Wall clock time and date at job start Sun Mar 29 2020 21:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47059 * 2 1 4 4 H 1.08998 * 109.50590 * 305.07595 * 3 2 1 5 5 C 1.53102 * 109.50679 * 184.99964 * 3 2 1 6 6 N 1.47016 * 109.29066 * 296.88770 * 5 3 2 7 7 C 1.46902 * 110.99952 * 177.62891 * 6 5 3 8 8 C 1.50690 * 109.47332 * 64.47296 * 7 6 5 9 9 H 1.08002 * 119.99861 * 4.81017 * 8 7 6 10 10 C 1.37875 * 120.00494 * 184.81251 * 8 7 6 11 11 N 1.31513 * 119.99743 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00478 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47091 * 89.99890 * 12 10 8 14 14 H 1.48501 * 109.47408 * 210.00166 * 12 10 8 15 15 H 1.48498 * 109.47020 * 330.00497 * 12 10 8 16 16 C 1.47018 * 110.75372 * 301.45059 * 6 5 3 17 17 C 1.53097 * 109.29189 * 58.55050 * 16 6 5 18 18 H 1.08993 * 109.54372 * 63.12803 * 17 16 6 19 19 C 1.52995 * 109.50502 * 183.24238 * 17 16 6 20 20 C 1.53002 * 109.47093 * 184.78167 * 19 17 16 21 21 O 1.43014 * 109.51104 * 65.21397 * 3 2 1 22 22 H 1.09000 * 109.46606 * 60.00368 * 1 2 3 23 23 H 1.09003 * 109.47073 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46918 * 300.00502 * 1 2 3 25 25 H 1.08991 * 109.47418 * 239.99259 * 2 1 3 26 26 H 1.09008 * 109.46934 * 119.99639 * 2 1 3 27 27 H 1.09003 * 109.50973 * 56.84019 * 5 3 2 28 28 H 1.08991 * 109.50855 * 176.93138 * 5 3 2 29 29 H 1.08998 * 109.47066 * 184.47411 * 7 6 5 30 30 H 1.09008 * 109.46947 * 304.47245 * 7 6 5 31 31 H 0.97004 * 120.00407 * 180.02562 * 11 10 8 32 32 H 1.09003 * 109.46892 * 298.61556 * 16 6 5 33 33 H 1.08999 * 109.54326 * 178.52810 * 16 6 5 34 34 H 1.08996 * 109.47120 * 304.77742 * 19 17 16 35 35 H 1.08996 * 109.47450 * 64.78026 * 19 17 16 36 36 H 1.09005 * 109.47063 * 299.99743 * 20 19 17 37 37 H 1.08996 * 109.47088 * 59.99637 * 20 19 17 38 38 H 1.09000 * 109.47181 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9824 -0.8408 5 6 3.5658 1.4453 -0.1258 6 7 4.1512 0.7829 1.0490 7 6 5.6146 0.7147 0.9401 8 6 6.1849 2.1094 0.9523 9 1 5.5348 2.9572 1.1108 10 6 7.5365 2.3034 0.7611 11 7 8.3280 1.2711 0.5676 12 14 8.2433 4.0324 0.7756 13 1 8.6398 4.3935 2.1603 14 1 9.4335 4.0881 -0.1107 15 1 7.2183 4.9902 0.2886 16 6 3.7454 1.4639 2.2871 17 6 2.2178 1.4609 2.3886 18 1 1.8590 0.4341 2.4585 19 6 1.7870 2.2385 3.6338 20 6 0.2697 2.1347 3.8004 21 8 1.6664 2.0812 1.2238 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5139 -0.8898 26 1 1.8933 -0.5138 0.8901 27 1 3.8576 0.9092 -1.0289 28 1 3.9246 2.4730 -0.1806 29 1 6.0157 0.1508 1.7822 30 1 5.8869 0.2189 0.0082 31 1 9.2789 1.4074 0.4334 32 1 4.1071 2.4920 2.2716 33 1 4.1682 0.9422 3.1456 34 1 2.2784 1.8195 4.5119 35 1 2.0698 3.2855 3.5243 36 1 -0.2218 2.5538 2.9223 37 1 -0.0130 1.0878 3.9099 38 1 -0.0372 2.6884 4.6878 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398474975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:14 Heat of formation + Delta-G solvation = -80.496939 kcal Electronic energy + Delta-G solvation = -16968.586747 eV Core-core repulsion = 14423.526931 eV Total energy + Delta-G solvation = -2545.059816 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.96680 -37.08631 -35.53519 -34.47686 -33.29651 -30.25138 -29.79984 -27.11245 -24.92386 -24.55864 -23.07833 -21.98851 -20.29132 -18.59849 -17.56428 -17.22060 -16.48881 -16.06961 -15.69721 -15.50228 -14.84308 -14.66646 -14.41823 -13.95737 -13.87140 -13.45850 -13.20683 -13.03728 -12.73021 -12.66087 -12.53995 -12.50266 -12.11251 -11.90536 -11.85671 -11.78854 -11.73917 -11.52743 -10.95506 -10.65407 -10.31386 -9.08590 -8.20605 -6.40376 1.33008 1.33420 1.44303 2.33157 2.86431 3.04009 3.25128 3.91422 3.93696 4.12038 4.21374 4.26176 4.33168 4.47714 4.49213 4.60305 4.72811 4.79746 4.84110 4.90891 5.01229 5.08154 5.12781 5.14765 5.18475 5.21021 5.26248 5.32536 5.41160 5.48274 5.57758 5.68927 5.97333 6.16379 6.34765 6.42504 6.79249 7.31098 8.82039 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031319 B = 0.007771 C = 0.006922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.811962 B = 3602.243525 C = 4044.221627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.139 4.139 3 C 0.097 3.903 4 H 0.114 0.886 5 C 0.033 3.967 6 N -0.532 5.532 7 C 0.199 3.801 8 C -0.559 4.559 9 H 0.052 0.948 10 C 0.014 3.986 11 N -0.924 5.924 12 Si 0.957 3.043 13 H -0.272 1.272 14 H -0.278 1.278 15 H -0.271 1.271 16 C 0.033 3.967 17 C 0.098 3.902 18 H 0.070 0.930 19 C -0.115 4.115 20 C -0.138 4.138 21 O -0.383 6.383 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.018 0.982 29 H 0.005 0.995 30 H 0.009 0.991 31 H 0.266 0.734 32 H 0.021 0.979 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.338 0.068 2.372 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.177 4.177 3 C 0.040 3.960 4 H 0.132 0.868 5 C -0.096 4.096 6 N -0.255 5.255 7 C 0.073 3.927 8 C -0.598 4.598 9 H 0.070 0.930 10 C -0.186 4.186 11 N -0.564 5.564 12 Si 0.782 3.218 13 H -0.197 1.197 14 H -0.203 1.203 15 H -0.196 1.196 16 C -0.096 4.096 17 C 0.040 3.960 18 H 0.088 0.912 19 C -0.153 4.153 20 C -0.195 4.195 21 O -0.302 6.302 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.036 0.964 29 H 0.023 0.977 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.460 -0.318 2.360 15.642 hybrid contribution 1.757 1.332 -0.219 2.215 sum -13.703 1.014 2.141 13.906 Atomic orbital electron populations 1.21662 0.94052 1.01845 1.02081 1.21926 0.97064 0.95796 1.02927 1.22390 0.91612 0.94734 0.87302 0.86843 1.22609 0.95666 0.96961 0.94373 1.62667 1.10713 1.50229 1.01937 1.19424 0.83143 0.94706 0.95444 1.21941 0.93611 0.94298 1.49964 0.93000 1.25798 0.97537 1.00895 0.94389 1.70054 1.05084 1.31821 1.49419 0.85576 0.77988 0.79885 0.78385 1.19720 1.20282 1.19611 1.22642 0.96488 0.97045 0.93427 1.22241 0.90134 0.97231 0.86352 0.91233 1.21546 0.98303 1.00217 0.95197 1.21632 0.93889 1.02148 1.01880 1.87930 1.72192 1.55872 1.14205 0.92170 0.91948 0.92865 0.91119 0.91932 0.91126 0.96391 0.97674 0.97277 0.92467 0.96095 0.91311 0.89586 0.92355 0.92892 0.92201 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.81 71.98 0.71 -2.30 16 2 C -0.14 -3.81 5.04 30.59 0.15 -3.65 16 3 C 0.10 3.08 3.30 30.63 0.10 3.18 16 4 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 5 C 0.03 1.32 4.78 86.32 0.41 1.73 16 6 N -0.53 -23.45 4.40 -899.76 -3.96 -27.41 16 7 C 0.20 10.74 5.15 85.55 0.44 11.18 16 8 C -0.56 -31.80 7.65 25.60 0.20 -31.60 16 9 H 0.05 2.96 5.81 -2.91 -0.02 2.95 16 10 C 0.01 0.77 5.46 84.65 0.46 1.23 16 11 N -0.92 -55.49 13.29 21.45 0.28 -55.20 16 12 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 15 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 16 C 0.03 1.32 4.58 86.31 0.40 1.72 16 17 C 0.10 3.12 2.41 30.62 0.07 3.20 16 18 H 0.07 2.12 6.38 -2.39 -0.02 2.11 16 19 C -0.11 -2.99 5.65 30.59 0.17 -2.82 16 20 C -0.14 -2.91 9.81 71.98 0.71 -2.20 16 21 O -0.38 -12.66 9.37 -148.98 -1.40 -14.06 16 22 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.05 1.19 7.83 -2.39 -0.02 1.17 16 25 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.06 1.91 6.02 -2.38 -0.01 1.89 16 27 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.02 0.82 6.93 -2.39 -0.02 0.80 16 29 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.01 0.53 8.13 -2.38 -0.02 0.51 16 31 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.02 0.95 6.42 -2.39 -0.02 0.93 16 33 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.20 7.82 -2.38 -0.02 1.18 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -62.50 294.75 1.78 -60.72 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.00 Total: 9.60 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 3.82 Total: -20.34 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -3.67 Total: -82.61 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -1.40 Total: -14.06 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -62.50 1.78 -60.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398474975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.776 kcal (2) G-P(sol) polarization free energy of solvation -62.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds