Wall clock time and date at job start Sun Mar 29 2020 22:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.49802 * 2 1 4 4 C 1.53113 * 109.50707 * 120.11891 * 2 1 3 5 5 C 1.53121 * 109.16179 * 177.59736 * 4 2 1 6 6 H 1.09003 * 109.53456 * 62.30652 * 5 4 2 7 7 C 1.53000 * 109.50167 * 182.40282 * 5 4 2 8 8 O 1.42903 * 109.46726 * 184.80237 * 7 5 4 9 9 C 1.53032 * 109.27927 * 302.34611 * 5 4 2 10 10 N 1.46847 * 109.52333 * 59.17909 * 9 5 4 11 11 C 1.46903 * 111.00305 * 174.16259 * 10 9 5 12 12 C 1.52995 * 109.47488 * 169.99957 * 11 10 9 13 13 C 1.50696 * 109.47214 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99976 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99985 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99959 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99953 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47070 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47154 * 119.99855 * 17 15 13 20 20 H 1.48501 * 109.47066 * 239.99965 * 17 15 13 21 21 C 1.46847 * 111.19818 * 298.25717 * 10 9 5 22 22 H 1.09001 * 109.46738 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47234 * 300.07535 * 1 2 3 24 24 H 1.08999 * 109.47223 * 60.08007 * 1 2 3 25 25 H 1.09001 * 109.52408 * 57.68824 * 4 2 1 26 26 H 1.09001 * 109.52209 * 297.50263 * 4 2 1 27 27 H 1.09002 * 109.47398 * 304.80481 * 7 5 4 28 28 H 1.09001 * 109.47194 * 64.80661 * 7 5 4 29 29 H 0.96700 * 113.99509 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.46559 * 179.19496 * 9 5 4 31 31 H 1.09006 * 109.46294 * 299.16574 * 9 5 4 32 32 H 1.08998 * 109.47052 * 290.00035 * 11 10 9 33 33 H 1.09000 * 109.46568 * 49.99480 * 11 10 9 34 34 H 1.09004 * 109.46740 * 299.99788 * 12 11 10 35 35 H 1.08995 * 109.47353 * 59.99481 * 12 11 10 36 36 H 0.97000 * 119.99946 * 180.02562 * 16 15 13 37 37 H 1.08994 * 109.46791 * 181.75719 * 21 10 9 38 38 H 1.09005 * 109.46385 * 301.72860 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7242 1.2484 5 6 3.5713 -0.7722 1.2103 6 1 3.9684 0.2427 1.2301 7 6 4.0883 -1.5468 2.4243 8 8 5.5163 -1.4960 2.4488 9 6 4.0231 -1.4728 -0.0730 10 7 3.5093 -0.7415 -1.2382 11 6 4.0373 -1.3047 -2.4881 12 6 3.2969 -0.6898 -3.6774 13 6 3.8381 -1.2681 -4.9594 14 1 4.6311 -2.0006 -4.9290 15 6 3.3216 -0.8612 -6.1713 16 7 2.3563 0.0312 -6.2084 17 14 3.9930 -1.5775 -7.7606 18 1 5.0674 -2.5539 -7.4485 19 1 2.8994 -2.2623 -8.4957 20 1 4.5462 -0.4853 -8.6010 21 6 2.0410 -0.7229 -1.2484 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5150 0.8893 24 1 -0.3633 0.5126 -0.8907 25 1 1.6453 -1.7396 1.2683 26 1 1.7158 -0.1878 2.1397 27 1 3.6931 -1.0992 3.3362 28 1 3.7628 -2.5850 2.3585 29 1 5.9138 -1.9678 3.1934 30 1 5.1121 -1.4959 -0.1101 31 1 3.6376 -2.4923 -0.0853 32 1 5.1010 -1.0804 -2.5669 33 1 3.8927 -2.3851 -2.4892 34 1 2.2332 -0.9142 -3.5986 35 1 3.4414 0.3905 -3.6762 36 1 1.9927 0.3172 -7.0610 37 1 1.6905 -0.2014 -2.1390 38 1 1.6649 -1.7460 -1.2551 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398661336.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:35 Heat of formation + Delta-G solvation = -95.295063 kcal Electronic energy + Delta-G solvation = -16329.810858 eV Core-core repulsion = 13784.109347 eV Total energy + Delta-G solvation = -2545.701511 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.50073 -37.74302 -36.16332 -34.70066 -33.49577 -31.16031 -27.62481 -26.97446 -26.61351 -24.36792 -22.05935 -21.27127 -20.67823 -18.64362 -18.17569 -16.67265 -16.59288 -16.30999 -16.10180 -15.25055 -15.05510 -14.75684 -14.42733 -14.25616 -13.97969 -13.43723 -13.35651 -13.03209 -12.83561 -12.80630 -12.52887 -12.24031 -11.98430 -11.84803 -11.64416 -11.49698 -11.33884 -11.17248 -10.95939 -10.76782 -10.55831 -9.19120 -8.22361 -6.33971 1.38617 1.39487 1.52933 2.38836 3.02235 3.10798 3.34813 3.86115 3.87544 4.04050 4.08170 4.32373 4.43678 4.46989 4.50610 4.58656 4.66853 4.70760 4.74462 4.77102 4.86447 4.94316 4.99030 5.02087 5.07882 5.24748 5.30810 5.39957 5.41948 5.52290 5.63611 5.76142 6.08096 6.30684 6.34718 6.81984 6.99288 7.35115 8.89973 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033457 B = 0.005989 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.702546 B = 4674.303926 C = 5388.152502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 H 0.067 0.933 4 C -0.098 4.098 5 C -0.083 4.083 6 H 0.069 0.931 7 C 0.087 3.913 8 O -0.595 6.595 9 C 0.068 3.932 10 N -0.551 5.551 11 C 0.078 3.922 12 C 0.033 3.967 13 C -0.547 4.547 14 H 0.058 0.942 15 C 0.003 3.997 16 N -0.930 5.930 17 Si 0.968 3.032 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.276 1.276 21 C 0.058 3.942 22 H 0.057 0.943 23 H 0.079 0.921 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.396 0.604 30 H 0.064 0.936 31 H 0.025 0.975 32 H 0.058 0.942 33 H 0.017 0.983 34 H 0.002 0.998 35 H -0.008 1.008 36 H 0.265 0.735 37 H 0.056 0.944 38 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.860 -3.485 18.581 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 H 0.086 0.914 4 C -0.136 4.136 5 C -0.102 4.102 6 H 0.087 0.913 7 C 0.009 3.991 8 O -0.403 6.403 9 C -0.060 4.060 10 N -0.275 5.275 11 C -0.050 4.050 12 C -0.005 4.005 13 C -0.585 4.585 14 H 0.076 0.924 15 C -0.195 4.195 16 N -0.570 5.570 17 Si 0.792 3.208 18 H -0.187 1.187 19 H -0.201 1.201 20 H -0.202 1.202 21 C -0.070 4.070 22 H 0.076 0.924 23 H 0.098 0.902 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.110 0.890 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.246 0.754 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.020 0.980 35 H 0.010 0.990 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -0.893 -2.570 17.969 18.174 hybrid contribution 0.097 -1.269 -0.915 1.567 sum -0.796 -3.839 17.054 17.499 Atomic orbital electron populations 1.21746 0.93461 1.02200 1.02338 1.21144 0.96301 0.99508 0.93482 0.91444 1.21574 0.92966 1.01155 0.97889 1.21181 0.96218 0.99954 0.92880 0.91278 1.22180 0.80662 0.99168 0.97073 1.86490 1.20483 1.79148 1.54189 1.22054 0.99530 0.94304 0.90135 1.61977 1.08495 1.54585 1.02487 1.21966 0.98782 0.95303 0.88901 1.19042 0.94715 0.94790 0.91925 1.21637 1.20065 1.24398 0.92420 0.92413 1.25960 0.95157 0.95288 1.03110 1.70107 1.27673 1.32395 1.26869 0.85357 0.78484 0.78419 0.78520 1.18728 1.20105 1.20197 1.22217 0.87302 0.98307 0.99182 0.92397 0.90198 0.93599 0.91373 0.89046 0.91091 0.92830 0.75428 0.91750 0.95709 0.92359 0.96500 0.97972 0.99001 0.92659 0.92564 0.96115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.20 71.98 0.66 -2.61 16 2 C -0.09 -2.40 2.88 -10.74 -0.03 -2.44 16 3 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.10 -2.17 4.57 30.67 0.14 -2.03 16 5 C -0.08 -2.12 2.59 -10.74 -0.03 -2.15 16 6 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 7 C 0.09 1.63 6.43 71.98 0.46 2.09 16 8 O -0.59 -12.43 13.21 -148.98 -1.97 -14.39 16 9 C 0.07 2.22 4.59 86.32 0.40 2.61 16 10 N -0.55 -22.10 4.81 -896.37 -4.31 -26.41 16 11 C 0.08 3.63 5.21 86.30 0.45 4.08 16 12 C 0.03 1.82 4.22 29.84 0.13 1.95 16 13 C -0.55 -32.48 9.11 25.60 0.23 -32.25 16 14 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 15 C 0.00 0.17 5.46 84.66 0.46 0.63 16 16 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 17 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 18 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 C 0.06 2.18 4.13 86.33 0.36 2.53 16 22 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.40 4.12 9.12 -74.06 -0.68 3.44 16 30 H 0.06 2.24 7.83 -2.39 -0.02 2.22 16 31 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.02 0.78 8.08 -2.39 -0.02 0.76 16 34 H 0.00 0.12 6.21 -2.38 -0.01 0.11 16 35 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 36 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.06 2.51 5.81 -2.39 -0.01 2.49 16 38 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -69.75 299.51 -0.40 -70.15 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.33 Total: 8.44 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 3.23 Total: -27.58 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -4.02 Total: -83.95 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -1.97 Total: -14.39 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -69.75 -0.40 -70.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398661336.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.146 kcal (2) G-P(sol) polarization free energy of solvation -69.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds