Wall clock time and date at job start Sun Mar 29 2020 21:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47123 * 2 1 4 4 H 1.09002 * 109.46991 * 302.92663 * 3 2 1 5 5 C 1.50695 * 109.47002 * 182.92462 * 3 2 1 6 6 H 1.08002 * 119.99691 * 245.26420 * 5 3 2 7 7 C 1.37877 * 120.00371 * 65.26702 * 5 3 2 8 8 N 1.31510 * 120.00192 * 193.76679 * 7 5 3 9 9 Si 1.86801 * 119.99713 * 13.77135 * 7 5 3 10 10 H 1.48498 * 109.47309 * 84.90730 * 9 7 5 11 11 H 1.48497 * 109.47053 * 204.90719 * 9 7 5 12 12 H 1.48497 * 109.47153 * 324.90720 * 9 7 5 13 13 N 1.46903 * 109.47052 * 62.91855 * 3 2 1 14 14 C 1.46899 * 110.99692 * 64.02072 * 13 3 2 15 15 C 1.46900 * 110.99865 * 187.96605 * 13 3 2 16 16 H 1.09001 * 109.52427 * 304.66939 * 15 13 3 17 17 C 1.53177 * 109.52349 * 184.53769 * 15 13 3 18 18 C 1.53182 * 109.03472 * 183.11609 * 17 15 13 19 19 C 1.53093 * 109.16416 * 56.98545 * 18 17 15 20 20 O 1.42905 * 109.41220 * 302.38754 * 19 18 17 21 21 C 1.42916 * 114.15316 * 61.12425 * 20 19 18 22 22 H 1.09003 * 109.46864 * 54.95502 * 1 2 3 23 23 H 1.09003 * 109.46893 * 174.95023 * 1 2 3 24 24 H 1.09000 * 109.47531 * 294.94970 * 1 2 3 25 25 H 1.08996 * 109.46589 * 119.99739 * 2 1 3 26 26 H 1.08996 * 109.47002 * 239.99441 * 2 1 3 27 27 H 0.96995 * 120.00100 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.47573 * 59.99765 * 14 13 3 29 29 H 1.08996 * 109.47188 * 179.97438 * 14 13 3 30 30 H 1.09002 * 109.46788 * 299.99558 * 14 13 3 31 31 H 1.09002 * 109.54422 * 302.98420 * 17 15 13 32 32 H 1.08994 * 109.54087 * 63.25128 * 17 15 13 33 33 H 1.09002 * 109.51948 * 176.88753 * 18 17 15 34 34 H 1.09001 * 109.52337 * 297.00958 * 18 17 15 35 35 H 1.09000 * 109.48090 * 62.36846 * 19 18 17 36 36 H 1.08993 * 109.47915 * 182.39760 * 19 18 17 37 37 H 1.08998 * 109.53714 * 178.91986 * 21 20 19 38 38 H 1.09000 * 109.42537 * 58.89369 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6345 1.9712 -0.8626 5 6 3.5452 1.4431 -0.0725 6 1 4.1256 1.8202 0.7566 7 6 4.1815 0.9623 -1.1972 8 7 5.4714 0.7082 -1.1650 9 14 3.2113 0.6720 -2.7669 10 1 3.1184 1.9406 -3.5332 11 1 3.8984 -0.3547 -3.5908 12 1 1.8458 0.1994 -2.4245 13 7 1.6088 2.1143 1.2332 14 6 2.2144 1.4855 2.4146 15 6 1.9158 3.5501 1.1854 16 1 2.9786 3.6889 0.9871 17 6 1.5570 4.1952 2.5276 18 6 1.8081 5.7037 2.4398 19 6 0.9925 6.2824 1.2806 20 8 1.3528 5.6177 0.0680 21 6 1.0973 4.2116 0.0737 22 1 -0.3633 0.5901 -0.8414 23 1 -0.3633 -1.0237 -0.0905 24 1 -0.3634 0.4335 0.9317 25 1 1.8932 -0.5138 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 5.9191 0.3703 -1.9563 28 1 3.3002 1.5488 2.3435 29 1 1.8788 2.0025 3.3135 30 1 1.9138 0.4389 2.4633 31 1 0.5057 4.0129 2.7503 32 1 2.1774 3.7675 3.3151 33 1 1.5032 6.1786 3.3724 34 1 2.8687 5.8871 2.2675 35 1 -0.0700 6.1345 1.4743 36 1 1.2000 7.3482 1.1866 37 1 1.3805 3.7857 -0.8889 38 1 0.0360 4.0367 0.2504 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401478938.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:16 Heat of formation + Delta-G solvation = -44.064242 kcal Electronic energy + Delta-G solvation = -17294.148120 eV Core-core repulsion = 14750.668144 eV Total energy + Delta-G solvation = -2543.479976 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.27802 -36.97752 -33.57178 -32.15162 -31.60662 -29.29816 -27.49785 -25.39258 -23.69343 -23.01358 -21.87629 -19.69318 -18.92976 -16.89357 -16.22812 -15.59439 -15.11103 -14.41417 -14.25823 -14.13395 -13.52689 -12.94618 -12.83532 -12.51948 -12.32718 -12.27257 -11.84012 -11.48053 -11.14565 -11.03158 -10.88774 -10.78692 -10.54598 -10.34689 -10.12478 -9.85604 -9.61852 -9.54031 -9.15078 -9.00887 -8.48329 -7.15571 -6.13163 -4.09822 3.28093 3.36597 3.39525 4.18999 4.40144 4.88444 5.12207 5.16718 5.20251 5.28240 5.50256 5.60051 5.81420 5.90618 6.00001 6.02935 6.06057 6.11363 6.22150 6.28729 6.30813 6.37091 6.46925 6.56669 6.70412 6.76473 6.83985 6.86379 6.99994 7.19605 7.27352 7.53425 7.60735 8.10040 8.14581 8.45196 8.91950 9.53116 10.99709 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026138 B = 0.010016 C = 0.009253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.964452 B = 2794.935042 C = 3025.177418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C 0.181 3.819 4 H 0.034 0.966 5 C -0.548 4.548 6 H 0.075 0.925 7 C 0.080 3.920 8 N -0.892 5.892 9 Si 0.857 3.143 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.246 1.246 13 N -0.524 5.524 14 C 0.028 3.972 15 C 0.056 3.944 16 H 0.062 0.938 17 C -0.117 4.117 18 C -0.154 4.154 19 C 0.061 3.939 20 O -0.385 6.385 21 C 0.072 3.928 22 H 0.040 0.960 23 H 0.031 0.969 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.263 0.737 28 H 0.039 0.961 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.536 5.747 5.415 12.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C 0.074 3.926 4 H 0.051 0.949 5 C -0.587 4.587 6 H 0.093 0.907 7 C -0.124 4.124 8 N -0.529 5.529 9 Si 0.684 3.316 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.171 1.171 13 N -0.249 5.249 14 C -0.121 4.121 15 C -0.053 4.053 16 H 0.080 0.920 17 C -0.155 4.155 18 C -0.192 4.192 19 C -0.016 4.016 20 O -0.303 6.303 21 C -0.005 4.005 22 H 0.059 0.941 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.812 5.725 5.183 12.487 hybrid contribution 0.592 -0.323 -0.746 1.005 sum -9.221 5.402 4.437 11.571 Atomic orbital electron populations 1.21718 0.97826 0.98986 1.01313 1.21998 0.93510 0.99026 1.01241 1.19659 0.94235 0.90643 0.88112 0.94878 1.21536 0.90416 1.42955 1.03744 0.90703 1.24922 0.94626 0.94053 0.98754 1.69973 1.09840 1.43732 1.29384 0.87344 0.81912 0.78349 0.83953 1.20368 1.21562 1.17051 1.62431 1.57723 1.00725 1.04001 1.22288 0.98708 0.98919 0.92159 1.22026 0.99651 0.89527 0.94096 0.91966 1.21747 1.01697 0.94053 0.98016 1.22200 1.01575 0.96747 0.98709 1.22504 0.97385 0.96550 0.85159 1.87936 1.85898 1.21001 1.35450 1.22614 0.98140 0.79605 1.00095 0.94101 0.95026 0.92483 0.92705 0.92433 0.92717 0.94262 0.93487 0.92171 0.91725 0.91574 0.91447 0.91178 0.93652 0.89604 0.88568 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.72 37.16 0.36 -2.18 16 2 C -0.12 -2.55 4.61 -26.73 -0.12 -2.68 16 3 C 0.18 4.11 1.16 -68.87 -0.08 4.03 16 4 H 0.03 0.78 4.90 -51.93 -0.25 0.53 16 5 C -0.55 -14.75 7.46 -34.44 -0.26 -15.01 16 6 H 0.08 2.22 6.09 -52.49 -0.32 1.90 16 7 C 0.08 2.24 5.36 -17.82 -0.10 2.15 16 8 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 9 Si 0.86 20.87 25.88 -169.99 -4.40 16.47 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 12 H -0.25 -5.59 5.31 56.52 0.30 -5.28 16 13 N -0.52 -10.40 4.05 -228.13 -0.92 -11.33 16 14 C 0.03 0.52 8.46 60.06 0.51 1.03 16 15 C 0.06 1.06 2.01 -67.57 -0.14 0.93 16 16 H 0.06 1.40 7.00 -51.93 -0.36 1.04 16 17 C -0.12 -1.79 4.67 -26.55 -0.12 -1.92 16 18 C -0.15 -2.06 6.14 -26.59 -0.16 -2.22 16 19 C 0.06 0.83 6.85 37.21 0.25 1.08 16 20 O -0.38 -6.80 10.76 -35.23 -0.38 -7.18 16 21 C 0.07 1.32 5.98 37.20 0.22 1.54 16 22 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.99 7.84 -51.93 -0.41 0.58 16 25 H 0.05 1.17 6.36 -51.93 -0.33 0.84 16 26 H 0.06 1.30 4.67 -51.93 -0.24 1.06 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.04 0.84 6.15 -51.93 -0.32 0.53 16 29 H 0.05 0.76 6.03 -51.93 -0.31 0.45 16 30 H 0.06 1.12 6.35 -51.93 -0.33 0.79 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.00 6.45 -51.93 -0.33 0.66 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.10 1.92 6.48 -51.93 -0.34 1.59 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 278.32 15.07 4.19 4.19 Total: -1.00 -29.01 278.32 -6.54 -35.55 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.17 Total: 1.65 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 0.37 Total: -13.25 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.15 Total: -37.43 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.38 Total: -7.18 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.40 Total: 16.47 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.01 -6.54 -35.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401478938.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.514 kcal (2) G-P(sol) polarization free energy of solvation -29.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds