93138 * 5 3 2 29 29 H 1.08998 * 109.47066 * 184.47411 * 7 6 5 30 30 H 1.09008 * 109.46947 * 304.47245 * 7 6 5 31 31 H 0.97004 * 120.00407 * 180.02562 * 11 10 8 32 32 H 1.09003 * 109.46892 * 298.61556 * 16 6 5 33 33 H 1.08999 * 109.54326 * 178.52810 * 16 6 5 34 34 H 1.08996 * 109.47120 * 304.77742 * 19 17 16 35 35 H 1.08996 * 109.47450 * 64.78026 * 19 17 16 36 36 H 1.09005 * 109.47063 * 299.99743 * 20 19 17 37 37 H 1.08996 * 109.47088 * 59.99637 * 20 19 17 38 38 H 1.09000 * 109.47181 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9824 -0.8408 5 6 3.5658 1.4453 -0.1258 6 7 4.1512 0.7829 1.0490 7 6 5.6146 0.7147 0.9401 8 6 6.1849 2.1094 0.9523 9 1 5.5348 2.9572 1.1108 10 6 7.5365 2.3034 0.7611 11 7 8.3280 1.2711 0.5676 12 14 8.2433 4.0324 0.7756 13 1 8.6398 4.3935 2.1603 14 1 9.4335 4.0881 -0.1107 15 1 7.2183 4.9902 0.2886 16 6 3.7454 1.4639 2.2871 17 6 2.2178 1.4609 2.3886 18 1 1.8590 0.4341 2.4585 19 6 1.7870 2.2385 3.6338 20 6 0.2697 2.1347 3.8004 21 8 1.6664 2.0812 1.2238 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5139 -0.8898 26 1 1.8933 -0.5138 0.8901 27 1 3.8576 0.9092 -1.0289 28 1 3.9246 2.4730 -0.1806 29 1 6.0157 0.1508 1.7822 30 1 5.8869 0.2189 0.0082 31 1 9.2789 1.4074 0.4334 32 1 4.1071 2.4920 2.2716 33 1 4.1682 0.9422 3.1456 34 1 2.2784 1.8195 4.5119 35 1 2.0698 3.2855 3.5243 36 1 -0.2218 2.5538 2.9223 37 1 -0.0130 1.0878 3.9099 38 1 -0.0372 2.6884 4.6878 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398474975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:15 Heat of formation + Delta-G solvation = -62.262135 kcal Electronic energy + Delta-G solvation = -16967.796027 eV Core-core repulsion = 14423.526931 eV Total energy + Delta-G solvation = -2544.269095 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.49411 -35.32678 -34.32395 -32.38680 -32.12063 -28.92576 -27.95582 -25.32501 -23.53849 -22.94204 -21.73061 -20.46997 -18.80454 -16.52381 -16.17461 -15.68115 -14.59777 -14.45932 -14.36099 -13.89330 -13.55941 -13.22895 -12.95794 -12.71063 -12.33018 -11.90154 -11.63347 -11.54286 -11.28296 -11.06867 -10.92628 -10.83363 -10.75230 -10.62191 -10.41276 -10.18030 -10.03763 -9.74073 -9.50585 -8.83221 -8.45360 -7.20157 -6.04894 -4.14079 3.25988 3.32902 3.36431 4.19346 4.39083 4.88360 5.16343 5.24384 5.29111 5.35532 5.41775 5.45859 5.50154 5.74749 5.83566 5.85973 5.96015 6.03550 6.10695 6.11376 6.19816 6.23853 6.32481 6.38531 6.45668 6.61196 6.70904 6.74562 6.82692 7.22107 7.49588 7.73305 7.87059 7.99924 8.21634 8.27173 8.96087 9.52946 11.00218 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031319 B = 0.007771 C = 0.006922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.811962 B = 3602.243525 C = 4044.221627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.093 3.907 4 H 0.093 0.907 5 C 0.032 3.968 6 N -0.537 5.537 7 C 0.187 3.813 8 C -0.550 4.550 9 H 0.058 0.942 10 C 0.065 3.935 11 N -0.891 5.891 12 Si 0.889 3.111 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.032 3.968 17 C 0.090 3.910 18 H 0.060 0.940 19 C -0.116 4.116 20 C -0.145 4.145 21 O -0.378 6.378 22 H 0.047 0.953 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.028 0.972 30 H 0.034 0.966 31 H 0.262 0.738 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.634 -0.555 2.068 13.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C 0.035 3.965 4 H 0.110 0.890 5 C -0.097 4.097 6 N -0.261 5.261 7 C 0.061 3.939 8 C -0.589 4.589 9 H 0.076 0.924 10 C -0.138 4.138 11 N -0.530 5.530 12 Si 0.717 3.283 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.200 1.200 16 C -0.097 4.097 17 C 0.032 3.968 18 H 0.078 0.922 19 C -0.154 4.154 20 C -0.203 4.203 21 O -0.298 6.298 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.734 -0.941 2.052 13.918 hybrid contribution 1.218 1.563 -0.115 1.985 sum -12.516 0.622 1.937 12.680 Atomic orbital electron populations 1.21729 0.96354 1.00667 1.01659 1.21994 0.95169 0.97672 1.03436 1.22322 0.94515 0.92896 0.86758 0.88963 1.22539 0.92885 0.99094 0.95152 1.62736 1.13448 1.49481 1.00408 1.19757 0.80324 0.95943 0.97872 1.21754 0.93272 0.93819 1.50067 0.92437 1.24960 0.97161 0.96771 0.94868 1.69943 1.04659 1.29649 1.48718 0.86644 0.78723 0.84969 0.78005 1.20596 1.21101 1.19950 1.22566 0.93594 0.99117 0.94429 1.22227 0.93123 0.96078 0.85387 0.92188 1.21510 0.96427 1.01219 0.96218 1.21689 0.96005 1.01209 1.01348 1.87922 1.72556 1.55384 1.13893 0.93347 0.93463 0.92553 0.91556 0.90409 0.90982 0.93491 0.95350 0.94758 0.92794 0.93386 0.91124 0.90865 0.91397 0.92139 0.93172 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.81 37.16 0.36 -1.45 16 2 C -0.15 -2.12 5.04 -26.73 -0.13 -2.25 16 3 C 0.09 1.53 3.30 -26.68 -0.09 1.44 16 4 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 5 C 0.03 0.64 4.78 -3.71 -0.02 0.62 16 6 N -0.54 -11.54 4.40 -235.75 -1.04 -12.58 16 7 C 0.19 4.82 5.15 -4.98 -0.03 4.79 16 8 C -0.55 -15.21 7.65 -34.45 -0.26 -15.48 16 9 H 0.06 1.60 5.81 -52.49 -0.30 1.29 16 10 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 11 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 12 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 16 C 0.03 0.63 4.58 -3.71 -0.02 0.61 16 17 C 0.09 1.47 2.41 -26.68 -0.06 1.41 16 18 H 0.06 0.97 6.38 -51.93 -0.33 0.64 16 19 C -0.12 -1.61 5.65 -26.73 -0.15 -1.76 16 20 C -0.15 -1.73 9.81 37.16 0.36 -1.36 16 21 O -0.38 -6.52 9.37 -35.23 -0.33 -6.85 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.72 7.83 -51.93 -0.41 0.31 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.08 1.25 6.02 -51.92 -0.31 0.93 16 27 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 28 H 0.05 1.04 6.93 -51.93 -0.36 0.68 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.95 8.13 -51.92 -0.42 0.53 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.05 1.06 6.42 -51.93 -0.33 0.73 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.77 7.82 -51.93 -0.41 0.36 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 294.75 15.07 4.44 4.44 Total: -1.00 -28.88 294.75 -8.00 -36.88 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.66 Total: -1.25 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -0.13 Total: -11.68 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -0.30 Total: -38.11 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.33 Total: -6.85 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.88 -8.00 -36.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398474975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.382 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds