Wall clock time and date at job start Sun Mar 29 2020 21:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46858 * 2 1 4 4 H 1.08991 * 109.47378 * 55.85601 * 3 2 1 5 5 C 1.50711 * 109.46869 * 175.85099 * 3 2 1 6 6 H 1.07998 * 119.99951 * 119.99857 * 5 3 2 7 7 C 1.37876 * 119.99951 * 300.00219 * 5 3 2 8 8 N 1.31517 * 119.99908 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00029 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47202 * 89.99908 * 9 7 5 11 11 H 1.48494 * 109.46986 * 209.99934 * 9 7 5 12 12 H 1.48504 * 109.47006 * 329.99457 * 9 7 5 13 13 N 1.46897 * 109.47562 * 295.84838 * 3 2 1 14 14 C 1.46902 * 111.00111 * 295.29219 * 13 3 2 15 15 C 1.46898 * 111.00080 * 171.33745 * 13 3 2 16 16 H 1.09000 * 109.52360 * 57.30105 * 15 13 3 17 17 C 1.53185 * 109.52280 * 177.48244 * 15 13 3 18 18 C 1.53171 * 109.03925 * 176.88783 * 17 15 13 19 19 C 1.53092 * 109.16130 * 303.02025 * 18 17 15 20 20 O 1.42902 * 109.41669 * 57.60978 * 19 18 17 21 21 C 1.42908 * 114.09773 * 298.84067 * 20 19 18 22 22 H 1.08998 * 109.47277 * 175.25624 * 1 2 3 23 23 H 1.09002 * 109.46871 * 295.25520 * 1 2 3 24 24 H 1.09002 * 109.47089 * 55.25646 * 1 2 3 25 25 H 1.09005 * 109.46936 * 240.00617 * 2 1 3 26 26 H 1.08996 * 109.47269 * 120.00568 * 2 1 3 27 27 H 0.97002 * 119.99565 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.47323 * 296.04354 * 14 13 3 29 29 H 1.08998 * 109.46858 * 56.04452 * 14 13 3 30 30 H 1.08999 * 109.47091 * 176.04010 * 14 13 3 31 31 H 1.08999 * 109.54024 * 57.01797 * 17 15 13 32 32 H 1.09001 * 109.54308 * 296.75863 * 17 15 13 33 33 H 1.09000 * 109.52860 * 183.11655 * 18 17 15 34 34 H 1.09005 * 109.52420 * 62.92299 * 18 17 15 35 35 H 1.09001 * 109.48082 * 177.58802 * 19 18 17 36 36 H 1.08992 * 109.48325 * 297.62521 * 19 18 17 37 37 H 1.08994 * 109.48070 * 181.14098 * 21 20 19 38 38 H 1.08997 * 109.47841 * 301.17929 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6173 1.9773 0.8504 5 6 3.5435 1.4437 0.1028 6 1 4.1379 1.8921 -0.6795 7 6 4.1603 0.8723 1.1956 8 7 3.4364 0.3267 2.1484 9 14 6.0239 0.8745 1.3234 10 1 6.4704 2.1039 2.0264 11 1 6.4692 -0.3203 2.0844 12 1 6.6135 0.8416 -0.0392 13 7 1.6339 2.1055 -1.2464 14 6 2.2760 1.4788 -2.4095 15 6 1.9249 3.5445 -1.1962 16 1 2.9875 3.6948 -1.0056 17 6 1.5471 4.1901 -2.5330 18 6 1.7817 5.7010 -2.4421 19 6 0.9697 6.2663 -1.2738 20 8 1.3482 5.6017 -0.0667 21 6 1.1074 4.1930 -0.0760 22 1 -0.3634 -1.0241 -0.0850 23 1 -0.3633 0.4385 0.9295 24 1 -0.3633 0.5857 -0.8445 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.8704 -0.0756 2.9170 28 1 3.3556 1.6150 -2.3458 29 1 2.0443 0.4138 -2.4224 30 1 1.9046 1.9425 -3.3233 31 1 0.4960 3.9965 -2.7471 32 1 2.1654 3.7721 -3.3274 33 1 1.4632 6.1756 -3.3703 34 1 2.8414 5.8959 -2.2772 35 1 1.1661 7.3341 -1.1777 36 1 -0.0926 6.1070 -1.4587 37 1 1.4029 3.7674 0.8829 38 1 0.0469 4.0067 -0.2454 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401478940.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:20 Heat of formation + Delta-G solvation = -67.865779 kcal Electronic energy + Delta-G solvation = -17234.497210 eV Core-core repulsion = 14689.985122 eV Total energy + Delta-G solvation = -2544.512088 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.63644 -38.43110 -35.19483 -33.81354 -32.81803 -30.70338 -28.85488 -26.86047 -25.13800 -24.91565 -23.17256 -21.03594 -20.67548 -18.35860 -17.58932 -16.91548 -16.84979 -15.95995 -15.71330 -15.49952 -14.88304 -14.70140 -14.23238 -14.04815 -13.66070 -13.56153 -13.24666 -13.02473 -12.65949 -12.57900 -12.49335 -12.27061 -12.06219 -11.84097 -11.70978 -11.54942 -11.23171 -11.17785 -10.86653 -10.43060 -10.28655 -8.94018 -8.03334 -6.24523 1.34345 1.36640 1.44452 2.38966 2.92417 3.15638 3.49704 3.92041 4.00675 4.07917 4.24888 4.37580 4.51124 4.58548 4.68178 4.77370 4.79885 4.85837 4.90152 4.93364 4.99293 5.06586 5.11673 5.15154 5.21671 5.35221 5.42808 5.45231 5.52132 5.64546 5.80860 6.06295 6.20230 6.26982 6.43725 6.67801 6.95915 7.45371 8.91528 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023962 B = 0.009867 C = 0.008504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.255980 B = 2837.121097 C = 3291.681653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 C 0.215 3.785 4 H 0.013 0.987 5 C -0.549 4.549 6 H 0.045 0.955 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.941 3.059 10 H -0.281 1.281 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.526 5.526 14 C 0.037 3.963 15 C 0.060 3.940 16 H 0.016 0.984 17 C -0.111 4.111 18 C -0.148 4.148 19 C 0.051 3.949 20 O -0.408 6.408 21 C 0.081 3.919 22 H 0.045 0.955 23 H 0.032 0.968 24 H 0.060 0.940 25 H 0.032 0.968 26 H 0.061 0.939 27 H 0.261 0.739 28 H 0.007 0.993 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.110 0.890 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 7.205 -9.032 12.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.146 4.146 3 C 0.108 3.892 4 H 0.031 0.969 5 C -0.588 4.588 6 H 0.063 0.937 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.768 3.232 10 H -0.207 1.207 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.250 5.250 14 C -0.112 4.112 15 C -0.050 4.050 16 H 0.034 0.966 17 C -0.149 4.149 18 C -0.186 4.186 19 C -0.025 4.025 20 O -0.326 6.326 21 C 0.004 3.996 22 H 0.065 0.935 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.026 0.974 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.075 0.925 35 H 0.128 0.872 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.707 7.159 -8.749 12.663 hybrid contribution 2.153 -0.387 0.495 2.242 sum -3.555 6.771 -8.254 11.252 Atomic orbital electron populations 1.21587 0.96181 1.00037 1.00664 1.21459 0.94591 0.98181 1.00362 1.19126 0.91503 0.91617 0.86972 0.96906 1.21951 0.94297 1.37154 1.05397 0.93655 1.25555 1.01523 0.95093 0.95594 1.69989 1.36114 1.38810 1.09892 0.85821 0.81963 0.77481 0.77961 1.20714 1.20636 1.19828 1.62468 1.57101 1.01321 1.04124 1.22233 0.96112 0.99527 0.93303 1.22007 0.96916 0.89422 0.96605 0.96572 1.21705 1.02459 0.95190 0.95496 1.22185 1.00863 0.95362 1.00208 1.22842 0.98388 0.97457 0.83804 1.87905 1.86117 1.20195 1.38399 1.22384 0.98579 0.80084 0.98510 0.93543 0.94893 0.92127 0.94903 0.92081 0.92971 0.97393 0.92293 0.90521 0.90386 0.91254 0.87853 0.92487 0.87206 0.91937 0.91608 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 9.85 71.98 0.71 -4.30 16 2 C -0.11 -5.08 5.12 30.59 0.16 -4.92 16 3 C 0.22 10.59 1.56 44.17 0.07 10.66 16 4 H 0.01 0.72 6.04 -2.39 -0.01 0.71 16 5 C -0.55 -29.90 7.08 25.60 0.18 -29.72 16 6 H 0.05 2.52 5.84 -2.91 -0.02 2.50 16 7 C 0.02 1.23 5.29 84.65 0.45 1.68 16 8 N -0.91 -52.12 11.30 21.45 0.24 -51.88 16 9 Si 0.94 44.36 29.54 68.60 2.03 46.38 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 13 N -0.53 -21.58 3.93 -875.67 -3.44 -25.02 16 14 C 0.04 1.38 8.38 127.69 1.07 2.45 16 15 C 0.06 2.30 1.98 45.01 0.09 2.39 16 16 H 0.02 0.74 6.98 -2.39 -0.02 0.73 16 17 C -0.11 -3.18 4.74 30.71 0.15 -3.03 16 18 C -0.15 -3.54 6.14 30.68 0.19 -3.35 16 19 C 0.05 1.28 6.84 72.01 0.49 1.77 16 20 O -0.41 -14.49 10.77 -148.98 -1.60 -16.10 16 21 C 0.08 3.12 5.92 72.01 0.43 3.55 16 22 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 2.24 7.60 -2.39 -0.02 2.22 16 25 H 0.03 1.52 6.25 -2.38 -0.01 1.50 16 26 H 0.06 3.28 5.97 -2.39 -0.01 3.27 16 27 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.01 0.32 6.35 -2.39 -0.02 0.30 16 29 H 0.06 2.24 6.17 -2.39 -0.01 2.23 16 30 H 0.08 2.36 6.29 -2.39 -0.02 2.35 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.07 1.91 6.54 -2.39 -0.02 1.89 16 33 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 2.97 6.42 -2.39 -0.02 2.95 16 38 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -60.24 283.63 2.22 -58.01 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.02 Total: 11.43 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 3.98 Total: -22.82 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -3.20 Total: -76.91 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -1.60 Total: -16.10 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -60.24 2.22 -58.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401478940.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.853 kcal (2) G-P(sol) polarization free energy of solvation -60.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds