Wall clock time and date at job start Sun Mar 29 2020 21:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47500 * 2 1 4 4 H 1.09001 * 109.46984 * 314.64386 * 3 2 1 5 5 C 1.50696 * 109.47258 * 194.63978 * 3 2 1 6 6 H 1.08002 * 120.00211 * 244.63799 * 5 3 2 7 7 C 1.37872 * 120.00041 * 64.64156 * 5 3 2 8 8 N 1.31517 * 119.99980 * 198.88209 * 7 5 3 9 9 Si 1.86807 * 120.00117 * 18.87807 * 7 5 3 10 10 H 1.48498 * 109.47037 * 84.64099 * 9 7 5 11 11 H 1.48497 * 109.47040 * 204.64045 * 9 7 5 12 12 H 1.48504 * 109.46864 * 324.63896 * 9 7 5 13 13 N 1.46898 * 109.47083 * 74.63583 * 3 2 1 14 14 C 1.46907 * 110.99690 * 47.74372 * 13 3 2 15 15 C 1.46901 * 111.00489 * 283.79183 * 13 3 2 16 16 H 1.09004 * 109.52197 * 80.83020 * 15 13 3 17 17 C 1.53175 * 109.52390 * 201.01781 * 15 13 3 18 18 C 1.53179 * 109.03495 * 176.88128 * 17 15 13 19 19 C 1.53087 * 109.16656 * 303.02269 * 18 17 15 20 20 O 1.42903 * 109.41558 * 57.60797 * 19 18 17 21 21 C 1.42908 * 114.09825 * 298.84266 * 20 19 18 22 22 H 1.09001 * 109.47619 * 172.64973 * 1 2 3 23 23 H 1.08994 * 109.47319 * 292.65820 * 1 2 3 24 24 H 1.09005 * 109.47115 * 52.65875 * 1 2 3 25 25 H 1.09002 * 109.47302 * 239.99514 * 2 1 3 26 26 H 1.08997 * 109.46976 * 120.00053 * 2 1 3 27 27 H 0.97003 * 119.99987 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47137 * 59.99823 * 14 13 3 29 29 H 1.08995 * 109.47131 * 179.97438 * 14 13 3 30 30 H 1.09000 * 109.47273 * 300.00075 * 14 13 3 31 31 H 1.08996 * 109.54436 * 296.75806 * 17 15 13 32 32 H 1.09004 * 109.54175 * 57.02104 * 17 15 13 33 33 H 1.09005 * 109.51841 * 183.11718 * 18 17 15 34 34 H 1.08996 * 109.51889 * 62.93341 * 18 17 15 35 35 H 1.08998 * 109.47988 * 297.62867 * 19 18 17 36 36 H 1.08997 * 109.48374 * 177.59039 * 19 18 17 37 37 H 1.08996 * 109.47673 * 301.17546 * 21 20 19 38 38 H 1.08994 * 109.47927 * 181.13755 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4803 2.0258 -0.7312 5 6 3.5035 1.4578 -0.3591 6 1 4.2335 1.7912 0.3637 7 6 3.9107 1.0462 -1.6104 8 7 5.1638 0.7031 -1.8143 9 14 2.6823 0.9757 -3.0161 10 1 2.5691 2.3175 -3.6422 11 1 3.1456 -0.0059 -4.0294 12 1 1.3559 0.5595 -2.4939 13 7 1.8573 2.0265 1.3355 14 6 2.3480 1.1167 2.3794 15 6 0.4511 2.3830 1.5664 16 1 -0.1078 1.4926 1.8547 17 6 0.3645 3.4273 2.6835 18 6 -1.0975 3.8483 2.8617 19 6 -1.6342 4.3772 1.5291 20 8 -1.4958 3.3677 0.5271 21 6 -0.1454 2.9684 0.2837 22 1 -0.3634 -1.0192 -0.1315 23 1 -0.3633 0.3959 0.9483 24 1 -0.3634 0.6234 -0.8171 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 5.4503 0.4139 -2.6948 28 1 3.4097 0.9245 2.2242 29 1 2.2011 1.5737 3.3580 30 1 1.7978 0.1771 2.3306 31 1 0.7364 2.9979 3.6138 32 1 0.9645 4.2974 2.4166 33 1 -1.1614 4.6318 3.6169 34 1 -1.6883 2.9883 3.1769 35 1 -1.0689 5.2614 1.2347 36 1 -2.6867 4.6383 1.6390 37 1 0.4392 3.8342 -0.0269 38 1 -0.1256 2.2147 -0.5034 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401478939.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:18 Heat of formation + Delta-G solvation = -46.190858 kcal Electronic energy + Delta-G solvation = -17469.179875 eV Core-core repulsion = 14925.607683 eV Total energy + Delta-G solvation = -2543.572193 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.08411 -38.64925 -35.06381 -34.08202 -32.65682 -31.35284 -29.43958 -26.84975 -25.29816 -24.66147 -23.36722 -21.39353 -20.46356 -19.00325 -17.40233 -17.20767 -17.01697 -15.94318 -15.85066 -15.73648 -14.91424 -14.81014 -14.37980 -14.05208 -13.86270 -13.68870 -13.51389 -13.09288 -12.78419 -12.69948 -12.56679 -12.24751 -12.15879 -11.98213 -11.65045 -11.58751 -11.35699 -11.19108 -10.89028 -10.47181 -10.31979 -8.83861 -8.28834 -6.22364 1.33752 1.37906 1.45046 2.36157 2.84006 3.04182 3.36866 3.81491 3.89896 4.04896 4.14587 4.19447 4.31473 4.38849 4.45579 4.52019 4.61990 4.65854 4.76886 4.78314 4.86039 4.94049 5.02485 5.06311 5.08471 5.13512 5.22004 5.25687 5.34077 5.46350 5.59192 5.66855 6.06179 6.24486 6.45913 6.75658 6.81684 7.38921 8.87902 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032769 B = 0.009657 C = 0.008813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.250291 B = 2898.861557 C = 3176.401567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.158 4.158 3 C 0.187 3.813 4 H 0.040 0.960 5 C -0.507 4.507 6 H 0.034 0.966 7 C 0.022 3.978 8 N -0.939 5.939 9 Si 0.916 3.084 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.231 1.231 13 N -0.532 5.532 14 C 0.036 3.964 15 C 0.046 3.954 16 H 0.059 0.941 17 C -0.111 4.111 18 C -0.145 4.145 19 C 0.048 3.952 20 O -0.397 6.397 21 C 0.054 3.946 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.041 0.959 26 H 0.062 0.938 27 H 0.264 0.736 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.114 0.886 37 H 0.045 0.955 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.943 3.976 7.913 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.198 4.198 3 C 0.079 3.921 4 H 0.058 0.942 5 C -0.546 4.546 6 H 0.053 0.947 7 C -0.176 4.176 8 N -0.579 5.579 9 Si 0.740 3.260 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.154 1.154 13 N -0.257 5.257 14 C -0.112 4.112 15 C -0.063 4.063 16 H 0.077 0.923 17 C -0.149 4.149 18 C -0.183 4.183 19 C -0.028 4.028 20 O -0.315 6.315 21 C -0.023 4.023 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.132 0.868 37 H 0.063 0.937 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.710 4.281 7.717 17.154 hybrid contribution 0.296 -0.791 -0.897 1.232 sum -14.414 3.490 6.820 16.323 Atomic orbital electron populations 1.22297 0.95520 1.01717 1.02155 1.22531 0.95531 1.00410 1.01290 1.19655 0.94501 0.90050 0.87910 0.94247 1.21102 0.92165 1.42477 0.98816 0.94722 1.25630 0.96603 0.94149 1.01214 1.70134 1.19194 1.45143 1.23442 0.86323 0.82005 0.78209 0.79491 1.19985 1.21574 1.15351 1.62153 1.16911 1.43702 1.02925 1.22294 0.99891 0.94549 0.94510 1.22503 0.89071 0.98217 0.96491 0.92308 1.21639 0.97082 0.98309 0.97877 1.22163 0.95212 1.02559 0.98367 1.22853 1.02776 0.89866 0.87292 1.87914 1.25997 1.58660 1.58934 1.23049 0.82723 0.99300 0.97179 0.92236 0.91096 0.93075 0.94023 0.91943 0.92715 0.93561 0.90705 0.94997 0.91013 0.92184 0.88449 0.90932 0.93122 0.86756 0.93714 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.40 8.46 71.98 0.61 -4.79 16 2 C -0.16 -6.57 4.27 30.59 0.13 -6.44 16 3 C 0.19 8.50 1.29 44.17 0.06 8.56 16 4 H 0.04 1.82 3.85 -2.39 -0.01 1.81 16 5 C -0.51 -28.73 8.53 25.60 0.22 -28.51 16 6 H 0.03 2.21 7.61 -2.91 -0.02 2.19 16 7 C 0.02 1.28 5.19 84.65 0.44 1.72 16 8 N -0.94 -58.51 13.96 21.45 0.30 -58.21 16 9 Si 0.92 43.47 25.86 68.60 1.77 45.24 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 12 H -0.23 -9.91 5.87 99.48 0.58 -9.32 16 13 N -0.53 -21.19 4.51 -875.65 -3.95 -25.14 16 14 C 0.04 1.30 8.54 127.69 1.09 2.39 16 15 C 0.05 1.47 1.45 45.00 0.07 1.54 16 16 H 0.06 1.86 5.15 -2.39 -0.01 1.85 16 17 C -0.11 -2.92 5.39 30.71 0.17 -2.76 16 18 C -0.14 -2.91 6.14 30.68 0.19 -2.73 16 19 C 0.05 1.06 6.84 72.01 0.49 1.55 16 20 O -0.40 -11.84 10.77 -148.98 -1.60 -13.44 16 21 C 0.05 1.81 4.63 72.01 0.33 2.15 16 22 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.07 2.22 4.61 -2.39 -0.01 2.21 16 24 H 0.05 1.74 6.14 -2.38 -0.01 1.73 16 25 H 0.04 1.87 5.46 -2.39 -0.01 1.86 16 26 H 0.06 2.56 5.44 -2.39 -0.01 2.55 16 27 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.05 1.96 7.21 -2.39 -0.02 1.94 16 29 H 0.07 2.28 6.91 -2.39 -0.02 2.26 16 30 H 0.03 1.11 5.88 -2.39 -0.01 1.09 16 31 H 0.07 1.76 7.05 -2.39 -0.02 1.74 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.10 3.44 3.42 -2.39 -0.01 3.43 16 Total: -1.00 -64.33 269.92 1.23 -63.11 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.92 Total: 15.77 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: 3.79 Total: -27.32 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -3.65 Total: -83.35 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -1.60 Total: -13.44 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.77 Total: 45.24 kcal Total: -64.33 1.23 -63.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401478939.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.915 kcal (2) G-P(sol) polarization free energy of solvation -64.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds