Wall clock time and date at job start Sun Mar 29 2020 21:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47229 * 2 1 4 4 H 1.09001 * 109.54188 * 305.10908 * 3 2 1 5 5 C 1.53092 * 109.50918 * 184.99586 * 3 2 1 6 6 N 1.47018 * 109.25997 * 183.21327 * 5 3 2 7 7 C 1.46896 * 111.00001 * 182.39445 * 6 5 3 8 8 C 1.52997 * 109.47114 * 66.04696 * 7 6 5 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00200 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00139 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47145 * 89.99836 * 13 11 9 15 15 H 1.48496 * 109.47547 * 210.00333 * 13 11 9 16 16 H 1.48499 * 109.47030 * 330.00237 * 13 11 9 17 17 C 1.47012 * 110.74978 * 58.61903 * 6 5 3 18 18 H 1.09002 * 109.50719 * 181.45086 * 17 6 5 19 19 C 1.52994 * 109.51046 * 61.31827 * 17 6 5 20 20 C 1.53104 * 109.26042 * 301.38386 * 17 6 5 21 21 O 1.43019 * 109.50481 * 65.21139 * 3 2 1 22 22 H 1.08998 * 109.47105 * 300.00302 * 1 2 3 23 23 H 1.08999 * 109.46931 * 60.00254 * 1 2 3 24 24 H 1.09000 * 109.47317 * 180.02562 * 1 2 3 25 25 H 1.08989 * 109.47296 * 239.99868 * 2 1 3 26 26 H 1.08999 * 109.46931 * 119.99746 * 2 1 3 27 27 H 1.08998 * 109.50329 * 63.28266 * 5 3 2 28 28 H 1.08997 * 109.51177 * 303.15385 * 5 3 2 29 29 H 1.09001 * 109.47271 * 306.04964 * 7 6 5 30 30 H 1.09004 * 109.47041 * 186.04811 * 7 6 5 31 31 H 1.09001 * 109.46832 * 59.99999 * 8 7 6 32 32 H 1.09000 * 109.47611 * 300.00296 * 8 7 6 33 33 H 0.96999 * 120.00061 * 179.97438 * 12 11 9 34 34 H 1.09004 * 109.47299 * 59.99805 * 19 17 6 35 35 H 1.08997 * 109.47556 * 179.97438 * 19 17 6 36 36 H 1.09000 * 109.47265 * 300.00202 * 19 17 6 37 37 H 1.09002 * 109.50312 * 296.91769 * 20 17 6 38 38 H 1.08995 * 109.50615 * 176.78755 * 20 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9832 -0.8403 5 6 3.5658 1.4453 -0.1257 6 7 4.0562 2.8291 -0.0477 7 6 5.5140 2.8815 -0.2212 8 6 5.8742 2.4472 -1.6433 9 6 7.3697 2.5016 -1.8215 10 1 8.0001 2.8142 -1.0022 11 6 7.9331 2.1523 -3.0305 12 7 9.2381 2.1993 -3.1858 13 14 6.8427 1.6110 -4.4474 14 1 6.4536 2.7960 -5.2533 15 1 7.5844 0.6514 -5.3042 16 1 5.6232 0.9552 -3.9109 17 6 3.6539 3.4536 1.2209 18 1 4.0052 4.4851 1.2464 19 6 4.2637 2.6763 2.3891 20 6 2.1271 3.4306 1.3332 21 8 1.6663 2.0811 1.2239 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8528 1.0109 -1.0832 28 1 3.9989 0.8594 0.6850 29 1 5.9895 2.2111 0.4948 30 1 5.8635 3.9001 -0.0527 31 1 5.3988 3.1176 -2.3593 32 1 5.5247 1.4287 -1.8118 33 1 9.6345 1.9532 -4.0363 34 1 5.3505 2.6896 2.3066 35 1 3.9654 3.1400 3.3293 36 1 3.9101 1.6455 2.3637 37 1 1.6942 4.0291 0.5316 38 1 1.8269 3.8409 2.2974 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403905930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:37 Heat of formation + Delta-G solvation = -77.051024 kcal Electronic energy + Delta-G solvation = -16687.533938 eV Core-core repulsion = 14142.623548 eV Total energy + Delta-G solvation = -2544.910390 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.08384 -37.48859 -35.37186 -34.85689 -32.86909 -31.32593 -28.86741 -27.60935 -25.60928 -24.80865 -22.55408 -21.79848 -20.19485 -19.05365 -17.48393 -17.38291 -16.51751 -16.09934 -16.00614 -15.73187 -14.93825 -14.67128 -14.61968 -14.47594 -14.05880 -13.57155 -13.44477 -13.06421 -12.93718 -12.79471 -12.50457 -12.19694 -12.07167 -11.88138 -11.83806 -11.76813 -11.56084 -11.33916 -11.18325 -10.77781 -10.45370 -9.26141 -8.31956 -6.36454 1.35149 1.36027 1.48604 2.34481 2.78667 2.91982 3.03560 3.78265 3.91116 3.99409 4.10041 4.15911 4.29395 4.35283 4.46078 4.50425 4.59917 4.63735 4.68138 4.71869 4.84234 4.89526 4.92848 4.98670 5.04967 5.12803 5.19437 5.27437 5.31826 5.43669 5.46374 5.59892 6.03733 6.14424 6.25258 6.28626 6.70907 7.28424 8.84772 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029484 B = 0.007338 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.437060 B = 3814.826283 C = 4495.242182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.100 3.900 4 H 0.062 0.938 5 C 0.019 3.981 6 N -0.540 5.540 7 C 0.084 3.916 8 C 0.001 3.999 9 C -0.534 4.534 10 H 0.031 0.969 11 C 0.008 3.992 12 N -0.950 5.950 13 Si 0.951 3.049 14 H -0.267 1.267 15 H -0.282 1.282 16 H -0.248 1.248 17 C 0.037 3.963 18 H 0.095 0.905 19 C -0.173 4.173 20 C 0.073 3.927 21 O -0.386 6.386 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.020 0.980 30 H 0.062 0.938 31 H 0.019 0.981 32 H 0.018 0.982 33 H 0.267 0.733 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.716 -1.525 7.986 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C 0.042 3.958 4 H 0.080 0.920 5 C -0.109 4.109 6 N -0.264 5.264 7 C -0.043 4.043 8 C -0.037 4.037 9 C -0.572 4.572 10 H 0.050 0.950 11 C -0.189 4.189 12 N -0.590 5.590 13 Si 0.775 3.225 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.171 1.171 17 C -0.072 4.072 18 H 0.113 0.887 19 C -0.232 4.232 20 C -0.004 4.004 21 O -0.305 6.305 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.055 0.945 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -18.907 -1.372 7.633 20.436 hybrid contribution 1.184 -0.401 -0.247 1.274 sum -17.723 -1.773 7.386 19.282 Atomic orbital electron populations 1.21647 0.93968 1.02212 1.02037 1.21547 0.97664 0.93082 1.03037 1.22202 0.91522 0.95002 0.87123 0.91974 1.22862 0.96700 0.89852 1.01517 1.62471 1.12767 1.17682 1.33517 1.21812 0.85810 0.99851 0.96866 1.19434 0.93767 0.96244 0.94249 1.21393 0.92367 1.45050 0.98395 0.95024 1.25965 0.96291 0.94956 1.01727 1.70060 1.12158 1.50425 1.26394 0.85640 0.79452 0.78927 0.78520 1.19197 1.20795 1.17128 1.22541 0.97483 0.99541 0.87636 0.88709 1.22274 1.00160 1.01214 0.99560 1.22752 0.90872 0.83369 1.03358 1.87917 1.76555 1.27014 1.38984 0.92630 0.92598 0.91488 0.89889 0.91464 0.90729 0.94463 0.96183 0.91969 0.96225 0.96351 0.92396 0.93969 0.90087 0.92894 0.92300 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.81 71.98 0.71 -1.84 16 2 C -0.12 -2.47 5.64 30.59 0.17 -2.30 16 3 C 0.10 2.58 2.80 30.63 0.09 2.67 16 4 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 5 C 0.02 0.60 4.32 86.31 0.37 0.97 16 6 N -0.54 -18.30 4.68 -870.02 -4.07 -22.38 16 7 C 0.08 3.45 4.27 86.30 0.37 3.82 16 8 C 0.00 0.04 3.97 29.85 0.12 0.16 16 9 C -0.53 -31.38 9.66 25.60 0.25 -31.14 16 10 H 0.03 2.04 7.99 -2.91 -0.02 2.01 16 11 C 0.01 0.45 5.47 84.65 0.46 0.92 16 12 N -0.95 -60.18 13.96 21.44 0.30 -59.88 16 13 Si 0.95 44.96 27.47 68.60 1.88 46.85 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 16 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 17 C 0.04 0.99 2.97 44.93 0.13 1.12 16 18 H 0.09 2.44 8.09 -2.39 -0.02 2.42 16 19 C -0.17 -4.55 8.39 71.98 0.60 -3.94 16 20 C 0.07 1.66 6.41 72.02 0.46 2.12 16 21 O -0.39 -9.86 9.47 -148.98 -1.41 -11.27 16 22 H 0.05 1.06 7.83 -2.39 -0.02 1.04 16 23 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 2.55 6.37 -2.39 -0.02 2.53 16 28 H 0.04 1.21 6.39 -2.39 -0.02 1.19 16 29 H 0.02 0.85 6.88 -2.39 -0.02 0.84 16 30 H 0.06 2.58 8.04 -2.38 -0.02 2.56 16 31 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 32 H 0.02 0.87 5.56 -2.39 -0.01 0.86 16 33 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 34 H 0.04 1.24 6.69 -2.38 -0.02 1.22 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 1.48 6.07 -2.39 -0.01 1.46 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -65.81 290.98 1.39 -64.42 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.95 Total: 9.70 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 3.73 Total: -27.44 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -3.77 Total: -82.25 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -1.41 Total: -11.27 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.85 kcal Total: -65.81 1.39 -64.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403905930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.630 kcal (2) G-P(sol) polarization free energy of solvation -65.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds