Wall clock time and date at job start Sun Mar 29 2020 21:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47500 * 2 1 4 4 H 1.09001 * 109.46984 * 314.64386 * 3 2 1 5 5 C 1.50696 * 109.47258 * 194.63978 * 3 2 1 6 6 H 1.08002 * 120.00211 * 244.63799 * 5 3 2 7 7 C 1.37872 * 120.00041 * 64.64156 * 5 3 2 8 8 N 1.31517 * 119.99980 * 198.88209 * 7 5 3 9 9 Si 1.86807 * 120.00117 * 18.87807 * 7 5 3 10 10 H 1.48498 * 109.47037 * 84.64099 * 9 7 5 11 11 H 1.48497 * 109.47040 * 204.64045 * 9 7 5 12 12 H 1.48504 * 109.46864 * 324.63896 * 9 7 5 13 13 N 1.46898 * 109.47083 * 74.63583 * 3 2 1 14 14 C 1.46907 * 110.99690 * 47.74372 * 13 3 2 15 15 C 1.46901 * 111.00489 * 283.79183 * 13 3 2 16 16 H 1.09004 * 109.52197 * 80.83020 * 15 13 3 17 17 C 1.53175 * 109.52390 * 201.01781 * 15 13 3 18 18 C 1.53179 * 109.03495 * 176.88128 * 17 15 13 19 19 C 1.53087 * 109.16656 * 303.02269 * 18 17 15 20 20 O 1.42903 * 109.41558 * 57.60797 * 19 18 17 21 21 C 1.42908 * 114.09825 * 298.84266 * 20 19 18 22 22 H 1.09001 * 109.47619 * 172.64973 * 1 2 3 23 23 H 1.08994 * 109.47319 * 292.65820 * 1 2 3 24 24 H 1.09005 * 109.47115 * 52.65875 * 1 2 3 25 25 H 1.09002 * 109.47302 * 239.99514 * 2 1 3 26 26 H 1.08997 * 109.46976 * 120.00053 * 2 1 3 27 27 H 0.97003 * 119.99987 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47137 * 59.99823 * 14 13 3 29 29 H 1.08995 * 109.47131 * 179.97438 * 14 13 3 30 30 H 1.09000 * 109.47273 * 300.00075 * 14 13 3 31 31 H 1.08996 * 109.54436 * 296.75806 * 17 15 13 32 32 H 1.09004 * 109.54175 * 57.02104 * 17 15 13 33 33 H 1.09005 * 109.51841 * 183.11718 * 18 17 15 34 34 H 1.08996 * 109.51889 * 62.93341 * 18 17 15 35 35 H 1.08998 * 109.47988 * 297.62867 * 19 18 17 36 36 H 1.08997 * 109.48374 * 177.59039 * 19 18 17 37 37 H 1.08996 * 109.47673 * 301.17546 * 21 20 19 38 38 H 1.08994 * 109.47927 * 181.13755 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4803 2.0258 -0.7312 5 6 3.5035 1.4578 -0.3591 6 1 4.2335 1.7912 0.3637 7 6 3.9107 1.0462 -1.6104 8 7 5.1638 0.7031 -1.8143 9 14 2.6823 0.9757 -3.0161 10 1 2.5691 2.3175 -3.6422 11 1 3.1456 -0.0059 -4.0294 12 1 1.3559 0.5595 -2.4939 13 7 1.8573 2.0265 1.3355 14 6 2.3480 1.1167 2.3794 15 6 0.4511 2.3830 1.5664 16 1 -0.1078 1.4926 1.8547 17 6 0.3645 3.4273 2.6835 18 6 -1.0975 3.8483 2.8617 19 6 -1.6342 4.3772 1.5291 20 8 -1.4958 3.3677 0.5271 21 6 -0.1454 2.9684 0.2837 22 1 -0.3634 -1.0192 -0.1315 23 1 -0.3633 0.3959 0.9483 24 1 -0.3634 0.6234 -0.8171 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 5.4503 0.4139 -2.6948 28 1 3.4097 0.9245 2.2242 29 1 2.2011 1.5737 3.3580 30 1 1.7978 0.1771 2.3306 31 1 0.7364 2.9979 3.6138 32 1 0.9645 4.2974 2.4166 33 1 -1.1614 4.6318 3.6169 34 1 -1.6883 2.9883 3.1769 35 1 -1.0689 5.2614 1.2347 36 1 -2.6867 4.6383 1.6390 37 1 0.4392 3.8342 -0.0269 38 1 -0.1256 2.2147 -0.5034 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401478939.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:18 Heat of formation + Delta-G solvation = -25.393910 kcal Electronic energy + Delta-G solvation = -17468.278052 eV Core-core repulsion = 14925.607683 eV Total energy + Delta-G solvation = -2542.670369 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.71187 -37.21386 -33.51388 -32.31143 -31.16271 -29.97858 -27.62926 -25.45683 -23.91542 -22.96315 -22.00587 -20.05352 -18.85867 -17.14293 -16.00066 -15.75850 -15.38396 -14.61572 -14.49687 -14.08012 -13.52298 -13.20622 -12.77636 -12.58480 -12.47694 -12.22711 -11.90577 -11.53905 -11.21543 -11.08952 -11.01095 -10.74473 -10.65808 -10.59313 -10.26620 -10.04965 -9.60214 -9.38435 -9.25631 -9.10239 -8.30683 -7.25839 -6.10093 -4.00190 3.29100 3.37428 3.40663 4.06209 4.43028 4.75978 5.02118 5.07695 5.15717 5.19300 5.30788 5.47962 5.57401 5.71779 5.86028 5.91650 5.95394 6.03537 6.03847 6.10603 6.16654 6.17289 6.30309 6.35668 6.51302 6.55178 6.72097 6.76538 6.83156 6.97687 7.25231 7.43538 7.64922 7.96922 8.10418 8.67075 9.04531 9.57436 11.02854 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032769 B = 0.009657 C = 0.008813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.250291 B = 2898.861557 C = 3176.401567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.161 4.161 3 C 0.181 3.819 4 H 0.040 0.960 5 C -0.506 4.506 6 H 0.079 0.921 7 C 0.077 3.923 8 N -0.890 5.890 9 Si 0.855 3.145 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.256 1.256 13 N -0.516 5.516 14 C 0.031 3.969 15 C 0.043 3.957 16 H 0.054 0.946 17 C -0.113 4.113 18 C -0.154 4.154 19 C 0.058 3.942 20 O -0.387 6.387 21 C 0.049 3.951 22 H 0.039 0.961 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.263 0.737 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.023 0.977 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.855 3.614 7.091 14.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.200 4.200 3 C 0.074 3.926 4 H 0.057 0.943 5 C -0.544 4.544 6 H 0.097 0.903 7 C -0.126 4.126 8 N -0.527 5.527 9 Si 0.681 3.319 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.180 1.180 13 N -0.240 5.240 14 C -0.118 4.118 15 C -0.066 4.066 16 H 0.071 0.929 17 C -0.151 4.151 18 C -0.192 4.192 19 C -0.019 4.019 20 O -0.305 6.305 21 C -0.027 4.027 22 H 0.058 0.942 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.593 3.908 6.870 14.031 hybrid contribution -0.708 -0.746 -0.759 1.278 sum -12.301 3.162 6.111 14.094 Atomic orbital electron populations 1.22403 0.98462 1.00314 1.01454 1.22671 0.92999 1.02114 1.02213 1.19869 0.97782 0.88745 0.86194 0.94266 1.20838 0.90178 1.43686 0.99713 0.90304 1.24843 0.94871 0.94284 0.98571 1.69997 1.16836 1.43055 1.22805 0.87324 0.83312 0.78213 0.83042 1.20308 1.21513 1.18024 1.62263 1.14310 1.43521 1.03894 1.22357 1.01806 0.93986 0.93609 1.22447 0.91301 0.97273 0.95568 0.92859 1.21637 0.95074 0.99578 0.98768 1.22198 0.97447 1.01468 0.98073 1.22535 1.00843 0.90658 0.87815 1.87933 1.27339 1.57604 1.57586 1.23272 0.81912 1.00161 0.97377 0.94221 0.92283 0.93016 0.92067 0.91898 0.92715 0.90412 0.93552 0.95854 0.91887 0.91139 0.91226 0.91548 0.93334 0.89551 0.92343 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 8.46 37.15 0.31 -2.79 16 2 C -0.16 -3.43 4.27 -26.73 -0.11 -3.54 16 3 C 0.18 4.14 1.29 -68.87 -0.09 4.05 16 4 H 0.04 0.92 3.85 -51.93 -0.20 0.72 16 5 C -0.51 -13.87 8.53 -34.44 -0.29 -14.16 16 6 H 0.08 2.38 7.61 -52.49 -0.40 1.98 16 7 C 0.08 2.16 5.19 -17.82 -0.09 2.07 16 8 N -0.89 -26.71 13.96 55.43 0.77 -25.93 16 9 Si 0.85 20.88 25.86 -169.99 -4.40 16.48 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -5.87 5.87 56.52 0.33 -5.54 16 13 N -0.52 -10.42 4.51 -228.12 -1.03 -11.45 16 14 C 0.03 0.57 8.54 60.07 0.51 1.08 16 15 C 0.04 0.74 1.45 -67.57 -0.10 0.64 16 16 H 0.05 0.93 5.15 -51.93 -0.27 0.66 16 17 C -0.11 -1.64 5.39 -26.55 -0.14 -1.78 16 18 C -0.15 -1.86 6.14 -26.59 -0.16 -2.02 16 19 C 0.06 0.75 6.84 37.20 0.25 1.00 16 20 O -0.39 -6.32 10.77 -35.23 -0.38 -6.70 16 21 C 0.05 0.86 4.63 37.21 0.17 1.04 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.06 1.02 4.61 -51.93 -0.24 0.78 16 24 H 0.05 0.96 6.14 -51.93 -0.32 0.64 16 25 H 0.06 1.41 5.46 -51.93 -0.28 1.13 16 26 H 0.06 1.32 5.44 -51.93 -0.28 1.03 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.08 1.60 7.21 -51.93 -0.37 1.23 16 29 H 0.05 0.75 6.91 -51.93 -0.36 0.39 16 30 H 0.02 0.42 5.88 -51.93 -0.31 0.11 16 31 H 0.06 0.88 7.05 -51.93 -0.37 0.51 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.11 2.07 3.42 -51.93 -0.18 1.90 16 LS Contribution 269.92 15.07 4.07 4.07 Total: -1.00 -29.06 269.92 -6.44 -35.50 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.74 Total: 2.43 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 0.26 Total: -14.40 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: -0.26 Total: -37.38 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.38 Total: -6.70 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.40 Total: 16.48 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.06 -6.44 -35.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401478939.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.110 kcal (2) G-P(sol) polarization free energy of solvation -29.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds