Wall clock time and date at job start Sun Mar 29 2020 22:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.53075 * 2 1 4 4 C 1.53115 * 109.50349 * 239.90385 * 2 1 3 5 5 C 1.53123 * 109.15886 * 182.40167 * 4 2 1 6 6 H 1.09002 * 109.50371 * 297.70988 * 5 4 2 7 7 O 1.42896 * 109.50094 * 177.63144 * 5 4 2 8 8 C 1.53039 * 109.31189 * 57.67439 * 5 4 2 9 9 N 1.46933 * 109.47298 * 300.83945 * 8 5 4 10 10 C 1.46903 * 110.98323 * 185.81994 * 9 8 5 11 11 C 1.53005 * 109.47120 * 65.76932 * 10 9 8 12 12 C 1.52998 * 109.47346 * 179.97438 * 11 10 9 13 13 C 1.50689 * 109.47398 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00277 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00549 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99558 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00488 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47171 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47434 * 119.99978 * 17 15 13 20 20 H 1.48494 * 109.47237 * 240.00036 * 17 15 13 21 21 C 1.46847 * 111.22239 * 61.71805 * 9 8 5 22 22 H 1.09007 * 109.46562 * 180.10090 * 1 2 3 23 23 H 1.08999 * 109.47414 * 300.09612 * 1 2 3 24 24 H 1.08998 * 109.47277 * 60.10066 * 1 2 3 25 25 H 1.08994 * 109.52606 * 62.49511 * 4 2 1 26 26 H 1.09000 * 109.57447 * 302.33182 * 4 2 1 27 27 H 0.96703 * 113.99572 * 180.02562 * 7 5 4 28 28 H 1.09000 * 109.46148 * 60.81334 * 8 5 4 29 29 H 1.09002 * 109.46208 * 180.79044 * 8 5 4 30 30 H 1.09002 * 109.47317 * 185.77264 * 10 9 8 31 31 H 1.08997 * 109.47431 * 305.77316 * 10 9 8 32 32 H 1.08993 * 109.47242 * 300.00203 * 11 10 9 33 33 H 1.09008 * 109.46497 * 60.00407 * 11 10 9 34 34 H 1.09002 * 109.47514 * 300.00590 * 12 11 10 35 35 H 1.09006 * 109.46517 * 60.00139 * 12 11 10 36 36 H 0.97002 * 120.00114 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.46124 * 178.23311 * 21 9 8 38 38 H 1.09004 * 109.46016 * 58.26830 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0413 -0.7237 -1.2487 5 6 3.5713 -0.7718 -1.2107 6 1 3.9678 0.2434 -1.2298 7 8 4.0542 -1.4940 -2.3452 8 6 4.0239 -1.4732 0.0720 9 7 3.5093 -0.7419 1.2379 10 6 4.0373 -1.3056 2.4875 11 6 5.5498 -1.0825 2.5486 12 6 6.0997 -1.6690 3.8503 13 6 7.5891 -1.4487 3.9108 14 1 8.0932 -0.9407 3.1020 15 6 8.3086 -1.8956 4.9989 16 7 7.6949 -2.5146 5.9837 17 14 10.1548 -1.6219 5.0742 18 1 10.5995 -0.9063 3.8513 19 1 10.4862 -0.8080 6.2713 20 1 10.8465 -2.9331 5.1601 21 6 2.0410 -0.7233 1.2480 22 1 -0.3633 -1.0278 0.0018 23 1 -0.3634 0.5153 0.8891 24 1 -0.3634 0.5123 -0.8909 25 1 1.7157 -0.1871 -2.1397 26 1 1.6454 -1.7391 -1.2700 27 1 5.0178 -1.5644 -2.3856 28 1 3.6385 -2.4927 0.0838 29 1 5.1131 -1.4963 0.1083 30 1 3.5629 -0.8141 3.3368 31 1 3.8261 -2.3743 2.5217 32 1 6.0242 -1.5740 1.6993 33 1 5.7610 -0.0136 2.5144 34 1 5.6252 -1.1771 4.6995 35 1 5.8883 -2.7378 3.8850 36 1 8.2009 -2.8287 6.7493 37 1 1.6906 -0.2021 2.1390 38 1 1.6649 -1.7464 1.2544 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401664476.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:28 Heat of formation + Delta-G solvation = -76.679108 kcal Electronic energy + Delta-G solvation = -16057.302667 eV Core-core repulsion = 13512.408404 eV Total energy + Delta-G solvation = -2544.894262 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.46209 -36.38537 -35.03572 -33.23031 -31.15560 -30.13868 -26.93376 -26.52608 -24.02351 -22.19420 -21.56565 -19.85164 -19.69526 -17.14297 -16.34284 -15.63689 -15.43319 -14.93662 -14.53721 -14.33432 -13.69428 -13.46437 -13.11262 -12.84347 -12.28772 -12.18153 -12.00306 -11.90605 -11.58406 -11.26941 -10.88000 -10.82065 -10.72365 -10.55730 -10.52641 -10.28851 -9.89879 -9.59903 -9.32075 -9.03228 -8.34134 -8.09983 -5.99280 -4.01321 3.31490 3.38906 3.43206 3.86625 4.26880 4.47640 4.76908 4.79357 4.96118 5.04871 5.23857 5.36640 5.42203 5.46840 5.52924 5.64430 5.65548 5.72437 5.80782 5.91772 5.96119 6.01630 6.04936 6.15738 6.30200 6.32170 6.68829 6.76109 7.10297 7.29768 7.37367 7.62990 7.69046 7.83701 8.01156 8.44471 9.06073 9.62742 11.12251 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041559 B = 0.004962 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.578358 B = 5641.315439 C = 6138.147011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 H 0.080 0.920 4 C -0.107 4.107 5 C 0.106 3.894 6 H 0.063 0.937 7 O -0.571 6.571 8 C 0.022 3.978 9 N -0.536 5.536 10 C 0.057 3.943 11 C -0.105 4.105 12 C 0.021 3.979 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.057 3.943 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.380 0.620 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.016 0.984 35 H 0.013 0.987 36 H 0.259 0.741 37 H 0.076 0.924 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.929 3.814 -12.643 17.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.099 0.901 4 C -0.144 4.144 5 C 0.047 3.953 6 H 0.081 0.919 7 O -0.376 6.376 8 C -0.106 4.106 9 N -0.261 5.261 10 C -0.070 4.070 11 C -0.143 4.143 12 C -0.017 4.017 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.072 4.072 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.227 0.773 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -12.377 4.162 -12.644 18.176 hybrid contribution 1.389 -0.778 0.449 1.654 sum -10.988 3.384 -12.195 16.761 Atomic orbital electron populations 1.21767 0.94663 1.01868 1.01872 1.21114 0.95248 1.00396 0.93850 0.90117 1.21583 0.93546 1.01252 0.98051 1.21800 0.94657 0.94583 0.84242 0.91860 1.86464 1.27004 1.78293 1.45874 1.22844 1.01340 0.95630 0.90793 1.61948 1.06988 1.54356 1.02834 1.22296 0.98060 0.96768 0.89882 1.21663 0.91085 1.01029 1.00484 1.19081 0.95540 0.95866 0.91176 1.21282 0.93041 1.36900 1.04374 0.92651 1.25032 0.98474 0.95271 0.95749 1.69980 1.35651 1.39327 1.08649 0.86542 0.85675 0.77844 0.77986 1.19731 1.21009 1.21053 1.22180 0.88109 0.98748 0.98125 0.92740 0.92305 0.92482 0.91418 0.91655 0.77307 0.94524 0.89763 0.91025 0.95320 0.93571 0.92567 0.96570 0.96838 0.93094 0.90569 0.95104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.20 37.16 0.34 -0.91 16 2 C -0.09 -0.94 2.88 -90.54 -0.26 -1.20 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 4 C -0.11 -1.22 4.94 -26.61 -0.13 -1.35 16 5 C 0.11 1.32 3.63 -26.65 -0.10 1.23 16 6 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 7 O -0.57 -6.96 13.32 -35.23 -0.47 -7.43 16 8 C 0.02 0.32 4.92 -3.79 -0.02 0.30 16 9 N -0.54 -8.15 4.66 -234.59 -1.09 -9.24 16 10 C 0.06 1.00 4.96 -3.82 -0.02 0.99 16 11 C -0.10 -2.19 5.08 -26.73 -0.14 -2.32 16 12 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 13 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 17 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 21 C 0.06 0.72 4.74 -3.84 -0.02 0.70 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.38 3.26 9.08 45.56 0.41 3.68 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.25 6.22 -51.93 -0.32 0.93 16 30 H 0.07 1.25 7.99 -51.93 -0.41 0.84 16 31 H 0.03 0.52 8.12 -51.93 -0.42 0.09 16 32 H 0.05 0.95 6.43 -51.93 -0.33 0.61 16 33 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.08 0.94 8.02 -51.93 -0.42 0.52 16 38 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 301.64 15.07 4.55 4.55 Total: -1.00 -30.99 301.64 -8.30 -39.29 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.11 Total: -1.73 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -0.89 Total: -15.76 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.36 Total: -35.67 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.47 Total: -7.43 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.99 -8.30 -39.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401664476.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.387 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds