Wall clock time and date at job start Sun Mar 29 2020 22:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.53075 * 2 1 4 4 C 1.53115 * 109.50349 * 239.90385 * 2 1 3 5 5 C 1.53123 * 109.15886 * 182.40167 * 4 2 1 6 6 H 1.09002 * 109.50371 * 297.70988 * 5 4 2 7 7 O 1.42896 * 109.50094 * 177.63144 * 5 4 2 8 8 C 1.53039 * 109.31189 * 57.67439 * 5 4 2 9 9 N 1.46933 * 109.47298 * 300.83945 * 8 5 4 10 10 C 1.46903 * 110.98323 * 185.81994 * 9 8 5 11 11 C 1.53005 * 109.47120 * 65.76932 * 10 9 8 12 12 C 1.52998 * 109.47346 * 179.97438 * 11 10 9 13 13 C 1.50689 * 109.47398 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00277 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00549 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99558 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00488 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47171 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47434 * 119.99978 * 17 15 13 20 20 H 1.48494 * 109.47237 * 240.00036 * 17 15 13 21 21 C 1.46847 * 111.22239 * 61.71805 * 9 8 5 22 22 H 1.09007 * 109.46562 * 180.10090 * 1 2 3 23 23 H 1.08999 * 109.47414 * 300.09612 * 1 2 3 24 24 H 1.08998 * 109.47277 * 60.10066 * 1 2 3 25 25 H 1.08994 * 109.52606 * 62.49511 * 4 2 1 26 26 H 1.09000 * 109.57447 * 302.33182 * 4 2 1 27 27 H 0.96703 * 113.99572 * 180.02562 * 7 5 4 28 28 H 1.09000 * 109.46148 * 60.81334 * 8 5 4 29 29 H 1.09002 * 109.46208 * 180.79044 * 8 5 4 30 30 H 1.09002 * 109.47317 * 185.77264 * 10 9 8 31 31 H 1.08997 * 109.47431 * 305.77316 * 10 9 8 32 32 H 1.08993 * 109.47242 * 300.00203 * 11 10 9 33 33 H 1.09008 * 109.46497 * 60.00407 * 11 10 9 34 34 H 1.09002 * 109.47514 * 300.00590 * 12 11 10 35 35 H 1.09006 * 109.46517 * 60.00139 * 12 11 10 36 36 H 0.97002 * 120.00114 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.46124 * 178.23311 * 21 9 8 38 38 H 1.09004 * 109.46016 * 58.26830 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0413 -0.7237 -1.2487 5 6 3.5713 -0.7718 -1.2107 6 1 3.9678 0.2434 -1.2298 7 8 4.0542 -1.4940 -2.3452 8 6 4.0239 -1.4732 0.0720 9 7 3.5093 -0.7419 1.2379 10 6 4.0373 -1.3056 2.4875 11 6 5.5498 -1.0825 2.5486 12 6 6.0997 -1.6690 3.8503 13 6 7.5891 -1.4487 3.9108 14 1 8.0932 -0.9407 3.1020 15 6 8.3086 -1.8956 4.9989 16 7 7.6949 -2.5146 5.9837 17 14 10.1548 -1.6219 5.0742 18 1 10.5995 -0.9063 3.8513 19 1 10.4862 -0.8080 6.2713 20 1 10.8465 -2.9331 5.1601 21 6 2.0410 -0.7233 1.2480 22 1 -0.3633 -1.0278 0.0018 23 1 -0.3634 0.5153 0.8891 24 1 -0.3634 0.5123 -0.8909 25 1 1.7157 -0.1871 -2.1397 26 1 1.6454 -1.7391 -1.2700 27 1 5.0178 -1.5644 -2.3856 28 1 3.6385 -2.4927 0.0838 29 1 5.1131 -1.4963 0.1083 30 1 3.5629 -0.8141 3.3368 31 1 3.8261 -2.3743 2.5217 32 1 6.0242 -1.5740 1.6993 33 1 5.7610 -0.0136 2.5144 34 1 5.6252 -1.1771 4.6995 35 1 5.8883 -2.7378 3.8850 36 1 8.2009 -2.8287 6.7493 37 1 1.6906 -0.2021 2.1390 38 1 1.6649 -1.7464 1.2544 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401664476.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:28 Heat of formation + Delta-G solvation = -98.540836 kcal Electronic energy + Delta-G solvation = -16058.250662 eV Core-core repulsion = 13512.408404 eV Total energy + Delta-G solvation = -2545.842258 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.53421 -37.49998 -36.36295 -35.03730 -32.89753 -31.21161 -28.59770 -27.54079 -25.65126 -23.40526 -22.98115 -21.41060 -20.72340 -18.50625 -18.07936 -16.91214 -16.65085 -16.43650 -15.94740 -15.52375 -15.10930 -14.78399 -14.25572 -14.06839 -13.79001 -13.70421 -13.23434 -12.89113 -12.83812 -12.78046 -12.67883 -12.44684 -12.16281 -11.74639 -11.61047 -11.56130 -11.37412 -11.31458 -11.04801 -10.81555 -10.55899 -9.34631 -8.20868 -6.31930 1.40014 1.40287 1.53847 2.40488 2.76454 3.12496 3.31460 3.77737 3.83148 3.98486 4.08478 4.20452 4.27786 4.34726 4.48631 4.61384 4.65908 4.69540 4.76043 4.78178 4.88187 4.94327 4.98957 5.05570 5.08938 5.18882 5.26487 5.32983 5.46061 5.51423 5.72280 5.84649 6.02386 6.11985 6.26322 6.81410 6.85030 7.37519 8.91384 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041559 B = 0.004962 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.578358 B = 5641.315439 C = 6138.147011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.080 4.080 3 H 0.081 0.919 4 C -0.106 4.106 5 C 0.112 3.888 6 H 0.066 0.934 7 O -0.580 6.580 8 C 0.023 3.977 9 N -0.539 5.539 10 C 0.068 3.932 11 C -0.089 4.089 12 C 0.025 3.975 13 C -0.541 4.541 14 H 0.059 0.941 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.278 1.278 21 C 0.053 3.947 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.394 0.606 28 H 0.027 0.973 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.021 0.979 32 H 0.049 0.951 33 H 0.054 0.946 34 H -0.007 1.007 35 H -0.011 1.011 36 H 0.264 0.736 37 H 0.081 0.919 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.936 4.688 -13.855 18.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 H 0.099 0.901 4 C -0.143 4.143 5 C 0.053 3.947 6 H 0.084 0.916 7 O -0.388 6.388 8 C -0.105 4.105 9 N -0.264 5.264 10 C -0.060 4.060 11 C -0.127 4.127 12 C -0.013 4.013 13 C -0.579 4.579 14 H 0.078 0.922 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.790 3.210 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.204 1.204 21 C -0.074 4.074 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.243 0.757 28 H 0.045 0.955 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.011 0.989 35 H 0.007 0.993 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -12.388 5.040 -13.877 19.273 hybrid contribution 1.373 -1.075 0.823 1.928 sum -11.015 3.965 -13.054 17.534 Atomic orbital electron populations 1.21738 0.92810 1.02265 1.02908 1.21081 0.96681 0.99812 0.92330 0.90086 1.21606 0.92655 1.01205 0.98852 1.21748 0.95475 0.94283 0.83224 0.91600 1.86441 1.28576 1.78254 1.45489 1.22868 1.00752 0.95395 0.91497 1.61913 1.08694 1.53968 1.01829 1.22030 0.95905 0.96520 0.91550 1.21400 0.93312 1.00268 0.97671 1.18981 0.94950 0.94325 0.93033 1.21707 0.94381 1.37105 1.04752 0.92239 1.25993 1.03899 0.94740 0.95226 1.70108 1.37847 1.40168 1.09353 0.85383 0.79086 0.78043 0.78447 1.18549 1.20302 1.20352 1.22307 0.86315 0.99109 0.99691 0.92674 0.91624 0.91140 0.90167 0.92230 0.75654 0.95463 0.90690 0.90934 0.96053 0.93237 0.92750 0.98868 0.99298 0.92764 0.90066 0.95308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.20 71.98 0.66 -1.41 16 2 C -0.08 -1.56 2.88 -10.74 -0.03 -1.59 16 3 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 4 C -0.11 -2.19 4.94 30.67 0.15 -2.04 16 5 C 0.11 2.62 3.63 30.65 0.11 2.73 16 6 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 7 O -0.58 -13.21 13.32 -148.98 -1.98 -15.20 16 8 C 0.02 0.65 4.92 86.31 0.42 1.07 16 9 N -0.54 -15.97 4.66 -896.11 -4.17 -20.14 16 10 C 0.07 2.40 4.96 86.30 0.43 2.83 16 11 C -0.09 -3.74 5.08 30.60 0.16 -3.59 16 12 C 0.02 1.33 4.97 29.84 0.15 1.48 16 13 C -0.54 -31.29 9.11 25.60 0.23 -31.06 16 14 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 15 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 16 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 17 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 18 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 21 C 0.05 1.30 4.74 86.32 0.41 1.71 16 22 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 27 H 0.39 6.20 9.08 -74.06 -0.67 5.52 16 28 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 2.19 6.22 -2.39 -0.01 2.18 16 30 H 0.07 2.54 7.99 -2.39 -0.02 2.52 16 31 H 0.02 0.78 8.12 -2.39 -0.02 0.76 16 32 H 0.05 2.04 6.43 -2.39 -0.02 2.02 16 33 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 34 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 36 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.08 1.89 8.02 -2.39 -0.02 1.87 16 38 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -65.71 301.64 -0.36 -66.07 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.33 Total: 9.30 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 3.16 Total: -29.48 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -3.89 Total: -77.29 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -1.98 Total: -15.20 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -65.71 -0.36 -66.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401664476.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.469 kcal (2) G-P(sol) polarization free energy of solvation -65.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds