Wall clock time and date at job start Sun Mar 29 2020 22:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.49802 * 2 1 4 4 C 1.53113 * 109.50707 * 120.11891 * 2 1 3 5 5 C 1.53121 * 109.16179 * 177.59736 * 4 2 1 6 6 H 1.09003 * 109.53456 * 62.30652 * 5 4 2 7 7 C 1.53000 * 109.50167 * 182.40282 * 5 4 2 8 8 O 1.42903 * 109.46726 * 184.80237 * 7 5 4 9 9 C 1.53032 * 109.27927 * 302.34611 * 5 4 2 10 10 N 1.46847 * 109.52333 * 59.17909 * 9 5 4 11 11 C 1.46903 * 111.00305 * 174.16259 * 10 9 5 12 12 C 1.52995 * 109.47488 * 169.99957 * 11 10 9 13 13 C 1.50696 * 109.47214 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99976 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99985 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99959 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99953 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47070 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47154 * 119.99855 * 17 15 13 20 20 H 1.48501 * 109.47066 * 239.99965 * 17 15 13 21 21 C 1.46847 * 111.19818 * 298.25717 * 10 9 5 22 22 H 1.09001 * 109.46738 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47234 * 300.07535 * 1 2 3 24 24 H 1.08999 * 109.47223 * 60.08007 * 1 2 3 25 25 H 1.09001 * 109.52408 * 57.68824 * 4 2 1 26 26 H 1.09001 * 109.52209 * 297.50263 * 4 2 1 27 27 H 1.09002 * 109.47398 * 304.80481 * 7 5 4 28 28 H 1.09001 * 109.47194 * 64.80661 * 7 5 4 29 29 H 0.96700 * 113.99509 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.46559 * 179.19496 * 9 5 4 31 31 H 1.09006 * 109.46294 * 299.16574 * 9 5 4 32 32 H 1.08998 * 109.47052 * 290.00035 * 11 10 9 33 33 H 1.09000 * 109.46568 * 49.99480 * 11 10 9 34 34 H 1.09004 * 109.46740 * 299.99788 * 12 11 10 35 35 H 1.08995 * 109.47353 * 59.99481 * 12 11 10 36 36 H 0.97000 * 119.99946 * 180.02562 * 16 15 13 37 37 H 1.08994 * 109.46791 * 181.75719 * 21 10 9 38 38 H 1.09005 * 109.46385 * 301.72860 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7242 1.2484 5 6 3.5713 -0.7722 1.2103 6 1 3.9684 0.2427 1.2301 7 6 4.0883 -1.5468 2.4243 8 8 5.5163 -1.4960 2.4488 9 6 4.0231 -1.4728 -0.0730 10 7 3.5093 -0.7415 -1.2382 11 6 4.0373 -1.3047 -2.4881 12 6 3.2969 -0.6898 -3.6774 13 6 3.8381 -1.2681 -4.9594 14 1 4.6311 -2.0006 -4.9290 15 6 3.3216 -0.8612 -6.1713 16 7 2.3563 0.0312 -6.2084 17 14 3.9930 -1.5775 -7.7606 18 1 5.0674 -2.5539 -7.4485 19 1 2.8994 -2.2623 -8.4957 20 1 4.5462 -0.4853 -8.6010 21 6 2.0410 -0.7229 -1.2484 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5150 0.8893 24 1 -0.3633 0.5126 -0.8907 25 1 1.6453 -1.7396 1.2683 26 1 1.7158 -0.1878 2.1397 27 1 3.6931 -1.0992 3.3362 28 1 3.7628 -2.5850 2.3585 29 1 5.9138 -1.9678 3.1934 30 1 5.1121 -1.4959 -0.1101 31 1 3.6376 -2.4923 -0.0853 32 1 5.1010 -1.0804 -2.5669 33 1 3.8927 -2.3851 -2.4892 34 1 2.2332 -0.9142 -3.5986 35 1 3.4414 0.3905 -3.6762 36 1 1.9927 0.3172 -7.0610 37 1 1.6905 -0.2014 -2.1390 38 1 1.6649 -1.7460 -1.2551 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398661336.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:35 Heat of formation + Delta-G solvation = -72.062856 kcal Electronic energy + Delta-G solvation = -16328.803434 eV Core-core repulsion = 13784.109347 eV Total energy + Delta-G solvation = -2544.694087 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.19738 -36.74643 -34.57792 -32.80397 -32.23358 -29.23192 -26.40232 -25.60817 -25.06729 -22.63058 -20.72112 -19.79768 -19.33397 -17.34997 -16.45913 -15.38532 -15.06539 -14.66572 -14.44213 -14.03362 -13.85327 -13.42004 -13.04047 -12.63134 -12.34311 -12.17109 -12.01083 -11.58010 -11.28365 -11.03074 -10.92624 -10.77943 -10.50479 -10.42304 -10.18301 -10.09017 -9.92089 -9.80325 -9.22049 -9.01539 -8.31595 -7.59025 -5.97868 -3.99698 3.32899 3.40196 3.44694 4.13785 4.41316 4.56418 4.94350 4.99522 5.11451 5.18518 5.29569 5.38334 5.54217 5.62644 5.70084 5.77831 5.87984 5.89025 6.00846 6.01483 6.11734 6.29567 6.34851 6.41618 6.42529 6.55176 6.67900 6.71946 6.99567 7.55885 7.59417 7.70035 7.87619 7.90729 8.09469 8.46933 9.07237 9.63881 11.13648 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033457 B = 0.005989 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.702546 B = 4674.303926 C = 5388.152502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.077 0.923 4 C -0.106 4.106 5 C -0.085 4.085 6 H 0.084 0.916 7 C 0.082 3.918 8 O -0.570 6.570 9 C 0.066 3.934 10 N -0.541 5.541 11 C 0.064 3.936 12 C 0.021 3.979 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.055 3.945 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.374 0.626 30 H 0.075 0.925 31 H 0.022 0.978 32 H 0.062 0.938 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.025 0.975 36 H 0.260 0.740 37 H 0.093 0.907 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.892 -2.527 17.100 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.096 0.904 4 C -0.144 4.144 5 C -0.104 4.104 6 H 0.103 0.897 7 C 0.004 3.996 8 O -0.374 6.374 9 C -0.062 4.062 10 N -0.265 5.265 11 C -0.063 4.063 12 C -0.017 4.017 13 C -0.559 4.559 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.073 4.073 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.220 0.780 30 H 0.094 0.906 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.933 -1.602 16.453 16.557 hybrid contribution 0.101 -1.596 -0.470 1.667 sum -0.832 -3.198 15.983 16.321 Atomic orbital electron populations 1.21775 0.95226 1.01570 1.01653 1.21166 0.94868 1.00417 0.94347 0.90429 1.21611 0.94105 1.00506 0.98167 1.21184 0.95166 1.00749 0.93311 0.89724 1.22233 0.80801 0.98846 0.97712 1.86548 1.19973 1.78419 1.52500 1.21993 1.00243 0.94026 0.89942 1.61996 1.07611 1.54107 1.02761 1.22292 0.99597 0.95783 0.88623 1.19249 0.95295 0.96800 0.90316 1.21238 1.19601 1.23882 0.91138 0.92717 1.24990 0.95078 0.95112 0.99143 1.69976 1.26538 1.31280 1.25572 0.86538 0.78876 0.79000 0.83607 1.19770 1.21064 1.20974 1.22256 0.88110 0.98500 0.98397 0.93007 0.92975 0.92173 0.92370 0.92169 0.93821 0.93963 0.77952 0.90648 0.96013 0.91969 0.96414 0.96167 0.95683 0.93078 0.88832 0.95774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.20 37.16 0.34 -1.46 16 2 C -0.09 -1.29 2.88 -90.54 -0.26 -1.55 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.11 -1.32 4.57 -26.61 -0.12 -1.44 16 5 C -0.09 -1.17 2.59 -90.54 -0.23 -1.40 16 6 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 7 C 0.08 0.90 6.43 37.16 0.24 1.14 16 8 O -0.57 -6.62 13.21 -35.23 -0.47 -7.08 16 9 C 0.07 1.10 4.59 -3.84 -0.02 1.08 16 10 N -0.54 -10.55 4.81 -234.67 -1.13 -11.67 16 11 C 0.06 1.43 5.21 -3.83 -0.02 1.41 16 12 C 0.02 0.55 4.22 -27.89 -0.12 0.43 16 13 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 14 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 17 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 C 0.06 1.01 4.13 -3.83 -0.02 0.99 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.37 2.44 9.12 45.56 0.42 2.86 16 30 H 0.08 1.31 7.83 -51.93 -0.41 0.91 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.02 0.56 6.21 -51.93 -0.32 0.23 16 35 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.09 1.94 5.81 -51.93 -0.30 1.64 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 299.51 15.07 4.51 4.51 Total: -1.00 -31.58 299.51 -8.06 -39.63 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -6.07 Total: -1.38 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -0.62 Total: -14.56 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.39 Total: -38.07 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.47 Total: -7.08 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.58 -8.06 -39.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398661336.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.428 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds