Wall clock time and date at job start Sun Mar 29 2020 22:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.50658 * 2 1 4 4 C 1.53121 * 109.53764 * 120.10313 * 2 1 3 5 5 C 1.53116 * 109.16134 * 62.29902 * 4 2 1 6 6 H 1.08999 * 109.50794 * 297.67689 * 5 4 2 7 7 C 1.52995 * 109.50368 * 177.59401 * 5 4 2 8 8 O 1.42903 * 109.47301 * 175.00090 * 7 5 4 9 9 C 1.53042 * 109.27611 * 57.66111 * 5 4 2 10 10 N 1.46856 * 109.52124 * 300.81491 * 9 5 4 11 11 C 1.46898 * 110.99790 * 185.83811 * 10 9 5 12 12 C 1.52992 * 109.47518 * 301.83902 * 11 10 9 13 13 C 1.50700 * 109.47257 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99988 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00047 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99792 * 359.72305 * 15 13 12 17 17 Si 1.86795 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47163 * 59.99902 * 17 15 13 19 19 H 1.48495 * 109.47159 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47290 * 299.99897 * 17 15 13 21 21 C 1.46847 * 111.19367 * 61.74799 * 10 9 5 22 22 H 1.08994 * 109.47228 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46991 * 300.08144 * 1 2 3 24 24 H 1.09001 * 109.47148 * 60.07847 * 1 2 3 25 25 H 1.08998 * 109.52483 * 182.21050 * 4 2 1 26 26 H 1.08998 * 109.52038 * 302.33674 * 4 2 1 27 27 H 1.08995 * 109.47863 * 295.00350 * 7 5 4 28 28 H 1.09006 * 109.46964 * 55.00956 * 7 5 4 29 29 H 0.96700 * 114.00199 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.46298 * 180.80796 * 9 5 4 31 31 H 1.08996 * 109.46726 * 60.83246 * 9 5 4 32 32 H 1.09004 * 109.46827 * 181.83585 * 11 10 9 33 33 H 1.09005 * 109.47082 * 61.84123 * 11 10 9 34 34 H 1.09004 * 109.47330 * 59.99991 * 12 11 10 35 35 H 1.08997 * 109.47279 * 300.00478 * 12 11 10 36 36 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.46541 * 58.26739 * 21 10 9 38 38 H 1.09002 * 109.46117 * 178.25508 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0420 -0.7238 1.2484 5 6 1.5765 -2.1819 1.2104 6 1 0.4872 -2.2169 1.2306 7 6 2.1341 -2.9280 2.4242 8 8 1.6059 -4.2555 2.4514 9 6 2.0861 -2.8417 -0.0730 10 7 1.5682 -2.1133 -1.2383 11 6 1.9229 -2.7990 -2.4880 12 6 3.4441 -2.9324 -2.5826 13 6 3.8079 -3.6365 -3.8644 14 1 3.0317 -3.9571 -4.5435 15 6 5.1317 -3.8722 -4.1697 16 7 6.0771 -3.4778 -3.3449 17 14 5.5827 -4.7443 -5.7589 18 1 5.0826 -3.9571 -6.9146 19 1 7.0591 -4.8738 -5.8506 20 1 4.9648 -6.0946 -5.7751 21 6 2.0409 -0.7230 -1.2484 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5151 0.8893 24 1 -0.3633 0.5126 -0.8907 25 1 3.1313 -0.6895 1.2683 26 1 1.6460 -0.2372 2.1397 27 1 3.2211 -2.9708 2.3567 28 1 1.8470 -2.4041 3.3360 29 1 1.9171 -4.7875 3.1965 30 1 1.7442 -3.8760 -0.1101 31 1 3.1757 -2.8188 -0.0853 32 1 1.5553 -2.2215 -3.3363 33 1 1.4698 -3.7904 -2.4998 34 1 3.8116 -3.5099 -1.7343 35 1 3.8972 -1.9412 -2.5708 36 1 7.0083 -3.6440 -3.5595 37 1 3.1308 -0.7100 -1.2551 38 1 1.6661 -0.2185 -2.1390 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398661334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:33 Heat of formation + Delta-G solvation = -94.291574 kcal Electronic energy + Delta-G solvation = -16644.028850 eV Core-core repulsion = 14098.370853 eV Total energy + Delta-G solvation = -2545.657996 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.68429 -37.73721 -36.22639 -34.59411 -33.08608 -30.94748 -27.67815 -26.99492 -26.59679 -24.66130 -22.37208 -21.90452 -19.59966 -18.59870 -18.09582 -16.76701 -16.61944 -16.38942 -15.59373 -15.42087 -15.01991 -14.88223 -14.32386 -14.19100 -13.98356 -13.81133 -13.26770 -12.96792 -12.82944 -12.59227 -12.40235 -12.21213 -12.04038 -11.92778 -11.57865 -11.50186 -11.36507 -11.19027 -11.00716 -10.80719 -10.57637 -9.07689 -8.23813 -6.36629 1.36545 1.40162 1.48086 2.37282 3.08109 3.09496 3.35897 3.85898 3.89688 4.05895 4.13482 4.33178 4.43400 4.48630 4.60733 4.66662 4.69953 4.73805 4.80005 4.82047 4.91200 4.98039 5.03872 5.05758 5.16408 5.28022 5.33408 5.39667 5.46628 5.55603 5.67695 5.72857 6.01905 6.29368 6.33672 6.80461 6.95694 7.32693 8.87016 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030411 B = 0.006729 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.501262 B = 4159.869069 C = 4633.548609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.083 4.083 3 H 0.087 0.913 4 C -0.105 4.105 5 C -0.079 4.079 6 H 0.086 0.914 7 C 0.082 3.918 8 O -0.592 6.592 9 C 0.070 3.930 10 N -0.528 5.528 11 C 0.070 3.930 12 C 0.006 3.994 13 C -0.546 4.546 14 H 0.061 0.939 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.968 3.032 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.055 3.945 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.037 0.963 28 H 0.076 0.924 29 H 0.395 0.605 30 H 0.056 0.944 31 H 0.006 0.994 32 H 0.065 0.935 33 H 0.059 0.941 34 H -0.012 1.012 35 H -0.011 1.011 36 H 0.264 0.736 37 H 0.008 0.992 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.131 5.379 11.735 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.102 4.102 3 H 0.106 0.894 4 C -0.143 4.143 5 C -0.098 4.098 6 H 0.104 0.896 7 C 0.004 3.996 8 O -0.401 6.401 9 C -0.059 4.059 10 N -0.251 5.251 11 C -0.058 4.058 12 C -0.033 4.033 13 C -0.584 4.584 14 H 0.080 0.920 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.791 3.209 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.074 4.074 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.113 0.887 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.244 0.756 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.007 0.993 35 H 0.008 0.992 36 H 0.072 0.928 37 H 0.026 0.974 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.774 5.611 11.255 15.927 hybrid contribution 2.078 -0.844 -0.561 2.312 sum -7.695 4.767 10.694 14.011 Atomic orbital electron populations 1.21682 0.93501 1.02106 1.01525 1.21173 0.97545 0.98672 0.92797 0.89434 1.21585 1.00140 0.93670 0.98876 1.21204 1.01640 0.94754 0.92223 0.89565 1.22233 0.96484 0.83034 0.97808 1.86474 1.73465 1.25877 1.54250 1.21942 0.95704 0.97375 0.90832 1.62344 1.58290 1.02308 1.02154 1.22072 0.94689 0.97942 0.91106 1.19469 0.93510 0.94756 0.95524 1.21613 0.92630 1.38029 1.06165 0.92050 1.26013 0.96481 0.96479 1.00783 1.70106 1.00429 1.48074 1.38727 0.85466 0.77034 0.79208 0.79147 1.19000 1.20709 1.19131 1.22166 0.96317 0.89333 0.99552 0.92712 0.91423 0.93088 0.93054 0.88724 0.94421 0.90618 0.75575 0.92578 0.97539 0.91655 0.92276 0.99338 0.99226 0.92781 0.97370 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.75 71.98 0.63 -2.37 16 2 C -0.08 -2.16 3.21 -10.74 -0.03 -2.19 16 3 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.11 -2.56 4.79 30.67 0.15 -2.41 16 5 C -0.08 -2.24 2.24 -10.74 -0.02 -2.26 16 6 H 0.09 2.43 6.59 -2.39 -0.02 2.42 16 7 C 0.08 1.97 6.43 71.98 0.46 2.43 16 8 O -0.59 -15.12 13.22 -148.98 -1.97 -17.09 16 9 C 0.07 2.65 4.01 86.33 0.35 3.00 16 10 N -0.53 -20.39 4.14 -896.32 -3.71 -24.10 16 11 C 0.07 3.15 5.30 86.30 0.46 3.61 16 12 C 0.01 0.32 4.27 29.85 0.13 0.44 16 13 C -0.55 -32.26 9.11 25.60 0.23 -32.02 16 14 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 15 C 0.00 0.02 5.46 84.66 0.46 0.48 16 16 N -0.93 -58.33 13.29 21.45 0.28 -58.05 16 17 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 C 0.05 1.92 4.49 86.33 0.39 2.31 16 22 H 0.05 1.44 6.01 -2.39 -0.01 1.43 16 23 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.39 6.03 9.12 -74.06 -0.68 5.35 16 30 H 0.06 2.30 7.83 -2.39 -0.02 2.28 16 31 H 0.01 0.28 6.61 -2.39 -0.02 0.27 16 32 H 0.06 2.86 8.06 -2.38 -0.02 2.84 16 33 H 0.06 2.67 8.14 -2.38 -0.02 2.65 16 34 H -0.01 -0.71 6.51 -2.38 -0.02 -0.72 16 35 H -0.01 -0.63 6.68 -2.39 -0.02 -0.65 16 36 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.01 0.33 6.75 -2.39 -0.02 0.32 16 38 H 0.07 2.39 8.06 -2.39 -0.02 2.37 16 Total: -1.00 -69.43 292.97 0.17 -69.26 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.35 Total: 11.64 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 3.19 Total: -28.99 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -3.43 Total: -82.15 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -1.97 Total: -17.09 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -69.43 0.17 -69.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398661334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.033 kcal (2) G-P(sol) polarization free energy of solvation -69.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds