Wall clock time and date at job start Sun Mar 29 2020 21:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47229 * 2 1 4 4 H 1.09001 * 109.54188 * 305.10908 * 3 2 1 5 5 C 1.53092 * 109.50918 * 184.99586 * 3 2 1 6 6 N 1.47018 * 109.25997 * 183.21327 * 5 3 2 7 7 C 1.46896 * 111.00001 * 182.39445 * 6 5 3 8 8 C 1.52997 * 109.47114 * 66.04696 * 7 6 5 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00200 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00139 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47145 * 89.99836 * 13 11 9 15 15 H 1.48496 * 109.47547 * 210.00333 * 13 11 9 16 16 H 1.48499 * 109.47030 * 330.00237 * 13 11 9 17 17 C 1.47012 * 110.74978 * 58.61903 * 6 5 3 18 18 H 1.09002 * 109.50719 * 181.45086 * 17 6 5 19 19 C 1.52994 * 109.51046 * 61.31827 * 17 6 5 20 20 C 1.53104 * 109.26042 * 301.38386 * 17 6 5 21 21 O 1.43019 * 109.50481 * 65.21139 * 3 2 1 22 22 H 1.08998 * 109.47105 * 300.00302 * 1 2 3 23 23 H 1.08999 * 109.46931 * 60.00254 * 1 2 3 24 24 H 1.09000 * 109.47317 * 180.02562 * 1 2 3 25 25 H 1.08989 * 109.47296 * 239.99868 * 2 1 3 26 26 H 1.08999 * 109.46931 * 119.99746 * 2 1 3 27 27 H 1.08998 * 109.50329 * 63.28266 * 5 3 2 28 28 H 1.08997 * 109.51177 * 303.15385 * 5 3 2 29 29 H 1.09001 * 109.47271 * 306.04964 * 7 6 5 30 30 H 1.09004 * 109.47041 * 186.04811 * 7 6 5 31 31 H 1.09001 * 109.46832 * 59.99999 * 8 7 6 32 32 H 1.09000 * 109.47611 * 300.00296 * 8 7 6 33 33 H 0.96999 * 120.00061 * 179.97438 * 12 11 9 34 34 H 1.09004 * 109.47299 * 59.99805 * 19 17 6 35 35 H 1.08997 * 109.47556 * 179.97438 * 19 17 6 36 36 H 1.09000 * 109.47265 * 300.00202 * 19 17 6 37 37 H 1.09002 * 109.50312 * 296.91769 * 20 17 6 38 38 H 1.08995 * 109.50615 * 176.78755 * 20 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9832 -0.8403 5 6 3.5658 1.4453 -0.1257 6 7 4.0562 2.8291 -0.0477 7 6 5.5140 2.8815 -0.2212 8 6 5.8742 2.4472 -1.6433 9 6 7.3697 2.5016 -1.8215 10 1 8.0001 2.8142 -1.0022 11 6 7.9331 2.1523 -3.0305 12 7 9.2381 2.1993 -3.1858 13 14 6.8427 1.6110 -4.4474 14 1 6.4536 2.7960 -5.2533 15 1 7.5844 0.6514 -5.3042 16 1 5.6232 0.9552 -3.9109 17 6 3.6539 3.4536 1.2209 18 1 4.0052 4.4851 1.2464 19 6 4.2637 2.6763 2.3891 20 6 2.1271 3.4306 1.3332 21 8 1.6663 2.0811 1.2239 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8528 1.0109 -1.0832 28 1 3.9989 0.8594 0.6850 29 1 5.9895 2.2111 0.4948 30 1 5.8635 3.9001 -0.0527 31 1 5.3988 3.1176 -2.3593 32 1 5.5247 1.4287 -1.8118 33 1 9.6345 1.9532 -4.0363 34 1 5.3505 2.6896 2.3066 35 1 3.9654 3.1400 3.3293 36 1 3.9101 1.6455 2.3637 37 1 1.6942 4.0291 0.5316 38 1 1.8269 3.8409 2.2974 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403905930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:37 Heat of formation + Delta-G solvation = -56.460949 kcal Electronic energy + Delta-G solvation = -16686.641085 eV Core-core repulsion = 14142.623548 eV Total energy + Delta-G solvation = -2544.017537 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.89091 -36.16275 -34.13125 -33.02600 -31.29084 -29.88891 -27.46668 -26.41202 -23.99253 -23.57017 -21.33835 -20.19207 -18.94002 -17.01091 -16.39043 -16.00796 -15.06422 -14.80013 -14.63639 -14.08451 -13.72044 -13.40563 -13.16113 -12.85506 -12.59213 -12.48492 -12.02077 -11.83932 -11.47806 -11.27657 -11.17734 -10.97907 -10.90809 -10.79335 -10.23454 -10.09038 -9.84070 -9.71955 -9.24972 -9.21143 -8.53762 -7.86258 -6.05340 -4.03555 3.31494 3.38430 3.42546 3.85508 4.20940 4.45043 4.86708 4.99378 5.08764 5.18539 5.21715 5.29218 5.36597 5.44357 5.58231 5.62142 5.70669 5.83252 5.85350 5.91077 5.93911 6.01212 6.09129 6.15558 6.25013 6.28037 6.32308 6.47422 6.75351 7.11774 7.26412 7.32038 7.55271 7.58440 7.83008 8.52023 8.98601 9.57123 11.08053 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029484 B = 0.007338 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.437060 B = 3814.826283 C = 4495.242182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.094 3.906 4 H 0.064 0.936 5 C 0.019 3.981 6 N -0.534 5.534 7 C 0.070 3.930 8 C -0.007 4.007 9 C -0.521 4.521 10 H 0.070 0.930 11 C 0.068 3.932 12 N -0.904 5.904 13 Si 0.881 3.119 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.266 1.266 17 C 0.041 3.959 18 H 0.088 0.912 19 C -0.180 4.180 20 C 0.072 3.928 21 O -0.382 6.382 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.043 0.957 29 H 0.030 0.970 30 H 0.067 0.933 31 H 0.020 0.980 32 H 0.015 0.985 33 H 0.263 0.737 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.076 -1.251 8.043 18.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.036 3.964 4 H 0.082 0.918 5 C -0.109 4.109 6 N -0.258 5.258 7 C -0.056 4.056 8 C -0.045 4.045 9 C -0.560 4.560 10 H 0.088 0.912 11 C -0.133 4.133 12 N -0.543 5.543 13 Si 0.709 3.291 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.190 1.190 17 C -0.068 4.068 18 H 0.106 0.894 19 C -0.239 4.239 20 C -0.005 4.005 21 O -0.301 6.301 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.247 -1.104 7.666 17.998 hybrid contribution 0.297 -0.532 -0.355 0.705 sum -15.950 -1.636 7.312 17.622 Atomic orbital electron populations 1.21690 0.95326 1.01220 1.02147 1.21523 0.96537 0.94586 1.02786 1.22220 0.93559 0.93602 0.87053 0.91833 1.22825 0.94794 0.90701 1.02561 1.62539 1.15316 1.16747 1.31234 1.22150 0.83420 1.00638 0.99412 1.19573 0.96977 0.96047 0.91891 1.21074 0.90170 1.45416 0.99302 0.91151 1.24992 0.94844 0.94958 0.98552 1.69914 1.10003 1.49068 1.25288 0.86750 0.81018 0.78920 0.82422 1.20237 1.21470 1.19027 1.22369 0.95916 0.99487 0.89027 0.89388 1.22347 1.01436 1.01593 0.98517 1.22614 0.92617 0.83760 1.01543 1.87907 1.76713 1.26375 1.39071 0.92105 0.92947 0.92983 0.90482 0.91311 0.89278 0.93921 0.95162 0.91462 0.96216 0.96704 0.92721 0.92195 0.92609 0.92005 0.92692 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.81 37.16 0.36 -1.14 16 2 C -0.12 -1.37 5.64 -26.73 -0.15 -1.52 16 3 C 0.09 1.31 2.80 -26.68 -0.07 1.23 16 4 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 5 C 0.02 0.32 4.32 -3.71 -0.02 0.30 16 6 N -0.53 -9.33 4.68 -226.34 -1.06 -10.39 16 7 C 0.07 1.44 4.27 -3.83 -0.02 1.42 16 8 C -0.01 -0.17 3.97 -27.88 -0.11 -0.28 16 9 C -0.52 -14.95 9.66 -34.44 -0.33 -15.29 16 10 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 11 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 12 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 13 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 16 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 17 C 0.04 0.60 2.97 -67.60 -0.20 0.39 16 18 H 0.09 1.22 8.09 -51.93 -0.42 0.80 16 19 C -0.18 -2.50 8.39 37.15 0.31 -2.18 16 20 C 0.07 0.92 6.41 37.21 0.24 1.15 16 21 O -0.38 -5.37 9.47 -35.23 -0.33 -5.71 16 22 H 0.06 0.66 7.83 -51.93 -0.41 0.25 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.86 8.14 -51.94 -0.42 0.43 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.09 1.56 6.37 -51.93 -0.33 1.23 16 28 H 0.04 0.71 6.39 -51.93 -0.33 0.37 16 29 H 0.03 0.63 6.88 -51.93 -0.36 0.27 16 30 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 31 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 32 H 0.01 0.36 5.56 -51.93 -0.29 0.07 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.06 0.89 6.69 -51.93 -0.35 0.55 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.91 6.07 -51.93 -0.31 0.59 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 290.98 15.07 4.38 4.38 Total: -1.00 -30.50 290.98 -7.56 -38.06 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.58 Total: -2.37 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -0.08 Total: -14.03 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: -0.29 Total: -37.63 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.33 Total: -5.71 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.50 -7.56 -38.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403905930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.398 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds