Wall clock time and date at job start Sun Mar 29 2020 21:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47201 * 2 1 4 4 H 1.09004 * 109.50554 * 55.08576 * 3 2 1 5 5 C 1.53091 * 109.54279 * 175.19336 * 3 2 1 6 6 N 1.47018 * 109.26046 * 176.80881 * 5 3 2 7 7 C 1.46899 * 110.99949 * 177.61119 * 6 5 3 8 8 C 1.53002 * 109.46980 * 293.62811 * 7 6 5 9 9 C 1.50701 * 109.47312 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99575 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00348 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99799 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00076 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47131 * 90.00140 * 13 11 9 15 15 H 1.48503 * 109.47153 * 210.00397 * 13 11 9 16 16 H 1.48499 * 109.47200 * 330.00147 * 13 11 9 17 17 C 1.47015 * 110.74665 * 301.38310 * 6 5 3 18 18 H 1.09002 * 109.50921 * 298.68147 * 17 6 5 19 19 C 1.53004 * 109.54042 * 178.57168 * 17 6 5 20 20 C 1.53100 * 109.26085 * 58.61747 * 17 6 5 21 21 O 1.43015 * 109.50608 * 295.00143 * 3 2 1 22 22 H 1.08994 * 109.47123 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47287 * 299.99873 * 1 2 3 24 24 H 1.09000 * 109.46984 * 59.99689 * 1 2 3 25 25 H 1.08998 * 109.47287 * 240.00127 * 2 1 3 26 26 H 1.09002 * 109.46709 * 119.99857 * 2 1 3 27 27 H 1.09008 * 109.51079 * 296.74445 * 5 3 2 28 28 H 1.09004 * 109.51002 * 56.82486 * 5 3 2 29 29 H 1.08992 * 109.47426 * 53.62978 * 7 6 5 30 30 H 1.09001 * 109.46855 * 173.63515 * 7 6 5 31 31 H 1.09002 * 109.47258 * 300.00349 * 8 7 6 32 32 H 1.09001 * 109.46752 * 60.00641 * 8 7 6 33 33 H 0.97000 * 120.00250 * 179.97438 * 12 11 9 34 34 H 1.09001 * 109.47189 * 300.11302 * 19 17 6 35 35 H 1.08999 * 109.46601 * 60.10993 * 19 17 6 36 36 H 1.08995 * 109.47112 * 180.10854 * 19 17 6 37 37 H 1.09005 * 109.50462 * 63.08044 * 20 17 6 38 38 H 1.08997 * 109.50755 * 183.16905 * 20 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9817 0.8425 5 6 3.5662 1.4461 0.1209 6 7 4.0555 2.8303 0.0434 7 6 5.5138 2.8833 0.2122 8 6 5.8783 2.4549 1.6351 9 6 7.3743 2.5099 1.8087 10 1 8.0022 2.8198 0.9864 11 6 7.9413 2.1646 3.0170 12 7 7.1767 1.7867 4.0181 13 14 9.7956 2.2334 3.2322 14 1 10.1881 3.5815 3.7158 15 1 10.2173 1.2102 4.2224 16 1 10.4555 1.9633 1.9297 17 6 3.6487 3.4563 -1.2231 18 1 4.0809 2.9039 -2.0575 19 6 4.1410 4.9045 -1.2594 20 6 2.1217 3.4326 -1.3306 21 8 1.6621 2.0827 -1.2218 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8567 1.0104 1.0769 28 1 3.9971 0.8609 -0.6916 29 1 5.9871 2.2100 -0.5024 30 1 5.8629 3.9012 0.0386 31 1 5.4050 3.1283 2.3498 32 1 5.5293 1.4370 1.8087 33 1 7.5756 1.5434 4.8681 34 1 3.7085 5.4563 -0.4248 35 1 5.2281 4.9207 -1.1814 36 1 3.8371 5.3681 -2.1979 37 1 1.6910 4.0296 -0.5267 38 1 1.8181 3.8447 -2.2929 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403905931.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:39 Heat of formation + Delta-G solvation = -60.475376 kcal Electronic energy + Delta-G solvation = -16502.601845 eV Core-core repulsion = 13958.410229 eV Total energy + Delta-G solvation = -2544.191616 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.59439 -36.08387 -34.08780 -33.04011 -31.43471 -29.69474 -27.10856 -26.24953 -23.93301 -22.96295 -21.17219 -20.39075 -19.52696 -16.59554 -16.35679 -15.66277 -15.07498 -14.59898 -14.53279 -14.08518 -13.74210 -13.39070 -13.13941 -12.86193 -12.15321 -12.12157 -12.04257 -11.53036 -11.43363 -11.14716 -10.97989 -10.92384 -10.84468 -10.74013 -10.55472 -10.09837 -9.88657 -9.45086 -9.16843 -9.05938 -8.33859 -7.77031 -6.00560 -4.03030 3.31412 3.37577 3.40681 3.93620 4.25301 4.48893 4.94077 5.06281 5.16714 5.28282 5.31989 5.35483 5.43811 5.52848 5.67679 5.73086 5.81000 5.84158 5.97423 6.02812 6.04625 6.12667 6.23224 6.26962 6.31625 6.41144 6.45174 6.51792 6.97707 7.37191 7.45751 7.54157 7.77330 7.87863 8.06408 8.42412 9.04012 9.60703 11.10837 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031376 B = 0.006413 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.192648 B = 4364.788065 C = 5074.764602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.093 3.907 4 H 0.065 0.935 5 C 0.025 3.975 6 N -0.532 5.532 7 C 0.058 3.942 8 C 0.029 3.971 9 C -0.522 4.522 10 H 0.053 0.947 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.042 3.958 18 H 0.041 0.959 19 C -0.145 4.145 20 C 0.072 3.928 21 O -0.386 6.386 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.034 0.966 29 H 0.019 0.981 30 H 0.068 0.932 31 H 0.024 0.976 32 H 0.016 0.984 33 H 0.260 0.740 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.882 0.644 -9.310 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.036 3.964 4 H 0.083 0.917 5 C -0.103 4.103 6 N -0.258 5.258 7 C -0.068 4.068 8 C -0.008 4.008 9 C -0.561 4.561 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.067 4.067 18 H 0.058 0.942 19 C -0.202 4.202 20 C -0.005 4.005 21 O -0.305 6.305 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.191 0.761 -8.889 14.311 hybrid contribution 1.702 -0.295 -0.245 1.744 sum -9.489 0.466 -9.133 13.179 Atomic orbital electron populations 1.21690 0.95389 1.01174 1.02121 1.21524 0.96471 0.94577 1.02826 1.22244 0.93681 0.93575 0.86949 0.91690 1.22794 0.94557 0.90265 1.02681 1.62369 1.15272 1.16479 1.31652 1.22444 0.83341 1.00338 1.00681 1.19085 0.95662 0.96674 0.89422 1.21184 0.92192 1.45197 0.97504 0.92839 1.24986 0.98007 0.95284 0.95986 1.69970 1.34917 1.45472 1.02881 0.86597 0.85737 0.77782 0.77894 1.20623 1.21211 1.19944 1.22264 0.96058 0.96381 0.92044 0.94150 1.21822 1.02184 0.94778 1.01442 1.22643 0.92650 0.83672 1.01536 1.87900 1.76694 1.26374 1.39551 0.93004 0.92893 0.92198 0.91407 0.90304 0.88674 0.94777 0.96315 0.91336 0.95755 0.96599 0.92992 0.91681 0.91628 0.92670 0.92584 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.81 37.16 0.36 -1.26 16 2 C -0.12 -1.48 5.65 -26.73 -0.15 -1.63 16 3 C 0.09 1.42 2.80 -26.68 -0.07 1.34 16 4 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 5 C 0.03 0.45 4.72 -3.71 -0.02 0.43 16 6 N -0.53 -9.99 4.54 -226.33 -1.03 -11.02 16 7 C 0.06 1.25 4.68 -3.82 -0.02 1.24 16 8 C 0.03 0.76 4.91 -27.88 -0.14 0.62 16 9 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 10 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 13 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 C 0.04 0.65 2.59 -67.60 -0.17 0.48 16 18 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 19 C -0.14 -2.00 8.92 37.16 0.33 -1.67 16 20 C 0.07 1.00 6.29 37.21 0.23 1.24 16 21 O -0.39 -5.93 10.01 -35.23 -0.35 -6.28 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.69 7.82 -51.93 -0.41 0.29 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.10 1.84 6.38 -51.92 -0.33 1.51 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.07 1.44 5.76 -51.93 -0.30 1.14 16 31 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.02 0.43 6.52 -51.93 -0.34 0.10 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.97 6.17 -51.93 -0.32 0.65 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 298.16 15.07 4.49 4.49 Total: -1.00 -30.16 298.16 -7.96 -38.12 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -6.73 Total: -3.04 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -0.05 Total: -12.79 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: -0.29 Total: -37.18 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.35 Total: -6.28 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.16 -7.96 -38.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403905931.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.359 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds