Wall clock time and date at job start Sun Mar 29 2020 21:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52993 * 109.47523 * 2 1 4 4 H 1.09003 * 109.54089 * 54.89048 * 3 2 1 5 5 C 1.53094 * 109.50890 * 175.00234 * 3 2 1 6 6 N 1.47020 * 109.25656 * 176.78310 * 5 3 2 7 7 C 1.46901 * 110.99736 * 177.60779 * 6 5 3 8 8 C 1.50693 * 109.47240 * 64.48163 * 7 6 5 9 9 H 1.07995 * 120.00140 * 4.85891 * 8 7 6 10 10 C 1.37881 * 119.99955 * 184.85789 * 8 7 6 11 11 N 1.31517 * 120.00047 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00180 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46535 * 90.00291 * 12 10 8 14 14 H 1.48495 * 109.47190 * 210.00012 * 12 10 8 15 15 H 1.48500 * 109.47118 * 330.00743 * 12 10 8 16 16 C 1.47013 * 110.75418 * 301.38343 * 6 5 3 17 17 C 1.53092 * 109.25557 * 58.61868 * 16 6 5 18 18 H 1.09008 * 109.50615 * 183.21432 * 17 16 6 19 19 C 1.53002 * 109.50992 * 63.12878 * 17 16 6 20 20 C 1.53001 * 109.47098 * 174.99757 * 19 17 16 21 21 O 1.43017 * 109.25954 * 303.14738 * 17 16 6 22 22 H 1.08999 * 109.47361 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47063 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.47568 * 59.99898 * 1 2 3 25 25 H 1.09010 * 109.46938 * 240.00077 * 2 1 3 26 26 H 1.09001 * 109.47586 * 120.00658 * 2 1 3 27 27 H 1.09003 * 109.50957 * 296.71645 * 5 3 2 28 28 H 1.08998 * 109.50897 * 56.80643 * 5 3 2 29 29 H 1.09006 * 109.46968 * 184.48294 * 7 6 5 30 30 H 1.09000 * 109.47456 * 304.47802 * 7 6 5 31 31 H 0.96999 * 120.00641 * 179.97438 * 11 10 8 32 32 H 1.09002 * 109.50472 * 178.55213 * 16 6 5 33 33 H 1.09002 * 109.50684 * 298.68017 * 16 6 5 34 34 H 1.09000 * 109.46863 * 294.99958 * 19 17 16 35 35 H 1.09002 * 109.46565 * 54.99848 * 19 17 16 36 36 H 1.09000 * 109.47428 * 299.99855 * 20 19 17 37 37 H 1.09001 * 109.46806 * 59.99783 * 20 19 17 38 38 H 1.08995 * 109.46774 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6046 1.9831 0.8403 5 6 3.5658 1.4451 0.1257 6 7 4.0563 2.8289 0.0476 7 6 5.5140 2.8812 0.2211 8 6 6.1822 2.1640 -0.9234 9 1 5.5893 1.7826 -1.7415 10 6 7.5506 1.9946 -0.9261 11 7 8.1338 1.3690 -1.9252 12 14 8.5763 2.6548 0.4887 13 1 8.6987 1.6128 1.5396 14 1 9.9277 3.0188 -0.0074 15 1 7.9175 3.8576 1.0585 16 6 3.6539 3.4534 -1.2210 17 6 2.1273 3.4305 -1.3331 18 1 1.8269 3.8408 -2.2974 19 6 1.5197 4.2715 -0.2086 20 6 0.0030 4.3509 -0.3936 21 8 1.6664 2.0811 -1.2239 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8529 1.0107 1.0833 28 1 3.9988 0.8586 -0.6845 29 1 5.8407 3.9210 0.2386 30 1 5.7858 2.3992 1.1602 31 1 9.0965 1.2501 -1.9273 32 1 4.0053 4.4849 -1.2464 33 1 4.0884 2.8996 -2.0532 34 1 1.7448 3.8097 0.7527 35 1 1.9423 5.2759 -0.2371 36 1 -0.2222 4.8127 -1.3549 37 1 -0.4196 3.3465 -0.3652 38 1 -0.4299 4.9496 0.4078 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398474982.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:18 Heat of formation + Delta-G solvation = -58.441823 kcal Electronic energy + Delta-G solvation = -16985.108125 eV Core-core repulsion = 14441.004690 eV Total energy + Delta-G solvation = -2544.103434 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.54401 -35.43909 -34.34286 -32.35554 -32.14172 -28.96183 -28.47673 -25.49361 -23.57116 -22.76759 -21.70815 -20.34233 -18.82278 -16.93155 -16.23252 -15.74219 -14.56989 -14.43495 -14.37286 -13.95977 -13.58152 -13.25881 -12.99323 -12.76620 -12.32948 -12.13889 -11.83518 -11.61227 -11.43959 -11.11854 -10.96692 -10.80459 -10.73803 -10.64427 -10.42421 -10.15010 -10.07501 -9.72069 -9.50074 -8.87666 -8.62133 -7.24696 -6.12928 -4.13237 3.24994 3.32953 3.36635 4.17259 4.36861 4.79336 5.13255 5.17630 5.27295 5.33190 5.39512 5.43029 5.48006 5.71164 5.81050 5.83309 5.92403 6.00839 6.07306 6.10489 6.15585 6.20338 6.31186 6.34914 6.45180 6.56169 6.68979 6.70573 6.82176 6.87454 7.04033 7.51549 7.70804 7.97243 8.01438 8.41706 8.89795 9.49445 10.99929 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032716 B = 0.007802 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.643646 B = 3587.816511 C = 3986.355361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C 0.091 3.909 4 H 0.060 0.940 5 C 0.030 3.970 6 N -0.530 5.530 7 C 0.154 3.846 8 C -0.553 4.553 9 H 0.076 0.924 10 C 0.072 3.928 11 N -0.898 5.898 12 Si 0.879 3.121 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.264 1.264 16 C 0.030 3.970 17 C 0.093 3.907 18 H 0.094 0.906 19 C -0.145 4.145 20 C -0.147 4.147 21 O -0.376 6.376 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.029 0.971 30 H 0.025 0.975 31 H 0.264 0.736 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.641 2.256 4.444 14.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.078 0.922 5 C -0.099 4.099 6 N -0.254 5.254 7 C 0.027 3.973 8 C -0.591 4.591 9 H 0.094 0.906 10 C -0.131 4.131 11 N -0.536 5.536 12 Si 0.706 3.294 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.189 1.189 16 C -0.099 4.099 17 C 0.035 3.965 18 H 0.112 0.888 19 C -0.183 4.183 20 C -0.204 4.204 21 O -0.296 6.296 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.782 2.382 4.623 14.730 hybrid contribution 1.437 -0.041 0.153 1.446 sum -12.345 2.340 4.776 13.442 Atomic orbital electron populations 1.21687 0.95672 1.00924 1.01960 1.21512 0.96119 0.95109 1.02679 1.22204 0.94193 0.92901 0.87377 0.92219 1.22595 0.93635 0.91676 1.02001 1.62684 1.14904 1.15840 1.31931 1.20176 0.83453 0.97023 0.96610 1.21692 0.92993 1.37328 1.07110 0.90637 1.24979 0.97941 0.94359 0.95771 1.69930 1.10439 1.41936 1.31306 0.86791 0.79723 0.80071 0.82778 1.20211 1.21267 1.18891 1.22590 0.93775 1.00226 0.93319 1.22323 0.93403 0.82427 0.98306 0.88805 1.22004 0.95105 1.00459 1.00727 1.21727 0.96406 1.01596 1.00700 1.87941 1.76868 1.25933 1.38828 0.93231 0.93222 0.92108 0.91212 0.90875 0.91163 0.92815 0.95346 0.95695 0.92656 0.90929 0.92708 0.90479 0.91586 0.93284 0.92505 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.81 37.15 0.36 -1.36 16 2 C -0.12 -1.62 5.64 -26.74 -0.15 -1.77 16 3 C 0.09 1.48 2.41 -26.69 -0.06 1.42 16 4 H 0.06 0.94 6.38 -51.93 -0.33 0.61 16 5 C 0.03 0.58 4.65 -3.71 -0.02 0.56 16 6 N -0.53 -11.04 4.40 -235.75 -1.04 -12.07 16 7 C 0.15 3.71 4.21 -4.98 -0.02 3.68 16 8 C -0.55 -15.42 8.21 -34.44 -0.28 -15.71 16 9 H 0.08 2.31 6.05 -52.49 -0.32 1.99 16 10 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 11 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 12 Si 0.88 21.41 27.38 -169.99 -4.65 16.76 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.26 -6.20 6.68 56.52 0.38 -5.82 16 16 C 0.03 0.58 4.71 -3.71 -0.02 0.56 16 17 C 0.09 1.52 3.30 -26.68 -0.09 1.43 16 18 H 0.09 1.39 8.14 -51.92 -0.42 0.97 16 19 C -0.15 -2.06 5.04 -26.73 -0.13 -2.19 16 20 C -0.15 -1.77 9.81 37.16 0.36 -1.41 16 21 O -0.38 -6.49 9.38 -35.23 -0.33 -6.82 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.77 7.83 -51.93 -0.41 0.36 16 25 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.05 1.22 6.93 -51.93 -0.36 0.86 16 29 H 0.03 0.69 7.54 -51.93 -0.39 0.30 16 30 H 0.02 0.60 7.29 -51.93 -0.38 0.22 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.05 1.24 6.42 -51.93 -0.33 0.91 16 34 H 0.08 1.19 6.02 -51.93 -0.31 0.88 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.71 7.83 -51.93 -0.41 0.31 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 291.28 15.07 4.39 4.39 Total: -1.00 -29.67 291.28 -7.63 -37.29 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.62 Total: -0.10 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -0.14 Total: -12.80 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: -0.26 Total: -38.71 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.33 Total: -6.82 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.65 Total: 16.76 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.67 -7.63 -37.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398474982.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.151 kcal (2) G-P(sol) polarization free energy of solvation -29.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds