Wall clock time and date at job start Sun Mar 29 2020 21:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52993 * 109.47523 * 2 1 4 4 H 1.09003 * 109.54089 * 54.89048 * 3 2 1 5 5 C 1.53094 * 109.50890 * 175.00234 * 3 2 1 6 6 N 1.47020 * 109.25656 * 176.78310 * 5 3 2 7 7 C 1.46901 * 110.99736 * 177.60779 * 6 5 3 8 8 C 1.50693 * 109.47240 * 64.48163 * 7 6 5 9 9 H 1.07995 * 120.00140 * 4.85891 * 8 7 6 10 10 C 1.37881 * 119.99955 * 184.85789 * 8 7 6 11 11 N 1.31517 * 120.00047 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00180 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46535 * 90.00291 * 12 10 8 14 14 H 1.48495 * 109.47190 * 210.00012 * 12 10 8 15 15 H 1.48500 * 109.47118 * 330.00743 * 12 10 8 16 16 C 1.47013 * 110.75418 * 301.38343 * 6 5 3 17 17 C 1.53092 * 109.25557 * 58.61868 * 16 6 5 18 18 H 1.09008 * 109.50615 * 183.21432 * 17 16 6 19 19 C 1.53002 * 109.50992 * 63.12878 * 17 16 6 20 20 C 1.53001 * 109.47098 * 174.99757 * 19 17 16 21 21 O 1.43017 * 109.25954 * 303.14738 * 17 16 6 22 22 H 1.08999 * 109.47361 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47063 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.47568 * 59.99898 * 1 2 3 25 25 H 1.09010 * 109.46938 * 240.00077 * 2 1 3 26 26 H 1.09001 * 109.47586 * 120.00658 * 2 1 3 27 27 H 1.09003 * 109.50957 * 296.71645 * 5 3 2 28 28 H 1.08998 * 109.50897 * 56.80643 * 5 3 2 29 29 H 1.09006 * 109.46968 * 184.48294 * 7 6 5 30 30 H 1.09000 * 109.47456 * 304.47802 * 7 6 5 31 31 H 0.96999 * 120.00641 * 179.97438 * 11 10 8 32 32 H 1.09002 * 109.50472 * 178.55213 * 16 6 5 33 33 H 1.09002 * 109.50684 * 298.68017 * 16 6 5 34 34 H 1.09000 * 109.46863 * 294.99958 * 19 17 16 35 35 H 1.09002 * 109.46565 * 54.99848 * 19 17 16 36 36 H 1.09000 * 109.47428 * 299.99855 * 20 19 17 37 37 H 1.09001 * 109.46806 * 59.99783 * 20 19 17 38 38 H 1.08995 * 109.46774 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6046 1.9831 0.8403 5 6 3.5658 1.4451 0.1257 6 7 4.0563 2.8289 0.0476 7 6 5.5140 2.8812 0.2211 8 6 6.1822 2.1640 -0.9234 9 1 5.5893 1.7826 -1.7415 10 6 7.5506 1.9946 -0.9261 11 7 8.1338 1.3690 -1.9252 12 14 8.5763 2.6548 0.4887 13 1 8.6987 1.6128 1.5396 14 1 9.9277 3.0188 -0.0074 15 1 7.9175 3.8576 1.0585 16 6 3.6539 3.4534 -1.2210 17 6 2.1273 3.4305 -1.3331 18 1 1.8269 3.8408 -2.2974 19 6 1.5197 4.2715 -0.2086 20 6 0.0030 4.3509 -0.3936 21 8 1.6664 2.0811 -1.2239 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8529 1.0107 1.0833 28 1 3.9988 0.8586 -0.6845 29 1 5.8407 3.9210 0.2386 30 1 5.7858 2.3992 1.1602 31 1 9.0965 1.2501 -1.9273 32 1 4.0053 4.4849 -1.2464 33 1 4.0884 2.8996 -2.0532 34 1 1.7448 3.8097 0.7527 35 1 1.9423 5.2759 -0.2371 36 1 -0.2222 4.8127 -1.3549 37 1 -0.4196 3.3465 -0.3652 38 1 -0.4299 4.9496 0.4078 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398474982.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:18 Heat of formation + Delta-G solvation = -78.399538 kcal Electronic energy + Delta-G solvation = -16985.973556 eV Core-core repulsion = 14441.004690 eV Total energy + Delta-G solvation = -2544.968866 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.99686 -37.14147 -35.54499 -34.47883 -33.31089 -30.34552 -30.25960 -27.15943 -24.93415 -24.33584 -23.03013 -21.89347 -20.33062 -19.00312 -17.58886 -17.25089 -16.32595 -16.13001 -15.75485 -15.57630 -14.81712 -14.69673 -14.43608 -14.20144 -13.88410 -13.61658 -13.30587 -13.10910 -12.70343 -12.62639 -12.50018 -12.42451 -12.05996 -11.88225 -11.83343 -11.79240 -11.72076 -11.51975 -10.99489 -10.82900 -10.32543 -9.07910 -8.35360 -6.41700 1.33011 1.34558 1.46972 2.30538 2.85570 2.99415 3.18317 3.89608 3.91813 4.10347 4.19727 4.24202 4.32514 4.45868 4.47394 4.58188 4.69420 4.77119 4.82469 4.90381 4.93029 5.03680 5.05055 5.07027 5.13090 5.14033 5.20662 5.31325 5.40995 5.44554 5.47316 5.57483 6.01325 6.24763 6.27374 6.37711 6.64801 7.25220 8.81164 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032716 B = 0.007802 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.643646 B = 3587.816511 C = 3986.355361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C 0.099 3.901 4 H 0.077 0.923 5 C 0.030 3.970 6 N -0.520 5.520 7 C 0.160 3.840 8 C -0.553 4.553 9 H 0.029 0.971 10 C 0.010 3.990 11 N -0.948 5.948 12 Si 0.953 3.047 13 H -0.266 1.266 14 H -0.283 1.283 15 H -0.244 1.244 16 C 0.031 3.969 17 C 0.096 3.904 18 H 0.109 0.891 19 C -0.137 4.137 20 C -0.140 4.140 21 O -0.387 6.387 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.010 0.990 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.267 0.733 32 H 0.079 0.921 33 H 0.010 0.990 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.090 3.403 6.643 16.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C 0.041 3.959 4 H 0.095 0.905 5 C -0.099 4.099 6 N -0.243 5.243 7 C 0.032 3.968 8 C -0.592 4.592 9 H 0.048 0.952 10 C -0.188 4.188 11 N -0.588 5.588 12 Si 0.776 3.224 13 H -0.191 1.191 14 H -0.209 1.209 15 H -0.168 1.168 16 C -0.098 4.098 17 C 0.038 3.962 18 H 0.127 0.873 19 C -0.175 4.175 20 C -0.198 4.198 21 O -0.306 6.306 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.029 0.971 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.029 0.971 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.263 3.533 6.824 17.088 hybrid contribution 1.862 -0.439 -0.628 2.014 sum -13.401 3.094 6.196 15.085 Atomic orbital electron populations 1.21627 0.93552 1.02179 1.02134 1.21559 0.97917 0.93331 1.02621 1.22253 0.91439 0.94620 0.87602 0.90541 1.22676 0.96218 0.90289 1.00675 1.62719 1.12759 1.16523 1.32280 1.20064 0.85206 0.96446 0.95049 1.21887 0.93066 1.37156 1.07110 0.95238 1.25981 0.99376 0.94632 0.98848 1.70089 1.10974 1.43855 1.33890 0.85623 0.77651 0.80172 0.78961 1.19057 1.20919 1.16781 1.22639 0.96519 0.99563 0.91089 1.22405 0.90686 0.82730 1.00370 0.87299 1.21923 0.96700 1.00065 0.98798 1.21670 0.94380 1.01782 1.01939 1.87944 1.76562 1.26556 1.39546 0.91507 0.91842 0.93062 0.92984 0.89328 0.90339 0.97126 0.94943 0.94954 0.92444 0.90291 0.97145 0.91482 0.90734 0.92397 0.92999 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.81 71.98 0.71 -2.24 16 2 C -0.12 -3.12 5.64 30.59 0.17 -2.94 16 3 C 0.10 3.12 2.41 30.62 0.07 3.20 16 4 H 0.08 2.22 6.38 -2.39 -0.02 2.20 16 5 C 0.03 1.20 4.65 86.31 0.40 1.60 16 6 N -0.52 -21.68 4.40 -899.78 -3.96 -25.64 16 7 C 0.16 7.67 4.21 85.55 0.36 8.03 16 8 C -0.55 -32.04 8.21 25.60 0.21 -31.83 16 9 H 0.03 1.94 6.05 -2.91 -0.02 1.92 16 10 C 0.01 0.56 5.47 84.66 0.46 1.03 16 11 N -0.95 -59.88 13.96 21.45 0.30 -59.58 16 12 Si 0.95 44.01 27.38 68.60 1.88 45.89 16 13 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 14 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 15 H -0.24 -10.43 6.68 99.48 0.66 -9.77 16 16 C 0.03 1.23 4.71 86.31 0.41 1.64 16 17 C 0.10 3.04 3.30 30.63 0.10 3.14 16 18 H 0.11 3.11 8.14 -2.38 -0.02 3.09 16 19 C -0.14 -3.55 5.04 30.60 0.15 -3.40 16 20 C -0.14 -2.93 9.81 71.98 0.71 -2.22 16 21 O -0.39 -13.13 9.38 -148.98 -1.40 -14.53 16 22 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 24 H 0.05 1.20 7.83 -2.39 -0.02 1.18 16 25 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.08 2.93 8.14 -2.39 -0.02 2.92 16 28 H 0.01 0.50 6.93 -2.39 -0.02 0.49 16 29 H 0.03 1.54 7.54 -2.38 -0.02 1.52 16 30 H 0.03 1.51 7.29 -2.39 -0.02 1.49 16 31 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.01 0.50 6.42 -2.39 -0.02 0.48 16 34 H 0.07 1.88 6.02 -2.39 -0.01 1.87 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 1.14 7.83 -2.39 -0.02 1.12 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -66.24 291.28 1.54 -64.70 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.96 Total: 13.16 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 3.76 Total: -24.01 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -3.66 Total: -85.22 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -1.40 Total: -14.53 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Total: -66.24 1.54 -64.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398474982.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.701 kcal (2) G-P(sol) polarization free energy of solvation -66.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds