Wall clock time and date at job start Sun Mar 29 2020 21:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47123 * 2 1 4 4 H 1.09002 * 109.46991 * 302.92663 * 3 2 1 5 5 C 1.50695 * 109.47002 * 182.92462 * 3 2 1 6 6 H 1.08002 * 119.99691 * 245.26420 * 5 3 2 7 7 C 1.37877 * 120.00371 * 65.26702 * 5 3 2 8 8 N 1.31510 * 120.00192 * 193.76679 * 7 5 3 9 9 Si 1.86801 * 119.99713 * 13.77135 * 7 5 3 10 10 H 1.48498 * 109.47309 * 84.90730 * 9 7 5 11 11 H 1.48497 * 109.47053 * 204.90719 * 9 7 5 12 12 H 1.48497 * 109.47153 * 324.90720 * 9 7 5 13 13 N 1.46903 * 109.47052 * 62.91855 * 3 2 1 14 14 C 1.46899 * 110.99692 * 64.02072 * 13 3 2 15 15 C 1.46900 * 110.99865 * 187.96605 * 13 3 2 16 16 H 1.09001 * 109.52427 * 304.66939 * 15 13 3 17 17 C 1.53177 * 109.52349 * 184.53769 * 15 13 3 18 18 C 1.53182 * 109.03472 * 183.11609 * 17 15 13 19 19 C 1.53093 * 109.16416 * 56.98545 * 18 17 15 20 20 O 1.42905 * 109.41220 * 302.38754 * 19 18 17 21 21 C 1.42916 * 114.15316 * 61.12425 * 20 19 18 22 22 H 1.09003 * 109.46864 * 54.95502 * 1 2 3 23 23 H 1.09003 * 109.46893 * 174.95023 * 1 2 3 24 24 H 1.09000 * 109.47531 * 294.94970 * 1 2 3 25 25 H 1.08996 * 109.46589 * 119.99739 * 2 1 3 26 26 H 1.08996 * 109.47002 * 239.99441 * 2 1 3 27 27 H 0.96995 * 120.00100 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.47573 * 59.99765 * 14 13 3 29 29 H 1.08996 * 109.47188 * 179.97438 * 14 13 3 30 30 H 1.09002 * 109.46788 * 299.99558 * 14 13 3 31 31 H 1.09002 * 109.54422 * 302.98420 * 17 15 13 32 32 H 1.08994 * 109.54087 * 63.25128 * 17 15 13 33 33 H 1.09002 * 109.51948 * 176.88753 * 18 17 15 34 34 H 1.09001 * 109.52337 * 297.00958 * 18 17 15 35 35 H 1.09000 * 109.48090 * 62.36846 * 19 18 17 36 36 H 1.08993 * 109.47915 * 182.39760 * 19 18 17 37 37 H 1.08998 * 109.53714 * 178.91986 * 21 20 19 38 38 H 1.09000 * 109.42537 * 58.89369 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6345 1.9712 -0.8626 5 6 3.5452 1.4431 -0.0725 6 1 4.1256 1.8202 0.7566 7 6 4.1815 0.9623 -1.1972 8 7 5.4714 0.7082 -1.1650 9 14 3.2113 0.6720 -2.7669 10 1 3.1184 1.9406 -3.5332 11 1 3.8984 -0.3547 -3.5908 12 1 1.8458 0.1994 -2.4245 13 7 1.6088 2.1143 1.2332 14 6 2.2144 1.4855 2.4146 15 6 1.9158 3.5501 1.1854 16 1 2.9786 3.6889 0.9871 17 6 1.5570 4.1952 2.5276 18 6 1.8081 5.7037 2.4398 19 6 0.9925 6.2824 1.2806 20 8 1.3528 5.6177 0.0680 21 6 1.0973 4.2116 0.0737 22 1 -0.3633 0.5901 -0.8414 23 1 -0.3633 -1.0237 -0.0905 24 1 -0.3634 0.4335 0.9317 25 1 1.8932 -0.5138 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 5.9191 0.3703 -1.9563 28 1 3.3002 1.5488 2.3435 29 1 1.8788 2.0025 3.3135 30 1 1.9138 0.4389 2.4633 31 1 0.5057 4.0129 2.7503 32 1 2.1774 3.7675 3.3151 33 1 1.5032 6.1786 3.3724 34 1 2.8687 5.8871 2.2675 35 1 -0.0700 6.1345 1.4743 36 1 1.2000 7.3482 1.1866 37 1 1.3805 3.7857 -0.8889 38 1 0.0360 4.0367 0.2504 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401478938.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:16 Heat of formation + Delta-G solvation = -64.512995 kcal Electronic energy + Delta-G solvation = -17295.034844 eV Core-core repulsion = 14750.668144 eV Total energy + Delta-G solvation = -2544.366700 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.69328 -38.54732 -35.16744 -34.05520 -33.04151 -30.73758 -29.31266 -26.92506 -25.13627 -24.69125 -23.27887 -21.12618 -20.69386 -18.84002 -17.69385 -17.00041 -16.76289 -16.03690 -15.71075 -15.62640 -15.12005 -14.58313 -14.35054 -14.19187 -13.81274 -13.64020 -13.60934 -13.06753 -12.72894 -12.61098 -12.47470 -12.20171 -12.06072 -11.89456 -11.71537 -11.47129 -11.31555 -11.18425 -10.91668 -10.60393 -10.33861 -8.92732 -8.32262 -6.31685 1.32537 1.36436 1.44344 2.33512 2.89153 3.03813 3.40127 3.88339 3.99006 4.05390 4.21315 4.37185 4.39264 4.51371 4.56320 4.66901 4.73354 4.76114 4.82766 4.86428 4.96104 5.00148 5.06824 5.11519 5.13809 5.24809 5.28997 5.34056 5.41803 5.52639 5.57934 5.68417 6.12121 6.29311 6.39181 6.52894 6.75262 7.34629 8.84352 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026138 B = 0.010016 C = 0.009253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.964452 B = 2794.935042 C = 3025.177418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.120 4.120 3 C 0.184 3.816 4 H 0.032 0.968 5 C -0.540 4.540 6 H 0.032 0.968 7 C 0.020 3.980 8 N -0.945 5.945 9 Si 0.917 3.083 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.215 1.215 13 N -0.511 5.511 14 C 0.033 3.967 15 C 0.055 3.945 16 H 0.012 0.988 17 C -0.111 4.111 18 C -0.150 4.150 19 C 0.053 3.947 20 O -0.408 6.408 21 C 0.079 3.921 22 H 0.044 0.956 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.263 0.737 28 H 0.001 0.999 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.794 6.305 6.020 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.158 4.158 3 C 0.076 3.924 4 H 0.050 0.950 5 C -0.579 4.579 6 H 0.050 0.950 7 C -0.178 4.178 8 N -0.584 5.584 9 Si 0.741 3.259 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.137 1.137 13 N -0.235 5.235 14 C -0.116 4.116 15 C -0.054 4.054 16 H 0.030 0.970 17 C -0.149 4.149 18 C -0.188 4.188 19 C -0.023 4.023 20 O -0.327 6.327 21 C 0.002 3.998 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.020 0.980 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.122 0.878 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.127 0.873 37 H 0.088 0.912 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.099 6.293 5.810 15.651 hybrid contribution 1.669 -0.406 -0.810 1.900 sum -11.430 5.887 5.000 13.795 Atomic orbital electron populations 1.21620 0.94534 1.00694 1.02024 1.21913 0.96363 0.97165 1.00378 1.19579 0.91045 0.92217 0.89586 0.95010 1.21815 0.92872 1.41095 1.02087 0.95024 1.25771 0.95490 0.94302 1.02255 1.70121 1.11913 1.46086 1.30321 0.86385 0.81996 0.78089 0.79437 1.20459 1.21691 1.13733 1.62478 1.56718 1.01219 1.03074 1.22296 0.96311 0.99785 0.93184 1.22071 0.96992 0.89305 0.97072 0.96987 1.21716 1.02687 0.95164 0.95316 1.22196 1.00655 0.95456 1.00496 1.22829 0.98617 0.97334 0.83517 1.87903 1.86411 1.20452 1.37884 1.22435 0.98865 0.80178 0.98328 0.93667 0.92787 0.91557 0.93247 0.93775 0.92835 0.98028 0.90157 0.91652 0.89730 0.91653 0.87838 0.93013 0.91444 0.87336 0.91194 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 9.72 71.98 0.70 -3.57 16 2 C -0.12 -4.93 4.61 30.59 0.14 -4.79 16 3 C 0.18 8.32 1.16 44.17 0.05 8.37 16 4 H 0.03 1.48 4.90 -2.39 -0.01 1.47 16 5 C -0.54 -30.29 7.46 25.60 0.19 -30.10 16 6 H 0.03 2.01 6.09 -2.91 -0.02 1.99 16 7 C 0.02 1.16 5.36 84.66 0.45 1.62 16 8 N -0.94 -59.55 13.96 21.45 0.30 -59.25 16 9 Si 0.92 43.60 25.88 68.60 1.78 45.37 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 12 H -0.21 -9.06 5.31 99.48 0.53 -8.53 16 13 N -0.51 -19.90 4.05 -875.67 -3.55 -23.45 16 14 C 0.03 1.22 8.46 127.69 1.08 2.30 16 15 C 0.06 2.07 2.01 45.01 0.09 2.16 16 16 H 0.01 0.57 7.00 -2.39 -0.02 0.55 16 17 C -0.11 -3.15 4.67 30.71 0.14 -3.01 16 18 C -0.15 -3.61 6.14 30.69 0.19 -3.43 16 19 C 0.05 1.28 6.85 72.01 0.49 1.77 16 20 O -0.41 -13.89 10.76 -148.98 -1.60 -15.50 16 21 C 0.08 2.80 5.98 72.01 0.43 3.23 16 22 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.07 2.03 7.84 -2.39 -0.02 2.01 16 25 H 0.05 2.06 6.36 -2.39 -0.02 2.04 16 26 H 0.04 1.91 4.67 -2.39 -0.01 1.90 16 27 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 28 H 0.00 0.05 6.15 -2.39 -0.01 0.03 16 29 H 0.08 2.46 6.03 -2.39 -0.01 2.45 16 30 H 0.06 2.37 6.35 -2.39 -0.02 2.35 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 1.85 6.45 -2.39 -0.02 1.83 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.07 2.81 6.48 -2.39 -0.02 2.79 16 38 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -66.01 278.32 1.73 -64.27 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.85 Total: 13.99 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 3.96 Total: -25.44 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -3.25 Total: -82.70 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -1.60 Total: -15.50 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.78 Total: 45.37 kcal Total: -66.01 1.73 -64.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401478938.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.239 kcal (2) G-P(sol) polarization free energy of solvation -66.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds