Wall clock time and date at job start Sun Mar 29 2020 22:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.50658 * 2 1 4 4 C 1.53121 * 109.53764 * 120.10313 * 2 1 3 5 5 C 1.53116 * 109.16134 * 62.29902 * 4 2 1 6 6 H 1.08999 * 109.50794 * 297.67689 * 5 4 2 7 7 C 1.52995 * 109.50368 * 177.59401 * 5 4 2 8 8 O 1.42903 * 109.47301 * 175.00090 * 7 5 4 9 9 C 1.53042 * 109.27611 * 57.66111 * 5 4 2 10 10 N 1.46856 * 109.52124 * 300.81491 * 9 5 4 11 11 C 1.46898 * 110.99790 * 185.83811 * 10 9 5 12 12 C 1.52992 * 109.47518 * 301.83902 * 11 10 9 13 13 C 1.50700 * 109.47257 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99988 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00047 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99792 * 359.72305 * 15 13 12 17 17 Si 1.86795 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47163 * 59.99902 * 17 15 13 19 19 H 1.48495 * 109.47159 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47290 * 299.99897 * 17 15 13 21 21 C 1.46847 * 111.19367 * 61.74799 * 10 9 5 22 22 H 1.08994 * 109.47228 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46991 * 300.08144 * 1 2 3 24 24 H 1.09001 * 109.47148 * 60.07847 * 1 2 3 25 25 H 1.08998 * 109.52483 * 182.21050 * 4 2 1 26 26 H 1.08998 * 109.52038 * 302.33674 * 4 2 1 27 27 H 1.08995 * 109.47863 * 295.00350 * 7 5 4 28 28 H 1.09006 * 109.46964 * 55.00956 * 7 5 4 29 29 H 0.96700 * 114.00199 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.46298 * 180.80796 * 9 5 4 31 31 H 1.08996 * 109.46726 * 60.83246 * 9 5 4 32 32 H 1.09004 * 109.46827 * 181.83585 * 11 10 9 33 33 H 1.09005 * 109.47082 * 61.84123 * 11 10 9 34 34 H 1.09004 * 109.47330 * 59.99991 * 12 11 10 35 35 H 1.08997 * 109.47279 * 300.00478 * 12 11 10 36 36 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.46541 * 58.26739 * 21 10 9 38 38 H 1.09002 * 109.46117 * 178.25508 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0420 -0.7238 1.2484 5 6 1.5765 -2.1819 1.2104 6 1 0.4872 -2.2169 1.2306 7 6 2.1341 -2.9280 2.4242 8 8 1.6059 -4.2555 2.4514 9 6 2.0861 -2.8417 -0.0730 10 7 1.5682 -2.1133 -1.2383 11 6 1.9229 -2.7990 -2.4880 12 6 3.4441 -2.9324 -2.5826 13 6 3.8079 -3.6365 -3.8644 14 1 3.0317 -3.9571 -4.5435 15 6 5.1317 -3.8722 -4.1697 16 7 6.0771 -3.4778 -3.3449 17 14 5.5827 -4.7443 -5.7589 18 1 5.0826 -3.9571 -6.9146 19 1 7.0591 -4.8738 -5.8506 20 1 4.9648 -6.0946 -5.7751 21 6 2.0409 -0.7230 -1.2484 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5151 0.8893 24 1 -0.3633 0.5126 -0.8907 25 1 3.1313 -0.6895 1.2683 26 1 1.6460 -0.2372 2.1397 27 1 3.2211 -2.9708 2.3567 28 1 1.8470 -2.4041 3.3360 29 1 1.9171 -4.7875 3.1965 30 1 1.7442 -3.8760 -0.1101 31 1 3.1757 -2.8188 -0.0853 32 1 1.5553 -2.2215 -3.3363 33 1 1.4698 -3.7904 -2.4998 34 1 3.8116 -3.5099 -1.7343 35 1 3.8972 -1.9412 -2.5708 36 1 7.0083 -3.6440 -3.5595 37 1 3.1308 -0.7100 -1.2551 38 1 1.6661 -0.2185 -2.1390 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398661334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:34 Heat of formation + Delta-G solvation = -71.486203 kcal Electronic energy + Delta-G solvation = -16643.039935 eV Core-core repulsion = 14098.370853 eV Total energy + Delta-G solvation = -2544.669081 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.32790 -36.61168 -34.62413 -32.55883 -31.88662 -28.97743 -26.50067 -25.50129 -25.08399 -22.79035 -21.12903 -20.23285 -18.26641 -17.11846 -16.38858 -15.36886 -15.18099 -14.52171 -14.24957 -13.93055 -13.76557 -13.40022 -12.87409 -12.78135 -12.33532 -12.17265 -11.80169 -11.21803 -11.12388 -11.08807 -10.85869 -10.79264 -10.70052 -10.39158 -10.01020 -9.94601 -9.79019 -9.70037 -9.63364 -9.10737 -8.32950 -7.37514 -5.99749 -4.02285 3.33663 3.37614 3.40551 4.29323 4.45123 4.62665 5.01237 5.09020 5.21576 5.27596 5.35506 5.42654 5.68478 5.74137 5.76378 5.91894 5.93105 6.01372 6.07724 6.21002 6.25652 6.32134 6.43416 6.51580 6.56803 6.62279 6.76321 6.78217 6.98388 7.60894 7.63103 7.71399 7.76427 7.94590 8.03088 8.45386 9.04777 9.61558 11.11335 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030411 B = 0.006729 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.501262 B = 4159.869069 C = 4633.548609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.067 0.933 4 C -0.108 4.108 5 C -0.085 4.085 6 H 0.083 0.917 7 C 0.081 3.919 8 O -0.570 6.570 9 C 0.065 3.935 10 N -0.539 5.539 11 C 0.058 3.942 12 C -0.008 4.008 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.057 3.943 22 H 0.070 0.930 23 H 0.040 0.960 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.041 0.959 29 H 0.374 0.626 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.018 0.982 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.040 0.960 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.007 4.818 11.227 14.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.146 4.146 5 C -0.104 4.104 6 H 0.102 0.898 7 C 0.003 3.997 8 O -0.374 6.374 9 C -0.063 4.063 10 N -0.262 5.262 11 C -0.069 4.069 12 C -0.046 4.046 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.072 4.072 22 H 0.089 0.911 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.220 0.780 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.636 5.051 10.725 14.667 hybrid contribution 1.711 -0.664 -0.432 1.885 sum -6.925 4.387 10.293 13.158 Atomic orbital electron populations 1.21744 0.94878 1.02740 1.00084 1.21146 0.96525 0.98220 0.94694 0.91444 1.21572 1.00588 0.94639 0.97786 1.21221 1.01650 0.93767 0.93751 0.89836 1.22239 0.97033 0.82945 0.97506 1.86530 1.73088 1.25236 1.52572 1.21981 0.97800 0.97698 0.88846 1.62277 1.58962 1.01670 1.03289 1.22296 0.98054 0.97459 0.89108 1.19653 0.90595 0.97098 0.97303 1.21155 0.91931 1.37498 1.05198 0.92666 1.25025 0.96643 0.95850 0.96882 1.69961 0.99971 1.47037 1.36591 0.86651 0.77161 0.80240 0.83915 1.20231 1.21329 1.20205 1.22063 0.98159 0.89948 0.97008 0.91098 0.94068 0.93279 0.92077 0.92272 0.93697 0.94060 0.77973 0.90688 0.94180 0.92179 0.92037 0.96374 0.96621 0.93022 0.94172 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.75 37.16 0.33 -1.44 16 2 C -0.09 -1.21 3.21 -90.53 -0.29 -1.50 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.11 -1.43 4.79 -26.61 -0.13 -1.56 16 5 C -0.09 -1.24 2.24 -90.54 -0.20 -1.45 16 6 H 0.08 1.26 6.59 -51.93 -0.34 0.92 16 7 C 0.08 1.03 6.43 37.15 0.24 1.27 16 8 O -0.57 -7.57 13.22 -35.23 -0.47 -8.03 16 9 C 0.06 1.19 4.01 -3.83 -0.02 1.17 16 10 N -0.54 -10.14 4.14 -234.66 -0.97 -11.12 16 11 C 0.06 1.26 5.30 -3.83 -0.02 1.24 16 12 C -0.01 -0.22 4.27 -27.89 -0.12 -0.34 16 13 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 17 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.06 0.98 4.49 -3.83 -0.02 0.97 16 22 H 0.07 1.01 6.01 -51.93 -0.31 0.70 16 23 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.37 3.11 9.12 45.56 0.42 3.53 16 30 H 0.07 1.47 7.83 -51.93 -0.41 1.07 16 31 H 0.04 0.83 6.61 -51.93 -0.34 0.48 16 32 H 0.06 1.29 8.06 -51.93 -0.42 0.87 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.02 0.51 6.51 -51.93 -0.34 0.17 16 35 H 0.02 0.44 6.68 -51.93 -0.35 0.09 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 37 H 0.04 0.79 6.75 -51.93 -0.35 0.44 16 38 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 LS Contribution 292.97 15.07 4.41 4.41 Total: -1.00 -31.39 292.97 -7.73 -39.12 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.78 Total: 0.53 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -0.64 Total: -15.33 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.24 Total: -37.67 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.47 Total: -8.03 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.39 -7.73 -39.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398661334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.364 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds